|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
31-317 |
1.05e-63 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 204.18 E-value: 1.05e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 31 SLTLRGFGAYGHLRYLLELAAVIGIVAAGQTLVIIVGGIDLSVGAVMTVTAILLPVISPDWDPTGLLGVVMVLAIAAIIG 110
Cdd:COG1172 33 SILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALGLPILLAILLALLVGALLG 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 111 AVNGIGAAWLRVPPIIMTLAMATFLQGLLVIVAGGSAVSVNNAAAIFLGSARPFGIPASIILWVAVTAVVLVLLHKMPTG 190
Cdd:COG1172 113 LLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLLGIPVPVLIALVVALVAWFLLRRTRFG 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 191 ARFLALGANPVATRLSGVNVNRNMVALYALSAFFAGLAGIVLLGMNRQGYVGIGEPYVLLSIAAVVLGGTSILGGRGTYA 270
Cdd:COG1172 193 RYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVL 272
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 489058846 271 GTIPGAILLVTTTALITMVNASPGLRSILFGSLILGLLMISGREARR 317
Cdd:COG1172 273 GTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRR 319
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
50-311 |
9.52e-59 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 189.16 E-value: 9.52e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 50 AAVIGIVAAGQTLVIIVGGIDLSVGAVMTVTAILLPVISPDWDPTGLLGVVMVLAIAAIIGAVNGIGAAWLRVPPIIMTL 129
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 130 AMATFLQGLLVIVAGGSAVSVNN-AAAIFLGSARPFGIPASIILWVAVTAVVLVLLHKMPTGARFLALGANPVATRLSGV 208
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPpLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 209 NVNRNMVALYALSAFFAGLAGIVLLGMNRQGYVGIGEPYVLLSIAAVVLGGTSILGGRGTYAGTIPGAILLVTTTALITM 288
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 489058846 289 VNASPGLRSILFGSLILGLLMIS 311
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
46-279 |
2.49e-33 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 124.83 E-value: 2.49e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 46 LLELAAVIGIVAAGQTLVIIVGGIDLSVGAVMTVT-AILLPVISPDWDptGLLGVVMVLAIAAIIGAVNGIGAAWLRVPP 124
Cdd:PRK09512 48 ILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTgAVAASIVGIEVN--ALVAVPAALALGAAIGAVTGVIVAKGKVQA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 125 IIMTLAMATFLQGLLVIVAGGSAVSV--NNAAAIF--LGSARPFGIPASIILWVAVTAVVLVLLHKMPTGARFLALGANP 200
Cdd:PRK09512 126 FIATLVMMLLLRGVTMVYTDGSPINTgfTDNADLFgwFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNE 205
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489058846 201 VATRLSGVNVNRNMVALYALSAFFAGLAGIVLLGMNRQGYVGIGEPYVLLSIAAVVLGGTSILGGRGTYAGTIPGAILL 279
Cdd:PRK09512 206 AATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALIL 284
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
45-308 |
1.03e-15 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 75.76 E-value: 1.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 45 YLLELAAVIGIVAAGQTLVI-IVGGIDLSVGAVMTVTAILLPVISPDWDPTGLLGVVMVLAIAAIIGAVNGIGAAWLRVP 123
Cdd:pfam02653 4 NILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKIN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 124 PIIMTLAMATFLQGLLVIVAGG-----SAVSVNNAAAIFLGSARPFGIPASIILWVAVTAVVLVLLHKMPTGARFLALGA 198
Cdd:pfam02653 84 EVIITLLLNLAALGLALFLVTGilggeGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRAVGE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 199 NPVATRLSGVNVNRNMVALYALSAFFAGLAGIVLLGMNRQGYVGIGEPYVLLSIAAVVlggtsILGGRGTYAGTIPGAIL 278
Cdd:pfam02653 164 NEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNFGVGLGLDAIAAV-----VLGGAGSPIGVVIGSLI 238
|
250 260 270
....*....|....*....|....*....|.
