|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08840 |
PRK08840 |
replicative DNA helicase; Provisional |
3-458 |
0e+00 |
|
replicative DNA helicase; Provisional
Pssm-ID: 181562 [Multi-domain] Cd Length: 464 Bit Score: 800.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 3 KPDKQVDTLKVPPHSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNN 82
Cdd:PRK08840 9 IPDAQVDAIKVPPHSLEAEQSVIGGLLLDNERWDTVAEKVVASDFYSRPHRLIFEGVKSILEAGKPLDLITLSEHLERRE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 83 KLAGIGGFAYLAEIAKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFNTEGRTSHDLLDFAESKVFKIAEQRTKS 162
Cdd:PRK08840 89 QLEDVGGFAYLADLAKNTPSAANINAYADIVAERALVRNLIGVANEIADAGYDPQGRTSEDLLDMAESKVFAIAEARTSE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 163 TEGPQSIHNILEKTVDKIEELYQSPQDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQDKP 242
Cdd:PRK08840 169 NEGPQNVDSILEKTLERIELLYKTPQDGVTGVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKP 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 243 VLIYSLEMPSEQIMMRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLLMEKGKMYVDDASGLTPTDVRSRARRIARDHG 322
Cdd:PRK08840 249 VLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHG 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 323 GISMIMVDYLQLMRVPSLADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLI 402
Cdd:PRK08840 329 GLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLI 408
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 489052852 403 MFIYRDEVYNEDSTDKGIAEIIIGKQRNGPIGKVRLTFQGQFSRFDNYAGPAVDDD 458
Cdd:PRK08840 409 MFIYRDEVYNPDSPLKGTAEIIIGKQRNGPIGSVRLTFQGQYSRFDNYAGPAFDDE 464
|
|
| DnaB |
TIGR00665 |
replicative DNA helicase; This model describes the helicase DnaB, a homohexameric protein ... |
14-451 |
0e+00 |
|
replicative DNA helicase; This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273206 [Multi-domain] Cd Length: 432 Bit Score: 748.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 14 PPHSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNKLAGIGGFAYL 93
Cdd:TIGR00665 1 PPHNIEAEQAVLGAILLDNEAIDDVAEILKPEDFYRPAHRLIFQAILDLYEKGEPIDLVTVAEELEKDGELEEVGGLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 94 AEIAKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFNTEGrTSHDLLDFAESKVFKIAEQRTKstEGPQSIHNIL 173
Cdd:TIGR00665 81 AELASNVPSAANIEYYAEIVKEKAILRRLIQAGTEIVELAYDPTG-DVEELLDEAEQKIFEIAESRTS--KGFKSIKEIL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 174 EKTVDKIEELYQSpQDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQDKPVLIYSLEMPSE 253
Cdd:TIGR00665 158 KEAVEEIEELYER-KGGITGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAE 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 254 QIMMRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLLMEKgKMYVDDASGLTPTDVRSRARRIARDHGgISMIMVDYLQ 333
Cdd:TIGR00665 237 QLVMRMLSSESRVDSQKLRTGRLSDEDWEKLTEAAGELSEA-PLYIDDTPGLTITELRAKARRLKREHG-LGLIVIDYLQ 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 334 LMRVPSLADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLIMFIYRDEVYNE 413
Cdd:TIGR00665 315 LMSGSGRSENRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEYYNP 394
|
410 420 430
....*....|....*....|....*....|....*...
gi 489052852 414 DSTDKGIAEIIIGKQRNGPIGKVRLTFQGQFSRFDNYA 451
Cdd:TIGR00665 395 DSEDKGIAEIIIAKQRNGPTGTVKLAFLGEYTRFENLA 432
|
|
| DnaB |
COG0305 |
Replicative DNA helicase [Replication, recombination and repair]; |
17-451 |
0e+00 |
|
Replicative DNA helicase [Replication, recombination and repair];
Pssm-ID: 440074 [Multi-domain] Cd Length: 429 Bit Score: 716.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 17 SIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNKLAGIGGFAYLAEI 96
Cdd:COG0305 1 NIEAEQAVLGALLLDNDALDEVADILKPEDFYRPAHRLIFEAILDLYERGEPIDLVTVAEELEKRGELEEVGGAAYLAEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 97 AKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFNTEgRTSHDLLDFAESKVFKIAEQRTKSteGPQSIHNILEKT 176
Cdd:COG0305 81 AENVPSAANIEYYARIVKEKALLRRLIEAGTEIVELAYDED-EDVDELLDEAEQKIFEIAEKRSSK--GFVSISDILKEA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 177 VDKIEELYQSPqDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQDKPVLIYSLEMPSEQIM 256
Cdd:COG0305 158 LERIEELYKNG-GGITGVPTGFTDLDKLTGGLQPGDLIILAARPSMGKTAFALNIARNAAIKEGKPVAIFSLEMSAEQLV 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 257 MRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLLMEKgKMYVDDASGLTPTDVRSRARRIARDHGgISMIMVDYLQLMR 336
Cdd:COG0305 237 MRLLSSEARIDSSKLRTGKLSDEDWERLSSAAGELSEA-PIYIDDTPGLTIAEIRAKARRLKREHG-LGLIVIDYLQLMS 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 337 VPSLADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLIMFIYRDEVYNEDST 416
Cdd:COG0305 315 GSGRSENRQQEISEISRSLKALAKELNVPVIALSQLSRAVEQRTDKRPQLSDLRESGSIEQDADVVMFLYRDEYYNPDSE 394
|
410 420 430
....*....|....*....|....*....|....*
gi 489052852 417 DKGIAEIIIGKQRNGPIGKVRLTFQGQFSRFDNYA 451
Cdd:COG0305 395 DKGIAEIIIAKQRNGPTGTVKLAFDGEYTRFENLA 429
|
|
| dnaB_SPI-7_type |
NF040583 |
SPI-7-type island replicative DNA helicase; Members of this family are DnaB-PI, a ... |
14-450 |
0e+00 |
|
SPI-7-type island replicative DNA helicase; Members of this family are DnaB-PI, a pathogenicity island (PI) variant of the replicative DNA helicase DnaB. Members are found with other conjugative element replication proteins such as ParA, ParB in genetic islands whose core proteins (but not cargo proteins) are shared with the Salmonella typhi SPI-7 island.
