|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10352 |
PRK10352 |
nickel transporter permease NikB; Provisional |
1-314 |
0e+00 |
|
nickel transporter permease NikB; Provisional
Pssm-ID: 182400 [Multi-domain] Cd Length: 314 Bit Score: 554.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 1 MFAFIIRRVILLVPMLFGASLVIFLMLRLGPSDPAMDYLRLSKVPPTPQALESARQMLGLDRAITTQYFDWLGKALHGDF 80
Cdd:PRK10352 1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 81 GISFATQRPVLPDLLYFLPATLQLAGVALVLTLGLSIPLGMWAARHREGWQDQVVRFVAFLGVSMPNFWLGFLLVLVFSI 160
Cdd:PRK10352 81 GISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 161 QLGWLPPMGRGGFAHMIMPAIAISFMSLSINARLLRASMLEVSGQRHVRYARLRGLSERSVERSHVLRNAWLPIITATGM 240
Cdd:PRK10352 161 YLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAVGM 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489055692 241 HIGELIGGTLVIESIFGWPGVGRYAVSAILNRDYPVIQCFTLVMVTIFVICNLIVDVVYAWADPRIRLSAEGAE 314
Cdd:PRK10352 241 HIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEGAHA 314
|
|
| nickel_nikB |
TIGR02789 |
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ... |
1-307 |
1.23e-154 |
|
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131836 [Multi-domain] Cd Length: 314 Bit Score: 434.96 E-value: 1.23e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 1 MFAFIIRRVILLVPMLFGASLVIFLMLRLGPSDPAMDYLRLSKVPPTPQALESARQMLGLDRAITTQYFDWLGKALHGDF 80
Cdd:TIGR02789 1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLRLSHIPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 81 GISFATQRPVLPDLLYFLPATLQLAGVALVLTLGLSIPLGMWAARHREGWQDQVVRFVAFLGVSMPNFWLGFLLVLVFSI 160
Cdd:TIGR02789 81 GISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 161 QLGWLPPMGRGGFAHMIMPAIAISFMSLSINARLLRASMLEVSGQRHVRYARLRGLSERSVERSHVLRNAWLPIITATGM 240
Cdd:TIGR02789 161 YLNLLPTNGAGTWQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALGM 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489055692 241 HIGELIGGTLVIESIFGWPGVGRYAVSAILNRDYPVIQCFTLVMVTIFVICNLIVDVVYAWADPRIR 307
Cdd:TIGR02789 241 HIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIR 307
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
1-309 |
1.45e-132 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 379.03 E-value: 1.45e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 1 MFAFIIRRVILLVPMLFGASLVIFLMLRLGPSDPAMDYLRLSkvpPTPQALESARQMLGLDRAITTQYFDWLGKALHGDF 80
Cdd:COG0601 1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPR---ATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 81 GISFATQRPVLPDLLYFLPATLQLAGVALVLTLGLSIPLGMWAARHREGWQDQVVRFVAFLGVSMPNFWLGFLLVLVFSI 160
Cdd:COG0601 78 GTSFVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 161 QLGWLPPMGR--------GGFAHMIMPAIAISFMSLSINARLLRASMLEVSGQRHVRYARLRGLSERSVERSHVLRNAWL 232
Cdd:COG0601 158 KLGWLPVSGRvspwedflDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALI 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489055692 233 PIITATGMHIGELIGGTLVIESIFGWPGVGRYAVSAILNRDYPVIQCFTLVMVTIFVICNLIVDVVYAWADPRIRLS 309
Cdd:COG0601 238 PVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRLG 314
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
116-307 |
2.29e-31 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 115.86 E-value: 2.29e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 116 SIPLGMWAARHREGWQDQVVRFVAFLGVSMPNFWLGFLLVLVFsiqlgwlppmGRGGFAHMIMPAIAISFMSLSINARLL 195
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA----------ILSILGHGILPAIILALLGWAGYARLI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 196 RASMLEVSGQRHVRYARLRGLSERSVERSHVLRNAWLPIITATGMHIGELIGGTLVIESIFGWPGVGRYAVSAILNRDYP 275
Cdd:pfam00528 71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYP 150
|
170 180 190
....*....|....*....|....*....|..