gi 489058846 279 LVTTTAL-ITMVNASPGLRSILFGSLILGLL 308
Cdd:pfam02653 239 IGLVQSLgLGALGSPPELSLLVLGALLILVL 269
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
53-279 |
1.82e-12 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 67.10 E-value: 1.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 53 IGIVAAGQTLVIIVGGIDLSVGAVMTVTAILLPVISPDWDPTGLLGVVMVLAIAAIIGAVNGIGAAWLRVPPIIMTLA-M 131
Cdd:NF040906 42 ILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAgM 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 132 ATFlQGLLVIVAGGSAVS----------------------VNN---------AAAIFLGSAR-------------PF--- 164
Cdd:NF040906 122 LVF-RGLTLVVLGGQSIGpfpdgfqkissgflpdlfggtgLHLltlllgvlaAAALVWSQLRgrrrrikyglevePMalf 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 165 ----------------------GIPASIILWVAVTAVVLVLLHKMPTGARFLALGANPVATRLSGVNVNRNMVALYALSA 222
Cdd:NF040906 201 iaklvliaaailfftyllasyrGLPNVLIILGVLILVYSFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMG 280
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 489058846 223 FFAGLAGIVLLGMNRQGYVGIGEPYVLLSIAAVVLGGTSILGGRGTYAGTIPGAILL 279
Cdd:NF040906 281 VLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVM 337
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
31-317 |
1.05e-63 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 204.18 E-value: 1.05e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 31 SLTLRGFGAYGHLRYLLELAAVIGIVAAGQTLVIIVGGIDLSVGAVMTVTAILLPVISPDWDPTGLLGVVMVLAIAAIIG 110
Cdd:COG1172 33 SILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALGLPILLAILLALLVGALLG 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 111 AVNGIGAAWLRVPPIIMTLAMATFLQGLLVIVAGGSAVSVNNAAAIFLGSARPFGIPASIILWVAVTAVVLVLLHKMPTG 190
Cdd:COG1172 113 LLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLLGIPVPVLIALVVALVAWFLLRRTRFG 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 191 ARFLALGANPVATRLSGVNVNRNMVALYALSAFFAGLAGIVLLGMNRQGYVGIGEPYVLLSIAAVVLGGTSILGGRGTYA 270
Cdd:COG1172 193 RYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVL 272
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 489058846 271 GTIPGAILLVTTTALITMVNASPGLRSILFGSLILGLLMISGREARR 317
Cdd:COG1172 273 GTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRR 319
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
50-311 |
9.52e-59 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 189.16 E-value: 9.52e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 50 AAVIGIVAAGQTLVIIVGGIDLSVGAVMTVTAILLPVISPDWDPTGLLGVVMVLAIAAIIGAVNGIGAAWLRVPPIIMTL 129
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 130 AMATFLQGLLVIVAGGSAVSVNN-AAAIFLGSARPFGIPASIILWVAVTAVVLVLLHKMPTGARFLALGANPVATRLSGV 208
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPpLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 209 NVNRNMVALYALSAFFAGLAGIVLLGMNRQGYVGIGEPYVLLSIAAVVLGGTSILGGRGTYAGTIPGAILLVTTTALITM 288
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 489058846 289 VNASPGLRSILFGSLILGLLMIS 311
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
51-310 |
6.03e-36 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 131.97 E-value: 6.03e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 51 AVIGIV-AAGQTLVIIVGGIDLSVGAVMTVTAILLPVIS--PDWdptGLLGVVMVLAIAAIIGAVNGIGAAWLRVPPIIM 127
Cdd:COG4158 63 ASINIVlAAGMTFVILTGGIDLSVGSILAASAVVAVLVSllPGL---GLLGIPAALLVGLLFGLINGLLIAFLKLPPFIV 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 128 TLAMATFLQGLLVIVAGGSAVSVNNAAAIFLGSARPFGIPASIILWVAVTAVVLVLLHKMPTGARFLALGANPVATRLSG 207
Cdd:COG4158 140 TLGSLTALRGAARLLANGTTVFNPDLPFAWIGNGYLLGIPWLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTG 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 208 VNVNRNMVALYALSAFFAGLAGIV----LLGMNRqgyVGIGEPYVLLSIAAVVLGGTSILGGRGTYAGTIPGAILLVTTT 283
Cdd:COG4158 220 IKVWRVLLFVYAVSGLLAGLGGVMsaarLYAANG---LQLGQGYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLN 296
|
250 260
....*....|....*....|....*..
