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Conserved domains on  [gi|489053557|ref|WP_002963744|]
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MULTISPECIES: gene transfer agent family protein [Brucella]

Protein Classification

gene transfer agent family protein( domain architecture ID 10570654)

gene transfer agent (GTA) family protein related to bacteriophages may function for mediating gene exchange or as a phage tail tube protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_TAC_11 pfam11836
Phage tail tube protein, GTA-gp10; This is a family of phage tail tube proteins.
 8-103 2.49e-31

Phage tail tube protein, GTA-gp10; This is a family of phage tail tube proteins.


:

Pssm-ID: 432115  Cd Length: 97  Bit Score: 106.12  E-value: 2.49e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053557    8 RGEVAARLDGRDWTLCLTLGALAELESVFETDnLSALVARFSSGRLSARDMQRIICAGLRGDGHTVSEEDVADMRAEGG- 86
Cdd:pfam11836   1 RGEVTLFFGGRERTLRLTLGALAELEEALGAG-LGALVERFAAGRLSARDLLELIRAGLIGGGMTPSEADVLVAAYAGGp 79

                          90
                  ....*....|....*..
gi 489053557   87 VAGFAHIVSSLLTVTFG 103
Cdd:pfam11836  80 LAEVAPIAAALLAAAFG 96
 
Name Accession Description Interval E-value
Phage_TAC_11 pfam11836
Phage tail tube protein, GTA-gp10; This is a family of phage tail tube proteins.
 8-103 2.49e-31

Phage tail tube protein, GTA-gp10; This is a family of phage tail tube proteins.


Pssm-ID: 432115  Cd Length: 97  Bit Score: 106.12  E-value: 2.49e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053557    8 RGEVAARLDGRDWTLCLTLGALAELESVFETDnLSALVARFSSGRLSARDMQRIICAGLRGDGHTVSEEDVADMRAEGG- 86
Cdd:pfam11836   1 RGEVTLFFGGRERTLRLTLGALAELEEALGAG-LGALVERFAAGRLSARDLLELIRAGLIGGGMTPSEADVLVAAYAGGp 79

                          90
                  ....*....|....*..
gi 489053557   87 VAGFAHIVSSLLTVTFG 103
Cdd:pfam11836  80 LAEVAPIAAALLAAAFG 96
 
Name Accession Description Interval E-value
Phage_TAC_11 pfam11836
Phage tail tube protein, GTA-gp10; This is a family of phage tail tube proteins.
 8-103 2.49e-31

Phage tail tube protein, GTA-gp10; This is a family of phage tail tube proteins.


Pssm-ID: 432115  Cd Length: 97  Bit Score: 106.12  E-value: 2.49e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489053557    8 RGEVAARLDGRDWTLCLTLGALAELESVFETDnLSALVARFSSGRLSARDMQRIICAGLRGDGHTVSEEDVADMRAEGG- 86
Cdd:pfam11836   1 RGEVTLFFGGRERTLRLTLGALAELEEALGAG-LGALVERFAAGRLSARDLLELIRAGLIGGGMTPSEADVLVAAYAGGp 79

                          90
                  ....*....|....*..
gi 489053557   87 VAGFAHIVSSLLTVTFG 103
Cdd:pfam11836  80 LAEVAPIAAALLAAAFG 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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