gi 489055692 276 VIQCFTLVMVTIFVICNLIVDVVYAWADPRIR 307
Cdd:pfam00528 151 EIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
98-290 |
9.84e-20 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 85.02 E-value: 9.84e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 98 LPATLQLAGVALVLTLGLSIPLGMWAARHReGWQDQVVRFVAFLGVSMPNFWLGFLLVLVFSIQLGWlppmgrGGFAHMI 177
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKR-GKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------GILPGLG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 178 MPAIAISFMSLSINARLLRASMLEVSGQRHVRYARLRGLSERSVERSHVLRNAWLPIITATGMHIGELIGGTLVIESIFG 257
Cdd:cd06261 74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153
|
170 180 190
....*....|....*....|....*....|....*..
gi 489055692 258 ----WPGVGRYAVSAILNRDYPVIQCFTLVMVTIFVI 290
Cdd:cd06261 154 geapGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10352 |
PRK10352 |
nickel transporter permease NikB; Provisional |
1-314 |
0e+00 |
|
nickel transporter permease NikB; Provisional
Pssm-ID: 182400 [Multi-domain] Cd Length: 314 Bit Score: 554.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 1 MFAFIIRRVILLVPMLFGASLVIFLMLRLGPSDPAMDYLRLSKVPPTPQALESARQMLGLDRAITTQYFDWLGKALHGDF 80
Cdd:PRK10352 1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 81 GISFATQRPVLPDLLYFLPATLQLAGVALVLTLGLSIPLGMWAARHREGWQDQVVRFVAFLGVSMPNFWLGFLLVLVFSI 160
Cdd:PRK10352 81 GISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 161 QLGWLPPMGRGGFAHMIMPAIAISFMSLSINARLLRASMLEVSGQRHVRYARLRGLSERSVERSHVLRNAWLPIITATGM 240
Cdd:PRK10352 161 YLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAVGM 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489055692 241 HIGELIGGTLVIESIFGWPGVGRYAVSAILNRDYPVIQCFTLVMVTIFVICNLIVDVVYAWADPRIRLSAEGAE 314
Cdd:PRK10352 241 HIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEGAHA 314
|
|
| nickel_nikB |
TIGR02789 |
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ... |
1-307 |
1.23e-154 |
|
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131836 [Multi-domain] Cd Length: 314 Bit Score: 434.96 E-value: 1.23e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 1 MFAFIIRRVILLVPMLFGASLVIFLMLRLGPSDPAMDYLRLSKVPPTPQALESARQMLGLDRAITTQYFDWLGKALHGDF 80
Cdd:TIGR02789 1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLRLSHIPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 81 GISFATQRPVLPDLLYFLPATLQLAGVALVLTLGLSIPLGMWAARHREGWQDQVVRFVAFLGVSMPNFWLGFLLVLVFSI 160
Cdd:TIGR02789 81 GISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 161 QLGWLPPMGRGGFAHMIMPAIAISFMSLSINARLLRASMLEVSGQRHVRYARLRGLSERSVERSHVLRNAWLPIITATGM 240
Cdd:TIGR02789 161 YLNLLPTNGAGTWQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALGM 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489055692 241 HIGELIGGTLVIESIFGWPGVGRYAVSAILNRDYPVIQCFTLVMVTIFVICNLIVDVVYAWADPRIR 307
Cdd:TIGR02789 241 HIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIR 307
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
1-309 |
1.45e-132 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 379.03 E-value: 1.45e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 1 MFAFIIRRVILLVPMLFGASLVIFLMLRLGPSDPAMDYLRLSkvpPTPQALESARQMLGLDRAITTQYFDWLGKALHGDF 80