gi 489058846 284 ALITMVNASPGLRSILFGSLILGLLMI 310
Cdd:COG4158 297 NGLILLGVSDFWQFIIKGLVIIIAVAL 323
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
46-279 |
2.49e-33 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 124.83 E-value: 2.49e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 46 LLELAAVIGIVAAGQTLVIIVGGIDLSVGAVMTVT-AILLPVISPDWDptGLLGVVMVLAIAAIIGAVNGIGAAWLRVPP 124
Cdd:PRK09512 48 ILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTgAVAASIVGIEVN--ALVAVPAALALGAAIGAVTGVIVAKGKVQA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 125 IIMTLAMATFLQGLLVIVAGGSAVSV--NNAAAIF--LGSARPFGIPASIILWVAVTAVVLVLLHKMPTGARFLALGANP 200
Cdd:PRK09512 126 FIATLVMMLLLRGVTMVYTDGSPINTgfTDNADLFgwFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNE 205
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489058846 201 VATRLSGVNVNRNMVALYALSAFFAGLAGIVLLGMNRQGYVGIGEPYVLLSIAAVVLGGTSILGGRGTYAGTIPGAILL 279
Cdd:PRK09512 206 AATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALIL 284
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
30-305 |
5.38e-29 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 113.62 E-value: 5.38e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 30 ASLTLRGFGAYGHLRYLLELAAVIGIVAAGQTLVIIVGGIDLSVGAVMTVTAILLPVISPDWDPTgLLGVVMVLAIAAII 109
Cdd:PRK11285 43 CSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATESL-WLGVAAGLLLGAAV 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 110 GAVNGIGAAWLRVPPIIMTLAMATFLQGLLVIVAGGSAVSVNNAAAIFLGSARPFGIPASIILWVAVTAVVLVLLHKMPT 189
Cdd:PRK11285 122 GLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGISDERFFALGYANFFGVPAPIWLTVACFVVFGFLLNKTTF 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 190 GARFLALGANPVATRLSGVNVNRNMVALYALSAFFAGLAGIVLLGMNRQGYVGIGEPYVLLSIAAVVLGGTSILGGRGTY 269
Cdd:PRK11285 202 GRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVISACVLGGVSLKGGIAKI 281
|
250 260 270
....*....|....*....|....*....|....*.
gi 489058846 270 AGTIPGAILLVTTTALITMVNASPGLRSILFGSLIL 305
Cdd:PRK11285 282 SGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILL 317
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
51-287 |
1.30e-26 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 106.58 E-value: 1.30e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 51 AVIGIVAAGQTLVIIVGGIDLSVGAVMTVTAILLPVISPDWDPTGLLGVVMVLAIAAIIGAVNGIGAAWLRVPPIIMTLA 130
Cdd:PRK11618 43 AFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYGWSPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLA 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 131 MATFLQGLLVIVAGGSA-------VSVNNAAAIFLGSARpfgIPASIILWVAVTAVVLVLLHKMPTGARFLALGANPVAT 203
Cdd:PRK11618 123 GMFLARGVSFLVSEESIpinhpfyDTLSSLAWKLPGGGR---LSAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSA 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 204 RLSGVNVNRNMVALYALSAFFAGLAGIVLLGMNRQGYVGIGEPYVLLSIAAVVLGGTSILGGRGTYAGTIPGAILLVTTT 283
Cdd:PRK11618 200 NLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQ 279
|
....