Pssm-ID: 468557 [Multi-domain] Cd Length: 434 Bit Score: 626.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 14 PPHSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNKLAGIGGFAYL 93
Cdd:NF040583 1 GPYSVEAEQSVLGGLMLDNDRWDDVALLLAADDFYSRAHRIIFRAMARLVSAGQPIDLITLSESLEQQGQLEQVGGFAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 94 AEIAKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFntEGRT-SHDLLDFAESKVFKIAEQRtkSTEGPQSIHNI 172
Cdd:NF040583 81 AELSKNTPSAANIVAYAEIVAEYSRARQLLALGHDLSADAS--APRAdIADLLEQAEQRLFDIAEQA--EPQQEVTLIEG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 173 LEKTVDKIEELYQSPqDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQ-DKPVLIYSLEMP 251
Cdd:NF040583 157 LETLVSELELRCQSG-NGITGTPTGFAELDEMTCGLQPGDLILLAARPSMGKTALALAFCLGALRGKpDKVVQIYSLEMP 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 252 SEQIMMRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLLME-KGKMYVDDASGLTPTDVRSRARRIARDHGGISMIMVD 330
Cdd:NF040583 236 TEQLLMRLVSMLGRVPLQRLRSGLLDDEDWARISQAMALLTDwKDRLIIDDTSYLTPALLRARARRNARKYGKPSLIMVD 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 331 YLQLMRVPSlADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLIMFIYRDEV 410
Cdd:NF040583 316 YLQLMRCPG-QENRTQEIAEISRSLKALAKEMGCPVLALSQLNRQLESRADKRPNNGDLRDSGALEQDADLIMFIYRDEV 394
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 489052852 411 YNEDSTDKGIAEIIIGKQRNGPIGKVRLTFQGQFSRFDNY 450
Cdd:NF040583 395 YNPNTPDKGIAEIIIGKQRQGPTGTVKVQFDGRYTRFSDL 434
|
|
| DnaB_C |
pfam03796 |
DnaB-like helicase C terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at ... |
193-449 |
4.11e-164 |
|
DnaB-like helicase C terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Pssm-ID: 427509 [Multi-domain] Cd Length: 254 Bit Score: 462.66 E-value: 4.11e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 193 GVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQDKPVLIYSLEMPSEQIMMRMLASLGRINQTKVR 272
Cdd:pfam03796 1 GLPTGFTDLDRLTGGLQPGDLIIIAARPSMGKTAFALNIARNAAVKHKKPVAIFSLEMSAEQLVMRLLASEAGVDSQKLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 273 TGQLDDDDWARLSSTMGLLMEKgKMYVDDASGLTPTDVRSRARRIARDHGgISMIMVDYLQLMRVPSLADNRTLEIAEIS 352
Cdd:pfam03796 81 TGQLTDEDWEKLAKAAGRLSEA-PLYIDDTPGLSIAEIRAKARRLKREHG-LGLIVIDYLQLMSGGSRGENRQQEISEIS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 353 RSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLIMFIYRDEVYNEDStDKGIAEIIIGKQRNGP 432
Cdd:pfam03796 159 RSLKALAKELNVPVIALSQLSRAVEQRTDKRPQLSDLRESGAIEQDADVVMFLYRDEYYNPKE-PEGKAEIIIAKQRNGP 237
|
250
....*....|....*..
gi 489052852 433 IGKVRLTFQGQFSRFDN 449
Cdd:pfam03796 238 TGTVKLAFLGEYTRFEN 254
|
|
| DnaB_C |
cd00984 |
C-terminal domain of DnaB helicase; DnaB helicase C-terminal domain. The hexameric helicase ... |
193-449 |
1.42e-155 |
|
C-terminal domain of DnaB helicase; DnaB helicase C-terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Pssm-ID: 410864 [Multi-domain] Cd Length: 256 Bit Score: 441.18 E-value: 1.42e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 193 GVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQDKPVLIYSLEMPSEQIMMRMLASLGRINQTKVR 272
Cdd:cd00984 1 GLPTGFTDLDKLTGGLQPGDLIIIAARPSMGKTAFALNIAENIALDEGLPVLFFSLEMSAEQLAERLLSSESGVSLSKLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 273 TGQLDDDDWARLSSTMGLLMEKgKMYVDDASGLTPTDVRSRARRIARDHGGISMIMVDYLQLMRVPSLADNRTLEIAEIS 352
Cdd:cd00984 81 TGRLDDEDWERLTAAMGELSEL-PLYIDDTPGLTVDEIRAKARRLKREHGGLGLIVIDYLQLIRGSKRAENRQQEVAEIS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 353 RSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLIMFIYRDEVYNEDSTDKGIAEIIIGKQRNGP 432
Cdd:cd00984 160 RSLKALAKELNVPVIALSQLNRGVESRTDKRPMLSDLRESGSIEQDADVVIFLYRDEYYDKDSEDKGIAEIIIAKNRNGP 239
|
250
....*....|....*..
gi 489052852 433 IGKVRLTFQGQFSRFDN 449
Cdd:cd00984 240 TGTVYLAFNPEYTRFTD 256
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08840 |
PRK08840 |
replicative DNA helicase; Provisional |
3-458 |
0e+00 |
|
replicative DNA helicase; Provisional
Pssm-ID: 181562 [Multi-domain] Cd Length: 464 Bit Score: 800.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 3 KPDKQVDTLKVPPHSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNN 82
Cdd:PRK08840 9 IPDAQVDAIKVPPHSLEAEQSVIGGLLLDNERWDTVAEKVVASDFYSRPHRLIFEGVKSILEAGKPLDLITLSEHLERRE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 83 KLAGIGGFAYLAEIAKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFNTEGRTSHDLLDFAESKVFKIAEQRTKS 162
Cdd:PRK08840 89 QLEDVGGFAYLADLAKNTPSAANINAYADIVAERALVRNLIGVANEIADAGYDPQGRTSEDLLDMAESKVFAIAEARTSE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 163 TEGPQSIHNILEKTVDKIEELYQSPQDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQDKP 242
Cdd:PRK08840 169 NEGPQNVDSILEKTLERIELLYKTPQDGVTGVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKP 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 243 VLIYSLEMPSEQIMMRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLLMEKGKMYVDDASGLTPTDVRSRARRIARDHG 322
Cdd:PRK08840 249 VLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHG 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 323 GISMIMVDYLQLMRVPSLADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLI 402
Cdd:PRK08840 329 GLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLI 408
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 489052852 403 MFIYRDEVYNEDSTDKGIAEIIIGKQRNGPIGKVRLTFQGQFSRFDNYAGPAVDDD 458
Cdd:PRK08840 409 MFIYRDEVYNPDSPLKGTAEIIIGKQRNGPIGSVRLTFQGQYSRFDNYAGPAFDDE 464
|
|
| PRK08006 |
PRK08006 |
replicative DNA helicase DnaB; |
5-458 |
0e+00 |
|
replicative DNA helicase DnaB;
Pssm-ID: 181193 [Multi-domain] Cd Length: 471 Bit Score: 792.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 5 DKQVDTLKVPPHSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNKL 84
Cdd:PRK08006 18 DPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 85 AGIGGFAYLAEIAKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFNTEGRTSHDLLDFAESKVFKIAEQRTKSTE 164
Cdd:PRK08006 98 DSVGGFAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIADAGYDPQGRTSEDLLDLAESRVFQIAESRANKDE 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 165 GPQSIHNILEKTVDKIEELYQSPQDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQDKPVL 244
Cdd:PRK08006 178 GPKNIADILDATVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVL 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 245 IYSLEMPSEQIMMRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLLMEKGKMYVDDASGLTPTDVRSRARRIARDHGGI 324
Cdd:PRK08006 258 IFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGL 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 325 SMIMVDYLQLMRVPSLADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLIMF 404
Cdd:PRK08006 338 SLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMF 417
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 489052852 405 IYRDEVYNEDSTDKGIAEIIIGKQRNGPIGKVRLTFQGQFSRFDNYAGPAVDDD 458
Cdd:PRK08006 418 IYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE 471
|
|
| DnaB |
TIGR00665 |
replicative DNA helicase; This model describes the helicase DnaB, a homohexameric protein ... |
14-451 |
0e+00 |
|
replicative DNA helicase; This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273206 [Multi-domain] Cd Length: 432 Bit Score: 748.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 14 PPHSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNKLAGIGGFAYL 93
Cdd:TIGR00665 1 PPHNIEAEQAVLGAILLDNEAIDDVAEILKPEDFYRPAHRLIFQAILDLYEKGEPIDLVTVAEELEKDGELEEVGGLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 94 AEIAKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFNTEGrTSHDLLDFAESKVFKIAEQRTKstEGPQSIHNIL 173
Cdd:TIGR00665 81 AELASNVPSAANIEYYAEIVKEKAILRRLIQAGTEIVELAYDPTG-DVEELLDEAEQKIFEIAESRTS--KGFKSIKEIL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 174 EKTVDKIEELYQSpQDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQDKPVLIYSLEMPSE 253
Cdd:TIGR00665 158 KEAVEEIEELYER-KGGITGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAE 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 254 QIMMRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLLMEKgKMYVDDASGLTPTDVRSRARRIARDHGgISMIMVDYLQ 333
Cdd:TIGR00665 237 QLVMRMLSSESRVDSQKLRTGRLSDEDWEKLTEAAGELSEA-PLYIDDTPGLTITELRAKARRLKREHG-LGLIVIDYLQ 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 334 LMRVPSLADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLIMFIYRDEVYNE 413
Cdd:TIGR00665 315 LMSGSGRSENRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEYYNP 394
|
410 420 430
....*....|....*....|....*....|....*...