Cdd:COG0601 1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPR---ATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 81 GISFATQRPVLPDLLYFLPATLQLAGVALVLTLGLSIPLGMWAARHREGWQDQVVRFVAFLGVSMPNFWLGFLLVLVFSI 160
Cdd:COG0601 78 GTSFVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 161 QLGWLPPMGR--------GGFAHMIMPAIAISFMSLSINARLLRASMLEVSGQRHVRYARLRGLSERSVERSHVLRNAWL 232
Cdd:COG0601 158 KLGWLPVSGRvspwedflDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALI 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489055692 233 PIITATGMHIGELIGGTLVIESIFGWPGVGRYAVSAILNRDYPVIQCFTLVMVTIFVICNLIVDVVYAWADPRIRLS 309
Cdd:COG0601 238 PVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRLG 314
|
|
| PRK15081 |
PRK15081 |
glutathione ABC transporter permease GsiC; Provisional |
1-307 |
3.15e-70 |
|
glutathione ABC transporter permease GsiC; Provisional
Pssm-ID: 185039 [Multi-domain] Cd Length: 306 Bit Score: 220.36 E-value: 3.15e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 1 MFAFIIRRVILLVPMLFGASLVIFLMLRLGPSDPAmdylRLSKVPPTPQA-LESARQMLGLDRAITTQYFDWLGKALHGD 79
Cdd:PRK15081 1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPA----RLAAGPEADAQvVALVRQQLGLDQPLPHQFWHYISNALQGD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 80 FGISFATQRPVLPDL-LYFLPaTLQLAGVALVLTLGLSIPLGMWAARHREGWQDQVVRFVAFLGVSMPNFWLGFLLVLVF 158
Cdd:PRK15081 77 FGTSMVSRRPVSEEIaSRFMP-TLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVF 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 159 SIQLGWLPPMGRGGFAHMIMPAIAISFMSLSINARLLRASMLEVSGQRHVRYARLRGLSERSVERSHVLRNAWLPIITAT 238
Cdd:PRK15081 156 SVELGWLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMM 235
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489055692 239 GMHIGELIGGTLVIESIFGWPGVGRYAVSAILNRDYPVIQCFTLVMVTIFVICNLIVDVVYAWADPRIR 307
Cdd:PRK15081 236 GLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
|
|
| SapB |
COG4168 |
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms]; |
1-307 |
6.13e-68 |
|
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
Pssm-ID: 443329 [Multi-domain] Cd Length: 321 Bit Score: 214.70 E-value: 6.13e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 1 MFAFIIRRVILLVPMLFGASLVIFLMLRLGPSDPAMDylrlskvpptpqalesarqmlgldRAITTQYFDWLGKALHGDF 80
Cdd:COG4168 1 MLIYLLRRLNLLLITLLILSLISFSLLYRDPLNPLSD------------------------ASLFSGYLFYLQNLLQGDF 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 81 GISFATQRPVLPDLLYFLPATLQLAGVALVLTLGLSIPLGMWAARHREGWQDQVVRFVAFLGVSMPNFWLGFLLVLVFSI 160
Cdd:COG4168 57 GISSINGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIPVFWLALLLILFFSL 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 161 QLGWLPPMGR----------GGFA---------------------HMIMPAIAISFMSLSINARLLRASMLEVSGQRHVR 209
Cdd:COG4168 137 NLGWLPVSGRynllyeippvTGFAlidawlsdspyrlkaiqsalqHLILPTLVLAVAPTTEVIRLTRQSTEEVMNQNYIK 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 210 YARLRGLSERSVERSHVLRNAWLPIITATGMHIGELIGGTLVIESIFGWPGVGRYAVSAILNRDYPVIQCFTLVMVTIFV 289
Cdd:COG4168 217 AAATRGLSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEVVFSWPGIGRWLINAIRQQDYAAISAGVIVIGTFVI 296
|
330
....*....|....*...