gi 489058846 284 ALIT 287
Cdd:PRK11618 280 TYIT 283
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
50-277 |
3.20e-24 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 101.35 E-value: 3.20e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 50 AAVIGIVAAGQTLVIIVGGIDLSVGAVMTVTAILLPVISPDWDPTGLLGVVMVLAIAAIIGAVNGIGAAWLRVPPIIMTL 129
Cdd:COG4214 59 NSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMVNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTL 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 130 AMATFLQGLLVIVAGGSAVSVNN-------------------------AAAIFLGS--------------ARPF------ 164
Cdd:COG4214 139 AGMLAFRGLTLLVLGGGTIAPFDptfqaigngflpdilgtlswvlgavAVAAYVALqlrsrrrrrryglpVEPLwlfvlk 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 165 -------------------GIPASIILWVAVTAVVLVLLHKMPTGARFLALGANPVATRLSGVNVNRNMVALYALSAFFA 225
Cdd:COG4214 219 lallavlilgavyllnsyrGIPIVVLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLA 298
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 489058846 226 GLAGIVLLGMNRQGYVGIGEPYVLLSIAAVVLGGTSILGGRGTYAGTIPGAI 277
Cdd:COG4214 299 ALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGGVGTVYGAVIGAL 350
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
43-305 |
5.27e-20 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 88.59 E-value: 5.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 43 LRYLLELAAVIGIVAAGQTLVIIVGGIDLS----VGAVMTVTAILLPVIS------PDWDPTGLLGVVM-VLAIAAIIGA 111
Cdd:PRK09478 42 LSNILTQSSVRIIIALGVAGLIVTQGTDLSagrqVGLAAVVAATLLQSMDnankvfPELATMPIALVILiVCAIGAVIGL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 112 VNGIGAAWLRVPPIIMTLAMATFLQGLLVI---VAGGSAVS--VNNAAAIFLGSAR--PFGIPASIILWVAVTAVVLVLL 184
Cdd:PRK09478 122 INGLIIAYLNVTPFIATLGTMIIVYGINSLyydFVGASPISgfDSGFSTFAQGFVAlgSFRLSYITFYALIAVAFVWVLW 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 185 HKMPTGARFLALGANPVATRLSGVNVNRNMVALYALSAFFAGLAGIVLLGMNRQGYVGIGEPYVLLSIAAVVLGGTSILG 264
Cdd:PRK09478 202 NKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSG 281
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 489058846 265 GRGTYAGTIPGAILLVTTTALITMVNASPGLRSILFGSLIL 305
Cdd:PRK09478 282 GVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIII 322
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
37-305 |
8.17e-20 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 87.91 E-value: 8.17e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 37 FGAYGHLRYLLELAAVIGIVAAGQTLVIIVGGIDLSVGAVMTVTAIL---LPVISPDWDPTGLLGVVMVlaiAAIIGAVN 113
Cdd:PRK09699 33 FLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVtakLMLAGVDPFLAALIGGVLV---GGALGAIN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 114 GIGAAWLRVPPIIMTLAMATFLQGLLVIVAGGSAVSVNNAAAIFLGSARPFGIPASIILWVAVTAVVLVLLHKMPTGARF 193
Cdd:PRK09699 110 GCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVIGIPVPVIFSLIVALILWFLTTRMRLGRNI 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 194 LALGANPVATRLSGVNVNRNMVALYALSAFFAGLAGIVLLGMNRQGYVGIGEPYVLLSIAAVVLGGTSILGGRGTYAGTI 273
Cdd:PRK09699 190 YALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVV 269
|
250 260 270
....*....|....*....|....*....|..
gi 489058846 274 PGAILLVTTTALITMVNASPGLRSILFGSLIL 305
Cdd:PRK09699 270 IGGLIIGTINNGLNILQVQTYYQLVVMGGLII 301
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
50-313 |
1.78e-17 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 81.70 E-value: 1.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 50 AAVIGIVAAGQTLVIIVGGIDLSVGAVMTVTAILLPViSPDWDPTGLLGVVMVLAIAAIIGAVNGIGAAWLRVPPIIMTL 129
Cdd:PRK15432 44 AQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGM-LLNAGYSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 130 AMATFLQGLLVIVAGGSAVSVNNAAAIFLGSARPFGIPASIILWVAVTAVVLVLLHKMPTGARFLALGANPVATRLSGVN 209
Cdd:PRK15432 123 GTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPILLGISPIGWLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVR 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 210 VNRNMVALYALSAFFAGLAGIVLlgMNRQGYV--GIGEPYVLLSIAAVVLGGTSILGGRGTYAGTIPGAILLVTTTALIT 287
Cdd:PRK15432 203 TEAIRIVAFSLNGCMAALAGIVF--ASQIGFIpnQTGTGLEMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLV 280
|
250 260
....*....|....*....|....*.