gi 489052852 414 DSTDKGIAEIIIGKQRNGPIGKVRLTFQGQFSRFDNYA 451
Cdd:TIGR00665 395 DSEDKGIAEIIIAKQRNGPTGTVKLAFLGEYTRFENLA 432
|
|
| DnaB |
COG0305 |
Replicative DNA helicase [Replication, recombination and repair]; |
17-451 |
0e+00 |
|
Replicative DNA helicase [Replication, recombination and repair];
Pssm-ID: 440074 [Multi-domain] Cd Length: 429 Bit Score: 716.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 17 SIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNKLAGIGGFAYLAEI 96
Cdd:COG0305 1 NIEAEQAVLGALLLDNDALDEVADILKPEDFYRPAHRLIFEAILDLYERGEPIDLVTVAEELEKRGELEEVGGAAYLAEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 97 AKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFNTEgRTSHDLLDFAESKVFKIAEQRTKSteGPQSIHNILEKT 176
Cdd:COG0305 81 AENVPSAANIEYYARIVKEKALLRRLIEAGTEIVELAYDED-EDVDELLDEAEQKIFEIAEKRSSK--GFVSISDILKEA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 177 VDKIEELYQSPqDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQDKPVLIYSLEMPSEQIM 256
Cdd:COG0305 158 LERIEELYKNG-GGITGVPTGFTDLDKLTGGLQPGDLIILAARPSMGKTAFALNIARNAAIKEGKPVAIFSLEMSAEQLV 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 257 MRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLLMEKgKMYVDDASGLTPTDVRSRARRIARDHGgISMIMVDYLQLMR 336
Cdd:COG0305 237 MRLLSSEARIDSSKLRTGKLSDEDWERLSSAAGELSEA-PIYIDDTPGLTIAEIRAKARRLKREHG-LGLIVIDYLQLMS 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 337 VPSLADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLIMFIYRDEVYNEDST 416
Cdd:COG0305 315 GSGRSENRQQEISEISRSLKALAKELNVPVIALSQLSRAVEQRTDKRPQLSDLRESGSIEQDADVVMFLYRDEYYNPDSE 394
|
410 420 430
....*....|....*....|....*....|....*
gi 489052852 417 DKGIAEIIIGKQRNGPIGKVRLTFQGQFSRFDNYA 451
Cdd:COG0305 395 DKGIAEIIIAKQRNGPTGTVKLAFDGEYTRFENLA 429
|
|
| PRK06904 |
PRK06904 |
replicative DNA helicase; Validated |
5-459 |
0e+00 |
|
replicative DNA helicase; Validated
Pssm-ID: 136106 [Multi-domain] Cd Length: 472 Bit Score: 697.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 5 DKQVDTLKVPPHSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNKL 84
Cdd:PRK06904 14 DKKTAQVLIPPHSIEAEQAVLGGIMLDNRHWDSVAERVIADDFYTFEHRIIFQEMELLFRQNTPIDLLTLDQALKTKGKS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 85 AGIGGFAYLAEIAKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFNTEGRTSHDLLDFAESKVFKIAEQRTKSTE 164
Cdd:PRK06904 94 DEVGGFAYLAELSNNTPSAANILAYADIVREKAILRELISVGNNIAKNAYSPKGQDIKDILDEAERDVFSIAEKRTTANE 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 165 GPQSIHNILEKTVDKIEELYQSP-QDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQDKPV 243
Cdd:PRK06904 174 GPQNVINLLENTIDKIENLAATPtNNGVTGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPV 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 244 LIYSLEMPSEQIMMRMLASLGRINQTKVRTGQ-LDDDDWARLSSTMGLLMEKGKMYVDDASGLTPTDVRSRARRIARDHG 322
Cdd:PRK06904 254 LVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQnLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENG 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 323 GISMIMVDYLQLMRVPSLADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLI 402
Cdd:PRK06904 334 GLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLI 413
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 489052852 403 MFIYRDEVYNEDSTD-KGIAEIIIGKQRNGPIGKVRLTFQGQFSRFDNYAG-PAVDDDY 459
Cdd:PRK06904 414 MFIYRDEVYNETTEDnKGVAEIIIGKQRNGPIGRVRLAFQGQYSRFDNLANiPQYYDKY 472
|
|
| PRK05748 |
PRK05748 |
replicative DNA helicase; Provisional |
5-451 |
0e+00 |
|
replicative DNA helicase; Provisional
Pssm-ID: 180232 [Multi-domain] Cd Length: 448 Bit Score: 697.09 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 5 DKQVDTLKVPPHSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNKL 84
Cdd:PRK05748 1 MSEVAALRVPPQSIEAEQAVLGAIFLDPDALITVSEYLSPDDFYRHAHRLIFRAMLKLSDRGEPIDVVTVTEILDDQGDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 85 AGIGGFAYLAEIAKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFNTEGrTSHDLLDFAESKVFKIAEQRTKSte 164
Cdd:PRK05748 81 EEVGGLSYLAELANSVPTAANIEYYAKIVAEKAMLRRLIRTATEIANDAYEPED-DADEILDEAEKKIFEVSERRNKS-- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 165 GPQSIHNILEKTVDKIEELYQSpQDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQDKPVL 244
Cdd:PRK05748 158 GFKNIKDVLVKAYDRIEMLHNQ-TGDITGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 245 IYSLEMPSEQIMMRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLLMEKGkMYVDDASGLTPTDVRSRARRIARDHGGI 324
Cdd:PRK05748 237 IFSLEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAP-IYIDDTPGIKVTEIRARCRRLAQEHGGL 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 325 SMIMVDYLQLMRVP-SLADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLIM 403
Cdd:PRK05748 316 GLILIDYLQLIQGSgRSGENRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVA 395
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 489052852 404 FIYRDEVYNEDSTDKGIAEIIIGKQRNGPIGKVRLTFQGQFSRFDNYA 451
Cdd:PRK05748 396 FLYRDDYYDEETENKNTIEIIIAKQRNGPVGTVELAFQKEYNKFVNLA 443
|
|
| dnaB_SPI-7_type |
NF040583 |
SPI-7-type island replicative DNA helicase; Members of this family are DnaB-PI, a ... |
14-450 |
0e+00 |
|
SPI-7-type island replicative DNA helicase; Members of this family are DnaB-PI, a pathogenicity island (PI) variant of the replicative DNA helicase DnaB. Members are found with other conjugative element replication proteins such as ParA, ParB in genetic islands whose core proteins (but not cargo proteins) are shared with the Salmonella typhi SPI-7 island.