gi 489055692 290 ICNLIVDVVYAWADPRIR 307
Cdd:COG4168 297 IVNILSDILGALLNPLKR 314
|
|
| oppB |
PRK09471 |
oligopeptide ABC transporter permease OppB; |
1-307 |
3.36e-60 |
|
oligopeptide ABC transporter permease OppB;
Pssm-ID: 181886 [Multi-domain] Cd Length: 306 Bit Score: 194.51 E-value: 3.36e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 1 MFAFIIRRVILLVPMLFGASLVIFLMLRLGPSDPAMdylrlSKVPPTPQALESARQMLGLDRAITTQYFDWLGKALHGDF 80
Cdd:PRK09471 1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFT-----GERTLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDF 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 81 GISFATQRPVLPDLL-YFLPATLQLAGVALVLTLGLSIPLGMWAARHREGWQDQVVRFVAFLGVSMPNFWLGFLLVLVFS 159
Cdd:PRK09471 76 GPSFKYKDYSVNDLVaSSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 160 IQLGWLPPMG--RGGFAHMIMPAIAISFMSLSINARLLRASMLEVSGQRHVRYARLRGLSERSVERSHVLRNAWLPIITA 237
Cdd:PRK09471 156 ITLHWLPGGGwnGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSY 235
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 238 TGMHIGELIGGTLVIESIFGWPGVGRYAVSAILNRDYPVIQCFTLVMVTIFVICNLIVDVVYAWADPRIR 307
Cdd:PRK09471 236 MGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305
|
|
| PRK10914 |
PRK10914 |
dipeptide ABC transporter permease DppB; |
1-307 |
8.93e-60 |
|
dipeptide ABC transporter permease DppB;
Pssm-ID: 182834 [Multi-domain] Cd Length: 339 Bit Score: 194.26 E-value: 8.93e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 1 MFAFIIRRVILLVPMLFGASLVIFLMLRLGPSDPAMDYLRLSKVPPTPQALESArqMLGLDRAITTQYFDWLGKALHGDF 80
Cdd:PRK10914 1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLA--ELGLDKPMWQQYLHYIWGVMHGDL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 81 GISFATQRPVLPDLLYFLPATLQLAGVALVLTLGLSIPLGMWAARHREGWQDQVVRFVAFLGVSMPNFWLGFLLVLVFSI 160
Cdd:PRK10914 79 GISLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 161 QLGWLPPMGR---------------------------GGF----AHMIMPAIAISFMSLSINARLLRASMLEVSGQRHVR 209
Cdd:PRK10914 159 HWNLTPVSGRvsdmvflddsnpltgfmlidtaiwgedGNFidavAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIR 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 210 YARLRGLSERSVERSHVLRNAWLPIITATGMHIGELIGGTLVIESIFGWPGVGRYAVSAILNRDYPVIQCFTLVMVTIFV 289
Cdd:PRK10914 239 TARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMII 318
|
330
....*....|....*...