Pssm-ID: 468557 [Multi-domain] Cd Length: 434 Bit Score: 626.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 14 PPHSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNKLAGIGGFAYL 93
Cdd:NF040583 1 GPYSVEAEQSVLGGLMLDNDRWDDVALLLAADDFYSRAHRIIFRAMARLVSAGQPIDLITLSESLEQQGQLEQVGGFAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 94 AEIAKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFntEGRT-SHDLLDFAESKVFKIAEQRtkSTEGPQSIHNI 172
Cdd:NF040583 81 AELSKNTPSAANIVAYAEIVAEYSRARQLLALGHDLSADAS--APRAdIADLLEQAEQRLFDIAEQA--EPQQEVTLIEG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 173 LEKTVDKIEELYQSPqDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQ-DKPVLIYSLEMP 251
Cdd:NF040583 157 LETLVSELELRCQSG-NGITGTPTGFAELDEMTCGLQPGDLILLAARPSMGKTALALAFCLGALRGKpDKVVQIYSLEMP 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 252 SEQIMMRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLLME-KGKMYVDDASGLTPTDVRSRARRIARDHGGISMIMVD 330
Cdd:NF040583 236 TEQLLMRLVSMLGRVPLQRLRSGLLDDEDWARISQAMALLTDwKDRLIIDDTSYLTPALLRARARRNARKYGKPSLIMVD 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 331 YLQLMRVPSlADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLIMFIYRDEV 410
Cdd:NF040583 316 YLQLMRCPG-QENRTQEIAEISRSLKALAKEMGCPVLALSQLNRQLESRADKRPNNGDLRDSGALEQDADLIMFIYRDEV 394
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 489052852 411 YNEDSTDKGIAEIIIGKQRNGPIGKVRLTFQGQFSRFDNY 450
Cdd:NF040583 395 YNPNTPDKGIAEIIIGKQRQGPTGTVKVQFDGRYTRFSDL 434
|
|
| PRK07004 |
PRK07004 |
replicative DNA helicase; Provisional |
1-452 |
0e+00 |
|
replicative DNA helicase; Provisional
Pssm-ID: 235907 [Multi-domain] Cd Length: 460 Bit Score: 596.12 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 1 MAKP-DKQVDTLKVPPHSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLE 79
Cdd:PRK07004 1 MNAPaDPQLESLKVPPHSIEAEQSVLGGLLLDNAAWDRIADFLSQSDFYRYDHRIIFEHIGRLIAATRPADVITVYEALT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 80 KNNKLAGIGGFAYLAEIAKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFNTEGRTSHDLLDFAESKVFKIAEQR 159
Cdd:PRK07004 81 TSGKAEEVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSVADEISADAFNPQGKEVRQLLDEAESKVFSIAEEG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 160 TKSTEGPQSIHNILEKTVDKIEELY--QSPQDgVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAM 237
Cdd:PRK07004 161 ARGTQGFLEIGPLLTQVVERIDTLYhtANPSD-VTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAV 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 238 TQDKPVLIYSLEMPSEQIMMRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLlMEKGKMYVDDASGLTPTDVRSRARRI 317
Cdd:PRK07004 240 EYGLPVAVFSMEMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAVQK-MSEAQLFIDETGGLNPMELRSRARRL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 318 ARDHGGISMIMVDYLQLMRVPSLADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQ 397
Cdd:PRK07004 319 ARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQ 398
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 489052852 398 DADLIMFIYRDEVYNEDSTDKGIAEIIIGKQRNGPIGKVRLTFQGQFSRFDNYAG 452
Cdd:PRK07004 399 DADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGPVRLTFLGQYTKFDNFAG 453
|
|
| PRK08760 |
PRK08760 |
replicative DNA helicase; Provisional |
3-456 |
0e+00 |
|
replicative DNA helicase; Provisional
Pssm-ID: 181547 [Multi-domain] Cd Length: 476 Bit Score: 523.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 3 KPDKQVDTLKVPPHSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNN 82
Cdd:PRK08760 22 RPEPRLDQLRVPPHSVEAEQAVLGGLMLAPDALDRVNDQLTENDFYRRDHRLIYRAIRELSEKDRPFDAVTLGEWFESQG 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 83 KLAGIGGFAYLAEIAKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFNTEGRTSHDLLDFAESKVFKIAEQ---- 158
Cdd:PRK08760 102 KLEQVGDGAYLIELASTTPSAANIAAYAEIVRDKAVLRQLIEVGTTIVNDGFQPEGRESIELLASAEKAVFKIAEAgarg 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 159 RTKSTEGPQSIHNILEKTVDKIEElyqspQDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMT 238
Cdd:PRK08760 182 RTDFVAMPGALKDAFEELRNRFEN-----GGNITGLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIK 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 239 QDKPVLIYSLEMPSEQIMMRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLLMEKgKMYVDDASGLTPTDVRSRARRIA 318
Cdd:PRK08760 257 SKKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKMLKET-KIFIDDTPGVSPEVLRSKCRRLK 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 319 RDHgGISMIMVDYLQLMRVPSLADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQD 398
Cdd:PRK08760 336 REH-DLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQD 414
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 489052852 399 ADLIMFIYRDEVYNED-STDKGIAEIIIGKQRNGPIGKVRLTFQGQFSRFDNYAGPAVD 456
Cdd:PRK08760 415 ADMIVFIYRDDYYNKEnSPDKGLAEIIIGKHRGGPTGSCKLKFFGEYTRFDNLAHDSVG 473
|
|
| DnaB_C |
pfam03796 |
DnaB-like helicase C terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at ... |
193-449 |
4.11e-164 |
|
DnaB-like helicase C terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Pssm-ID: 427509 [Multi-domain] Cd Length: 254 Bit Score: 462.66 E-value: 4.11e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 193 GVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQDKPVLIYSLEMPSEQIMMRMLASLGRINQTKVR 272
Cdd:pfam03796 1 GLPTGFTDLDRLTGGLQPGDLIIIAARPSMGKTAFALNIARNAAVKHKKPVAIFSLEMSAEQLVMRLLASEAGVDSQKLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 273 TGQLDDDDWARLSSTMGLLMEKgKMYVDDASGLTPTDVRSRARRIARDHGgISMIMVDYLQLMRVPSLADNRTLEIAEIS 352
Cdd:pfam03796 81 TGQLTDEDWEKLAKAAGRLSEA-PLYIDDTPGLSIAEIRAKARRLKREHG-LGLIVIDYLQLMSGGSRGENRQQEISEIS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 353 RSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLIMFIYRDEVYNEDStDKGIAEIIIGKQRNGP 432
Cdd:pfam03796 159 RSLKALAKELNVPVIALSQLSRAVEQRTDKRPQLSDLRESGAIEQDADVVMFLYRDEYYNPKE-PEGKAEIIIAKQRNGP 237
|
250
....*....|....*..