gi 489055692 290 ICNLIVDVVYAWADPRIR 307
Cdd:PRK10914 319 LVNLLVDLLYGVVNPRIR 336
|
|
| PRK15110 |
PRK15110 |
peptide ABC transporter permease SapB; |
1-304 |
1.64e-48 |
|
peptide ABC transporter permease SapB;
Pssm-ID: 185065 [Multi-domain] Cd Length: 321 Bit Score: 164.48 E-value: 1.64e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 1 MFAFIIRRVILLVPMLFGASLVIFLMLRLGPSDPamdylrlskvpptpqaLESArqmlgldrAITTQYFDWLGKALHGDF 80
Cdd:PRK15110 1 MIIFTLRRLLLLIVTLFLLTLVGFSLSYFTPHAP----------------LQGA--------SLWDAWVFWFNGLLHWDF 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 81 GISFATQRPVLPDLLYFLPATLQLAGVALVLTLGLSIPLGMWAARHREGWQDQVVRFVAFLGVSMPNFWLGFLLVLVFSI 160
Cdd:PRK15110 57 GVSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSL 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 161 QLGWLPPMGR----------GGFA---------------------HMIMPAIAISFMSLSINARLLRASMLEVSGQRHVR 209
Cdd:PRK15110 137 TLGWLPVSGRfdllyevkpvTGFAlidawlsdspwrdemimsairHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVK 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 210 YARLRGLSERSVERSHVLRNAWLPIITATGMHIGELIGGTLVIESIFGWPGVGRYAVSAILNRDYPVIQCFTLVMVTIFV 289
Cdd:PRK15110 217 AAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVI 296
|
330
....*....|....*
gi 489055692 290 ICNLIVDVVYAWADP 304
Cdd:PRK15110 297 IVNVLSDILGAMANP 311
|
|
| YejB |
COG4174 |
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ... |
1-313 |
1.94e-36 |
|
ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443333 [Multi-domain] Cd Length: 363 Bit Score: 133.77 E-value: 1.94e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 1 MFAFIIRRVILLVPMLFGASLVIFLMLRL---GPSDPAMDYLRLSKVPPT-----------------------------P 48
Cdd:COG4174 1 MGAYILRRLLLMIPTLLGIMLINFVIVQFapgGPVEQVIAQLQGTGGGATgrisggggdagggaaagggskyrgargldP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 49 QALESARQMLGLDRAITTQYFDWLGKALHGDFGISFATQRPVLPDLLYFLPATLQLAGVALVLTLGLSIPLGMWAARHRE 128
Cdd:COG4174 81 EFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAVRDG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 129 GWQDQVVRFVAFLGVSMPNFWLGFLLVLVFS-------------IQLGW--LPPMGRGG--FAHMIMPAIAI---SFMSL 188
Cdd:COG4174 161 SRFDVWTSTVIIVGYAIPGFLFAILLIVLFAggsyfdwfplrglTSDNWdqLSWWGKILdyLWHLTLPVTAMvigGFATL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 189 SInarLLRASMLEVSGQRHVRYARLRGLSERSVERSHVLRNAWLPIITA-TGMHIGELIGGTLVIESIFGWPGVGRYAVS 267
Cdd:COG4174 241 TL---LTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIAGfPAAFIGAFFTGSLLIETIFSLDGLGLLGFE 317
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 489055692 268 AILNRDYPVIqcF-TLVMVT-IFVICNLIVDVVYAWADPRIRLSAEGA 313
Cdd:COG4174 318 AVVNRDYPVV--FgTLYIFTlIGLVLKLISDLTYVLVDPRIDFEAREV 363
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
116-307 |
2.29e-31 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 115.86 E-value: 2.29e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 116 SIPLGMWAARHREGWQDQVVRFVAFLGVSMPNFWLGFLLVLVFsiqlgwlppmGRGGFAHMIMPAIAISFMSLSINARLL 195
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA----------ILSILGHGILPAIILALLGWAGYARLI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 196 RASMLEVSGQRHVRYARLRGLSERSVERSHVLRNAWLPIITATGMHIGELIGGTLVIESIFGWPGVGRYAVSAILNRDYP 275
Cdd:pfam00528 71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYP 150
|
170 180 190
....*....|....*....|....*....|..