gi 489052852 433 IGKVRLTFQGQFSRFDN 449
Cdd:pfam03796 238 TGTVKLAFLGEYTRFEN 254
|
|
| phage_DnaB |
TIGR03600 |
phage replicative helicase, DnaB family, HK022 subfamily; Members of this family are phage (or ... |
17-440 |
1.76e-162 |
|
phage replicative helicase, DnaB family, HK022 subfamily; Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 274672 [Multi-domain] Cd Length: 420 Bit Score: 464.95 E-value: 1.76e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 17 SIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNKLAGIGGFAYLAEI 96
Cdd:TIGR03600 1 SIEAEQAVLGGLLLDNDFIERVMAILKPEHFYSQDHRIIFEAMLDMFAENRPVDPLTLADKLEAEGEAEKVGGLAYLAEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 97 AKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFNTEGRTSHDLLDFAESKVFKIAeQRTKSTEGPQSIHNILEKT 176
Cdd:TIGR03600 81 SNNTPSAANISSYARIVREKAKERKLIAACQRIITLACSPDGGTAEQKVEEAQAALLALT-MSDGQEDGFVTFGEVLEDV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 177 VDKIEELYqSPQDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQDKPVLIYSLEMPSEQIM 256
Cdd:TIGR03600 160 VRDLDKRF-NPKGELTGLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 257 MRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLLMEKgKMYVDDASGLTPTDVRSRARRIARDHGGISMIMVDYLQLMR 336
Cdd:TIGR03600 239 ERLLASKSGINTGNIRTGRFNDSEFNRLLNAVDRLSEK-DLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 337 vPSLADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLIMFIYRDEVYNEDST 416
Cdd:TIGR03600 318 -PARGRDRNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGYYDAREP 396
|
410 420
....*....|....*....|....
gi 489052852 417 DKGIAEIIIGKQRNGPIGKVRLTF 440
Cdd:TIGR03600 397 PAGIAELILAKNRHGPTGTVELLF 420
|
|
| PRK05595 |
PRK05595 |
replicative DNA helicase; Provisional |
11-450 |
3.58e-162 |
|
replicative DNA helicase; Provisional
Pssm-ID: 235525 [Multi-domain] Cd Length: 444 Bit Score: 465.07 E-value: 3.58e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 11 LKVPPHSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNKLAGIGGF 90
Cdd:PRK05595 5 IRSLPQSIEAEQSVLGAMIIDKTSIAEAAEVLKSEDFYRDSHKVIFSAIIELYQKDIAVDMLTLTENLKSTDKLEAAGGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 91 AYLAEIAKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFNTEGRTShDLLDFAESKVFKIAEQRTKSTEGPqsIH 170
Cdd:PRK05595 85 TYITELSNSIVSTANIQSYIKIVKDKSTLRRLIKSSTEIIENSYNNQDDVE-KVIDSAEKKIFDISEKRTTSDFEP--LS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 171 NILEKTVDKIEELYQSpQDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQDKPVLIYSLEM 250
Cdd:PRK05595 162 NVLERGFEQIENLFNN-KGETTGVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 251 PSEQIMMRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLLmEKGKMYVDDASGLTPTDVRSRARRIARDHGgISMIMVD 330
Cdd:PRK05595 241 SKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARASGPL-AAAKIFIDDTAGVSVMEMRSKCRRLKIEHG-IDMILID 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 331 YLQLMRVPSLADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLIMFIYRDEV 410
Cdd:PRK05595 319 YLQLMSGGKGSESRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFLYRDEY 398
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 489052852 411 YNEDSTDKGIAEIIIGKQRNGPIGKVRLTFQGQFSRFDNY 450
Cdd:PRK05595 399 YNKETEDKNVAECIIAKQRNGPTGTVKLAWLGQYSKFGNL 438
|
|
| DnaB_C |
cd00984 |
C-terminal domain of DnaB helicase; DnaB helicase C-terminal domain. The hexameric helicase ... |
193-449 |
1.42e-155 |
|
C-terminal domain of DnaB helicase; DnaB helicase C-terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Pssm-ID: 410864 [Multi-domain] Cd Length: 256 Bit Score: 441.18 E-value: 1.42e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 193 GVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQDKPVLIYSLEMPSEQIMMRMLASLGRINQTKVR 272
Cdd:cd00984 1 GLPTGFTDLDKLTGGLQPGDLIIIAARPSMGKTAFALNIAENIALDEGLPVLFFSLEMSAEQLAERLLSSESGVSLSKLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 273 TGQLDDDDWARLSSTMGLLMEKgKMYVDDASGLTPTDVRSRARRIARDHGGISMIMVDYLQLMRVPSLADNRTLEIAEIS 352
Cdd:cd00984 81 TGRLDDEDWERLTAAMGELSEL-PLYIDDTPGLTVDEIRAKARRLKREHGGLGLIVIDYLQLIRGSKRAENRQQEVAEIS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 353 RSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLIMFIYRDEVYNEDSTDKGIAEIIIGKQRNGP 432
Cdd:cd00984 160 RSLKALAKELNVPVIALSQLNRGVESRTDKRPMLSDLRESGSIEQDADVVIFLYRDEYYDKDSEDKGIAEIIIAKNRNGP 239
|
250
....*....|....*..
gi 489052852 433 IGKVRLTFQGQFSRFDN 449
Cdd:cd00984 240 TGTVYLAFNPEYTRFTD 256
|
|
| PRK09165 |
PRK09165 |
replicative DNA helicase; Provisional |
4-451 |
1.86e-152 |
|
replicative DNA helicase; Provisional
Pssm-ID: 181676 [Multi-domain] Cd Length: 497 Bit Score: 442.40 E-value: 1.86e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 4 PDKQVDTLKVPPHSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNK 83
Cdd:PRK09165 11 PDAAEPEIRELPHNIEAEQALLGAILINNRALDRVSDFLKPEHFFEPLHQRIYEAIAKIIRKGKLATPVTLKTFLENDEA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 84 LAGIGGFAYLAEIAKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFNT-EGRTSHDLLDFAESKVFKIAEQRtKS 162
Cdd:PRK09165 91 LGELGGVQYLAKLATEAVTIINARDYGRIIYDLALRRELINIGEDVVNNAYDApVDVAPQEQIEDAEQKLYELAETG-RY 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 163 TEGPQSIHNILEKTVDKIEELYQSPqDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAA------ 236
Cdd:PRK09165 170 EGGFQSFGTAITEAVDMANAAFKRD-GHLSGISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAkayrre 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 237 MTQD--------KPVLIYSLEMPSEQIMMRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLLmEKGKMYVDDASGLTPT 308
Cdd:PRK09165 249 AQPDgskkavngGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQEL-QKLPLYIDDTPALSIS 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 309 DVRSRARRIARDHGgISMIMVDYLQLMRVPSL--ADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPIN 386
Cdd:PRK09165 328 QLRARARRLKRQHG-LDLLVVDYLQLIRGSSKrsSDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQL 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 387 SDLRESGSIEQDADLIMFIYRDEVYNE-----DSTDK------------GIAEIIIGKQRNGPIGKVRLTFQGQFSRFDN 449
Cdd:PRK09165 407 SDLRESGSIEQDADVVMFVYREEYYLKrkeprEGTPKheewqekmekvhNKAEVIIAKQRHGPTGTVKLAFESEFTRFGD 486
|
..