gi 489055692 276 VIQCFTLVMVTIFVICNLIVDVVYAWADPRIR 307
Cdd:pfam00528 151 EIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
|
|
| PRK15133 |
PRK15133 |
microcin C ABC transporter permease YejB; Provisional |
1-306 |
5.05e-20 |
|
microcin C ABC transporter permease YejB; Provisional
Pssm-ID: 185087 [Multi-domain] Cd Length: 364 Bit Score: 89.04 E-value: 5.05e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 1 MFAFIIRRVILLVPMLFGASLVIFLMLRLGPSDP------------------------AMDYLRLSKVPPT--------- 47
Cdd:PRK15133 1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPvdqaiaaiefgqagglpgaggegvRASHAQTGVGNISdsnyrggrg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 48 --PQALESARQMLGLDRAITTQYFDWLGKALHGDFGISFATQRPVLPDLLYFLPATLQLAGVALVLTLGLSIPLGMWAAR 125
Cdd:PRK15133 81 ldPEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 126 HREGWQDQVVRFVAFLGVSMPNFWLGFLLVLVFS--IQLGWLPPMGRGG---------------FAHMIMPAIAISFMSL 188
Cdd:PRK15133 161 RNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGLVSanfdslpwyqkitdyLWHITLPVLATVIGGF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 189 SINARLLRASMLEVSGQRHVRYARLRGLSERSVERSHVLRNAWLPIITA-TGMHIGELIGGTLVIESIFGWPGVGRYAVS 267
Cdd:PRK15133 241 AALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGfPATFISMFFTGSLLIEVMFSLNGLGLLGYE 320
|
330 340 350
....*....|....*....|....*....|....*....
gi 489055692 268 AILNRDYPVIQCFTLVMVTIFVICNLIVDVVYAWADPRI 306
Cdd:PRK15133 321 ATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
98-290 |
9.84e-20 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 85.02 E-value: 9.84e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 98 LPATLQLAGVALVLTLGLSIPLGMWAARHReGWQDQVVRFVAFLGVSMPNFWLGFLLVLVFSIQLGWlppmgrGGFAHMI 177
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKR-GKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------GILPGLG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 178 MPAIAISFMSLSINARLLRASMLEVSGQRHVRYARLRGLSERSVERSHVLRNAWLPIITATGMHIGELIGGTLVIESIFG 257
Cdd:cd06261 74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153
|
170 180 190
....*....|....*....|....*....|....*..
gi 489055692 258 ----WPGVGRYAVSAILNRDYPVIQCFTLVMVTIFVI 290
Cdd:cd06261 154 geapGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1_N |
pfam19300 |
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ... |
1-105 |
9.77e-18 |
|
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.
Pssm-ID: 437132 [Multi-domain] Cd Length: 114 Bit Score: 77.26 E-value: 9.77e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 1 MFAFIIRRVILLVPMLFGASLVIFLMLRLGPSDPAMdyLRLSKVPpTPQALESARQMLGLDRAITTQYFDWLGKALHGD- 79
Cdd:pfam19300 1 MLRFLVRRTLGAVVILLIISAVTFFLFYAIPRDPAR--LACGKNC-TPETLALIRHNLGLDKPIPVQYWHFLSGIFAGRd 77
|
90 100 110
....*....|....*....|....*....|....*..
gi 489055692 80 -----------FGISFATQRPVLPDLLYFLPATLQLA 105
Cdd:pfam19300 78 fgavghcpapcLGYSFANNEPVWDTIMDRFPTTLSLA 114
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
88-246 |
1.43e-09 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 57.82 E-value: 1.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489055692 88 RPVLPDLLYFLPATLQLAGVALVLTLGLSIPLGMWAARHReGWQDQVVRFVAFLGVSMPnfwlGFLLVLVFSIQLGwlpp 167
Cdd:COG1173 68 RDVLSRLLYGARISLLVGLLAVLIALVIGVLLGLLAGYFG-GWVDAVLMRLVDVLLAFP----SLLLAIALVAVLG---- 138
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489055692 168 mgrGGFAHMImpaIAISFMSLSINARLLRASMLEVSGQRHVRYARLRGLSERSVERSHVLRNAWLPIITATGMHIGELI 246
Cdd:COG1173 139 ---PGLLNVI---LALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAI 211
|
|
| |