gi 489052852 450 YA 451
Cdd:PRK09165 487 LA 488
|
|
| PRK08506 |
PRK08506 |
replicative DNA helicase; Provisional |
16-447 |
7.21e-144 |
|
replicative DNA helicase; Provisional
Pssm-ID: 236278 [Multi-domain] Cd Length: 472 Bit Score: 419.80 E-value: 7.21e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 16 HSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNKLAGiggfAYLAE 95
Cdd:PRK08506 5 YDLDIERAVLSSILFSPDKFEEIASVLEPKDFYLPAHQDIFEAMLKLHNEDEPIDEEFIRKKLPKDKKIDE----EILLE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 96 IAkNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFNtEGRTSHDLLDFAESKVFKIAEQrtKSTEGPQSIHNILEK 175
Cdd:PRK08506 81 IL-ATNPIDNIEAYVEEIKEKSIKRELLSLANTIPEQAVE-EDQKSSDILDEVERELYSITNG--SNSEDFKDSKEVIES 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 176 TVDKIEELYQSPQDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMtQDKPVLIYSLEMPSEQI 255
Cdd:PRK08506 157 TMEHIKKQKRLGNKDIIGLDTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALN-QDKGVAFFSLEMPAEQL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 256 MMRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLLMEKgKMYVDDASGLTPTDVRSRARRIARDHGGISMIMVDYLQLM 335
Cdd:PRK08506 236 MLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACDELSKK-KLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLM 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 336 RVPSLADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLIMFIYRDEVYNEDS 415
Cdd:PRK08506 315 SGSGNFKDRHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDVYKERE 394
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 489052852 416 TDKGI----------------------AEIIIGKQRNGPIGKVRLTFQGQFSRF 447
Cdd:PRK08506 395 EKEKEkkakkegkeerrihfqnksieeAEIIIGKNRNGPTGTVKLRFQKEFTRF 448
|
|
| PRK07773 |
PRK07773 |
replicative DNA helicase; Validated |
12-398 |
4.44e-142 |
|
replicative DNA helicase; Validated
Pssm-ID: 236093 [Multi-domain] Cd Length: 886 Bit Score: 428.40 E-value: 4.44e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 12 KVPPHSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNKLAGIGGFA 91
Cdd:PRK07773 22 RQPPQDLAAEQSVLGGMLLSKEAIARVLERLRPGAFYRPAHQNIYDAILDLYGRGEPADLVTVAAELDRRGLLERIGGAP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 92 YLAEIAKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFNTEGRTShDLLDFAESKVFKIAEQRTKstEGPQSIHN 171
Cdd:PRK07773 102 YLHTLISTVPTAANADYYARIVAEKALLRRLIEAGTRIVQYGYAEGADVA-EVVDRAQAEIYDVTDRRLS--EDFVALED 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 172 ILEKTVDKIEELYQSPqDGVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQDKPVLIYSLEMP 251
Cdd:PRK07773 179 LLQPTFDEIDAIASSG-GLARGVPTGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMS 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 252 SEQIMMRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLLMEkGKMYVDDASGLTPTDVRSRARRIARDHgGISMIMVDY 331
Cdd:PRK07773 258 KEQLVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARAMGEISE-APIFIDDTPNLTVMEIRAKARRLRQEA-NLGLIVVDY 335
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489052852 332 LQLMRVPSLADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQD 398
Cdd:PRK07773 336 LQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQRTDKRPMLSDLRESGCLTGD 402
|
|
| PRK05636 |
PRK05636 |
replicative DNA helicase; Provisional |
14-451 |
1.87e-128 |
|
replicative DNA helicase; Provisional
Pssm-ID: 180177 [Multi-domain] Cd Length: 505 Bit Score: 381.49 E-value: 1.87e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 14 PPHSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNKLAGIGGFAYL 93
Cdd:PRK05636 70 PPYDNEAEQGVLGAMLLSPDTVIDIVEVLTPEDFYRPAHQLIFQAIIDLFSDNKEIDPVIVAGRLDRTNDLERVGGAPYL 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 94 AEIAKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFN-TEGRTSHDLLDFAESKVFKIAEQrtKSTEGPQSIHNI 172
Cdd:PRK05636 150 HTLIQSVPTAANARYYAEIVSEKAVLRRLVDAGTRVVQLGYEgDEGAEIDSVIDRAQQEVFAVSQK--NQSEDYAVLADI 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 173 LEKTVDKIEELyqSPQDGV-TGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQDKPVLIYSLEMP 251
Cdd:PRK05636 228 LDPTMDELEML--SSQGGIaTGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMS 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 252 SEQIMMRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLLmEKGKMYVDDASGLTPTDVRSRARRIARDHGgISMIMVDY 331
Cdd:PRK05636 306 KSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRLGKI-AQAPIFIDDSANLTMMEIRSKARRLKQKHD-LKLIVVDY 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 332 LQLMRVPSLADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLIMFIYRDEVY 411
Cdd:PRK05636 384 LQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLYRPDSQ 463
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 489052852 412 NEDSTDKGIAEIIIGKQRNGPIGKVRLTFQGQFSRFDNYA 451
Cdd:PRK05636 464 DKDDERAGEADIILAKHRGGPIDTVQVAHQLHYSRFVDMA 503
|
|
| PRK06321 |
PRK06321 |
replicative DNA helicase; Provisional |
10-452 |
8.96e-119 |
|
replicative DNA helicase; Provisional
Pssm-ID: 180528 [Multi-domain] Cd Length: 472 Bit Score: 355.69 E-value: 8.96e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 10 TLKVPPHSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNKLAGIGG 89
Cdd:PRK06321 12 QLLSPPNSKESEMIVLGCMLTSVNYLNLAANQLQEDDFYFLEHKIIFRVLQDAFKSDKPIDVHLAGEELKRRNQLNVIGG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 90 FAYLAEIAKNTPSAANIDAYANIVRERAVVREMIGVANEIAEAGFNtEGRTSHDLLDFAESKVFKIAE------------ 157
Cdd:PRK06321 92 PSYLITLAEFAGTSAYIEEYAEIIRSKSILRKMIQTAKEIEKKALE-EPKDVATALDEAQNLLFKISQttnlaqyvlvad 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 158 --QRTKSTEGPQSIHNILEKTvDKIEELYQSPQD-GVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEH 234
Cdd:PRK06321 171 klKGLTSSKDKPFLLQLQERQ-EAFQQSAQGDSSpMISGIPTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAEN 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 235 AAMTQDKPVLIYSLEMPSEQIMMRMLASLGRINQTKVRTGQLDDDDWARLSSTMGLlMEKGKMYVDDASGLTPTDVRSRA 314
Cdd:PRK06321 250 FCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVSVVNE-MQEHTLLIDDQPGLKITDLRARA 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 315 RRIARDHGgISMIMVDYLQLMRVPSL---ADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRE 391
Cdd:PRK06321 329 RRMKESYD-IQFLIIDYLQLLSGSGNlrnSESRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRE 407
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489052852 392 SGSIEQDADLIMFIYRDEVYneDSTDK-GIAEIIIGKQRNGPIGKVRLTFQGQFSRFDNYAG 452
Cdd:PRK06321 408 SGSIEQDSDLVMFLLRREYY--DPNDKpGTAELIVAKNRHGSIGSVPLVFEKEFARFRNYAA 467
|
|
| PRK06749 |
PRK06749 |
replicative DNA helicase; Provisional |
17-449 |
1.86e-100 |
|
replicative DNA helicase; Provisional
Pssm-ID: 168658 [Multi-domain] Cd Length: 428 Bit Score: 307.26 E-value: 1.86e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 17 SIEAEQSVLGGLMLDNQAFdRVAELVVSQdFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNkLAGIGGFAYLAEI 96
Cdd:PRK06749 5 NVEAEKTVLGSLLLDGELI-KECRLTEQY-FSMPVHKSIFQLMRKMEDEGQPIDLVTFTSRVDPNF-LKGIGGMEYFIGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 97 AKNTPSAANIDAYANIVRERAVVREMIGVANE-----IAEAGFNTEGRTSHDLLDFaeskvfkiaEQRTKSTEgpqsiHN 171
Cdd:PRK06749 82 MDGVPTTSNFSYYEGLVRGAWKMYQAGVLGHKmgerlIAEKSEKIIGETITALCEL---------EEKDCVCE-----FD 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 172 ILEKTVDKIEELYQSPQDgVTGVSTGYADLDKMTTGLQPSDLIIVAARPSMGKTTFAMNLAEHAAMTQdKPVLIYSLEMP 251
Cdd:PRK06749 148 LKDALVDLYEELHQDAKE-ITGIETGYTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAAKSG-AAVGLFSLEMS 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 252 SEQIMMRMLASLGRINQTKVRTGQ--LDDDDWARLSSTMGLLMEKgKMYVDDASGLTPTDVRSRARRIARDHGGIS-MIM 328
Cdd:PRK06749 226 SKQLLKRMASCVGEVSGGRLKNPKhrFAMEDWEKVSKAFAEIGEL-PLEIYDNAGVTVQDIWMQTRKLKRKHGDKKiLII 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 329 VDYLQLMRV-PSLADNRTLEIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADKRPINSDLRESGSIEQDADLIMFIYR 407
Cdd:PRK06749 305 VDYLQLITGdPKHKGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYR 384
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 489052852 408 DEVYNEDSTDKGIAEIIIGKQRNGPIGKVRLTFQGQFSRFDN 449
Cdd:PRK06749 385 EDYYDKETMQKEMTEIHVAKHRNGPVGSFKLRFLKEFGRFVE 426
|
|
| DnaB |
pfam00772 |
DnaB-like helicase N terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at ... |
13-115 |
1.37e-43 |
|
DnaB-like helicase N terminal domain; The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity.
Pssm-ID: 395624 [Multi-domain] Cd Length: 103 Bit Score: 148.54 E-value: 1.37e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 13 VPPHSIEAEQSVLGGLMLDNQAFDRVAELVVSQDFYTRTHKLIFEAMTALAEIGDPIDLITISESLEKNNKLAGIGGFAY 92
Cdd:pfam00772 1 VPPHNIEAEQAVLGALLLDPEAIDEVADILKPEDFYDPAHRLIFEAILDLYDKGEPIDPVTVAEELEKKGKLEDVGGIAY 80
|
90 100
....*....|....*....|...
gi 489052852 93 LAEIAKNTPSAANIDAYANIVRE 115
Cdd:pfam00772 81 LAELAANVPSAANIEYYARIVKE 103
|
|
| PRK07773 |
PRK07773 |
replicative DNA helicase; Validated |
394-451 |
4.85e-22 |
|
replicative DNA helicase; Validated
Pssm-ID: 236093 [Multi-domain] Cd Length: 886 Bit Score: 99.44 E-value: 4.85e-22
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 489052852 394 SIEQDADLIMFIYRDEVYNEDSTDKGIAEIIIGKQRNGPIGKVRLTFQGQFSRFDNYA 451
Cdd:PRK07773 827 SIEQDADVVILLYRPDYYDRDDPRGGEAEFIVAKHRNGPTGTVTLAFQLHLSRFANLA 884
|
|
| RecA-like_Gp4D_helicase |
cd19483 |
RecA-like domain of Escherichia coli bacteriophage T7 Gp4D helicase; This family includes the ... |
214-431 |
1.88e-17 |
|
RecA-like domain of Escherichia coli bacteriophage T7 Gp4D helicase; This family includes the RecA-like domain of the Gp4D fragment of the Gene4 helicase-primase (Gp4) from bacteriophage T7. Gp4D (residues 241-566) is the minimal fragment of the Gp4 that forms hexameric rings, it contains the helicase domain and the linker connecting the helicase and primase domains. Helicases are ring-shaped oligomeric enzymes that unwind DNA at the replication fork; they couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. This family belongs to the RecA-like NTPase superfamily which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410891 [Multi-domain] Cd Length: 231 Bit Score: 81.08 E-value: 1.88e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 214 IIVAARPSMGKTTFAMNLAEHAAMTQDKPVLIYSLEMPSEQIMMRMLASLGRINQTKVRTGqlDDDDWARLSSTMGLLME 293
Cdd:cd19483 1 VTIGAGSGIGKSTIVRELAYHLITEHGEKVGIISLEESVEETAKGLAGKHLGKPEPLELPR--DDITEEEEDDAFDNELG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 294 KGKMYVDDASGLTPTDVRSRARRIARDHGGISMIMVDYLQ-LMRVPSLADNRTlEIAEISRSLKSLAKELKCPVVALSQL 372
Cdd:cd19483 79 SGRFFLYDHFGSLDWDNLKEKIRYMVKVLGCKVIVLDHLTiLVSGLDSSDERK-ELDEIMTELAALVKELGVTIILVSHL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489052852 373 NRTLEQRAD---KRPINSDLRESGSIEQDADLIMFIYRDEvYNEDSTDKGIAEIIIGKQRNG 431
Cdd:cd19483 158 RRPGGGKGHeegGEVSESDLRGSSAIAQLSDYVIGLERNK-QADDPVERNTTRVRVLKNRFT 218
|
|
| 41 |
PHA02542 |
41 helicase; Provisional |
201-409 |
1.77e-10 |
|
41 helicase; Provisional
Pssm-ID: 222864 [Multi-domain] Cd Length: 473 Bit Score: 62.77 E-value: 1.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 201 LDKMTTG-LQPSDLIIVAARPSMGKTTFAMNLAEhAAMTQDKPVLIYSLEMPSEQIMMRMLASLGRINQTKvrtgqLDDD 279
Cdd:PHA02542 179 LNKITKGgAERKTLNVLLAGVNVGKSLGLCSLAA-DYLQQGYNVLYISMEMAEEVIAKRIDANLLDVSLDD-----IDDL 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 280 DWARLSSTMGLLMEK--GKMYVDD--ASGLTPTDVRS------RARRIARDhggisMIMVDYLQLM---RVPSLADNRTL 346
Cdd:PHA02542 253 SKAEYKAKMEKLRSKtqGKLIIKQypTGGAHAGHFRAllnelkLKKNFKPD-----VIIVDYLGICassRLRVSSENSYT 327
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489052852 347 EIAEISRSLKSLAKELKCPVVALSQLNRTLEQRADkrPINSDLRESGSIEQDADLIMFIYRDE 409
Cdd:PHA02542 328 YVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDSSD--VDMSDTAESAGLPATADFMLAVIETE 388
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
194-413 |
4.41e-10 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 59.54 E-value: 4.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 194 VSTGYADLDKMTT-GLQPSDLIIVAARPSMGKTTFAMNLAEHAAMtQDKPVLIYSLEMPSEQIMMRMlASLGrinqtkvr 272
Cdd:COG0467 2 VPTGIPGLDELLGgGLPRGSSTLLSGPPGTGKTTLALQFLAEGLR-RGEKGLYVSFEESPEQLLRRA-ESLG-------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 273 tgqLDDDDwarlsstmglLMEKGKMYVDDAS----GLTPTDVRSRARRIARDHgGISMIMVD----YLQLMRVPSladnr 344
Cdd:COG0467 72 ---LDLEE----------YIESGLLRIIDLSpeelGLDLEELLARLREAVEEF-GAKRVVIDslsgLLLALPDPE----- 132
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489052852 345 tlEIAEISRSLKSLAKELKCPVVALSQLnrtleqradkrPINSDLRESGSIEQDADLIMFIYRDEVYNE 413
Cdd:COG0467 133 --RLREFLHRLLRYLKKRGVTTLLTSET-----------GGLEDEATEGGLSYLADGVILLRYVELGGE 188
|
|
| AAA_25 |
pfam13481 |
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
213-375 |
6.72e-10 |
|
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins.
Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 58.55 E-value: 6.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 213 LIIVAARPSMGKTTFAMNLAehAAMTQDKP------------VLIYSLEMPSEQIMMRMLASLgrinqtkvrtGQLDDDD 280
Cdd:pfam13481 35 LGLLAGAPGTGKTTLALDLA--AAVATGKPwlggprvpeqgkVLYVSAEGPADELRRRLRAAG----------ADLDLPA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 281 WARLSSTMGLLMekgkMYVDDASGLTPTDVRSRARRIARDHGGISMIMVDYLQLMRVPSLADNRtlEIAEISRSLKSLAK 360
Cdd:pfam13481 103 RLLFLSLVESLP----LFFLDRGGPLLDADVDALEAALEEVEDPDLVVIDPLARALGGDENSNS--DVGRLVKALDRLAR 176
|
170
....*....|....*
gi 489052852 361 ELKCPVVALSQLNRT 375
Cdd:pfam13481 177 RTGATVLLVHHVGKD 191
|
|
| PRK05973 |
PRK05973 |
replicative DNA helicase; Provisional |
208-390 |
1.15e-08 |
|
replicative DNA helicase; Provisional
Pssm-ID: 168322 [Multi-domain] Cd Length: 237 Bit Score: 55.43 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 208 LQPSDLIIVAARPSMGKTTFAMNLAEhAAMTQDKPVLIYSLEMPSEQIMMRmLASLGRINQTKVRTGQLDDDDwaRLSST 287
Cdd:PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAV-EAMKSGRTGVFFTLEYTEQDVRDR-LRALGADRAQFADLFEFDTSD--AICAD 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 288 mgllmekgkmYVddasgltptdvrsrARRIARDHGGiSMIMVDYLQLmrvpsLADNR-TLEIAEISRSLKSLAKELKCPV 366
Cdd:PRK05973 137 ----------YI--------------IARLASAPRG-TLVVIDYLQL-----LDQRReKPDLSVQVRALKSFARERGLII 186
|
170 180
....*....|....*....|....
gi 489052852 367 VALSQLNRTLEQRADKRPINSDLR 390
Cdd:PRK05973 187 VFISQIDRSFDPSAKPLPDIRDVR 210
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
194-380 |
4.34e-05 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 44.56 E-value: 4.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 194 VSTGYADLDKMTTGLQPSD-LIIVAARPSMGKTTFAMNLAEhAAMTQDKPVLIYSLEMPSEQIMMRMlASLGrinqtkvr 272
Cdd:cd01124 1 VKTGIPGLDELLGGGIPKGsVTLLTGGPGTGKTLFGLQFLY-AGAKNGEPGLFFTFEESPERLLRNA-KSFG-------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 273 tgqlddDDWARLSstmgllmEKGKMYVDDAS-----GLTPTDVRSRARRIARDHgGISMIMVDYLQLMRVPSLADNRtle 347
Cdd:cd01124 71 ------WDFDEME-------DEGKLIIVDAPpteagRFSLDELLSRILSIIKSF-KAKRVVIDSLSGLRRAKEDQMR--- 133
|
170 180 190
....*....|....*....|....*....|...
gi 489052852 348 IAEISRSLKSLAKELKCPVVALSQLNRTLEQRA 380
Cdd:cd01124 134 ARRIVIALLNELRAAGVTTIFTSEMRSFLSSES 166
|
|
| AAA_33 |
pfam13671 |
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ... |
213-322 |
1.22e-04 |
|
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.
Pssm-ID: 463952 [Multi-domain] Cd Length: 143 Bit Score: 41.91 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 213 LIIVAARPSMGKTTFAMNLAEHAAMtqdkpVLIyslempSEQIMMRMLASLGRinQTKVRTGQLDDDDWARLSSTMGLLM 292
Cdd:pfam13671 1 LILLVGLPGSGKSTLARRLLEELGA-----VRL------SSDDERKRLFGEGR--PSISYYTDATDRTYERLHELARIAL 67
|
90 100 110
....*....|....*....|....*....|
gi 489052852 293 EKGKMYVDDASGLTPtDVRSRARRIARDHG 322
Cdd:pfam13671 68 RAGRPVILDATNLRR-DERARLLALAREYG 96
|
|
| KaiC_C |
cd19484 |
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most ... |
194-292 |
4.97e-03 |
|
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410892 [Multi-domain] Cd Length: 218 Bit Score: 38.46 E-value: 4.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489052852 194 VSTGYADLDKMTT--GLQPSDLIIVAARPSMGKTTFAMNLAEhAAMTQDKPVLIYSLEMPSEQImMRMLASLGRINQTKV 271
Cdd:cd19484 1 ISTGIPRLDAMLGggGFFRGSSILVSGATGTGKTLLAASFAD-AACRRGERCLYFAFEESPAQL-IRNAKSIGIDLEQME 78
|
90 100
....*....|....*....|.
gi 489052852 272 RTGQLDDDdwARLSSTMGLLM 292
Cdd:cd19484 79 RKGLLKII--CARPELYGLED 97
|
|
| |