gi 489058846 288 MVNASPGLRSILFGSLILGLLMISGR 313
Cdd:PRK15432 281 LLRIPAWWNDFIAGLVLLGVLVFDGR 306
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
45-308 |
1.03e-15 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 75.76 E-value: 1.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 45 YLLELAAVIGIVAAGQTLVI-IVGGIDLSVGAVMTVTAILLPVISPDWDPTGLLGVVMVLAIAAIIGAVNGIGAAWLRVP 123
Cdd:pfam02653 4 NILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKIN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 124 PIIMTLAMATFLQGLLVIVAGG-----SAVSVNNAAAIFLGSARPFGIPASIILWVAVTAVVLVLLHKMPTGARFLALGA 198
Cdd:pfam02653 84 EVIITLLLNLAALGLALFLVTGilggeGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRAVGE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 199 NPVATRLSGVNVNRNMVALYALSAFFAGLAGIVLLGMNRQGYVGIGEPYVLLSIAAVVlggtsILGGRGTYAGTIPGAIL 278
Cdd:pfam02653 164 NEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNFGVGLGLDAIAAV-----VLGGAGSPIGVVIGSLI 238
|
250 260 270
....*....|....*....|....*....|.
gi 489058846 279 LVTTTAL-ITMVNASPGLRSILFGSLILGLL 308
Cdd:pfam02653 239 IGLVQSLgLGALGSPPELSLLVLGALLILVL 269
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
53-305 |
4.24e-15 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 74.48 E-value: 4.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 53 IGIVAAGQTLVIIVGGIDLSVGAVMTVTAILLPVISPDWDPTGLlGVVMVLAIAAIIGAVNGIGAAWLRVPPIIMTLAMA 132
Cdd:PRK15038 45 IGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPL-AILLTLLLGALCGLINAGLIIYTGVNPLVITLGTL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 133 TFLQGLLVIVAGGSAVSVNNAAAIF------LGSARPFGIPASIILWVAVTAVVLVLLHKMPTGARFLALGANPVATRLS 206
Cdd:PRK15038 124 YLFGGSALLLSGMAGATGYEGIGGFpmaftdFANLDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYS 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 207 GVNVNRNMVALYALSAFFAGLAGIVLLGMNRQGYVGIGEPYVLLSIAAVVLGGTSILGGRGTYAGTIPGAILLVTTTALI 286
Cdd:PRK15038 204 AIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGL 283
|
250
....*....|....*....
gi 489058846 287 TMVNASPGLRSILFGSLIL 305
Cdd:PRK15038 284 QMAGVPNQISSALSGALLI 302
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
53-279 |
1.82e-12 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 67.10 E-value: 1.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 53 IGIVAAGQTLVIIVGGIDLSVGAVMTVTAILLPVISPDWDPTGLLGVVMVLAIAAIIGAVNGIGAAWLRVPPIIMTLA-M 131
Cdd:NF040906 42 ILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAgM 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 132 ATFlQGLLVIVAGGSAVS----------------------VNN---------AAAIFLGSAR-------------PF--- 164
Cdd:NF040906 122 LVF-RGLTLVVLGGQSIGpfpdgfqkissgflpdlfggtgLHLltlllgvlaAAALVWSQLRgrrrrikyglevePMalf 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 165 ----------------------GIPASIILWVAVTAVVLVLLHKMPTGARFLALGANPVATRLSGVNVNRNMVALYALSA 222
Cdd:NF040906 201 iaklvliaaailfftyllasyrGLPNVLIILGVLILVYSFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMG 280
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 489058846 223 FFAGLAGIVLLGMNRQGYVGIGEPYVLLSIAAVVLGGTSILGGRGTYAGTIPGAILL 279
Cdd:NF040906 281 VLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVM 337
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
52-305 |
9.41e-11 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 61.14 E-value: 9.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 52 VIGIVAAGQTLVIIVGGIDLSVGAVMTVTAILLPVISPDWDPTGLLGVVMVLAIAAIIGAVNGIGAAWLRVPPIIMTLAM 131
Cdd:cd06574 3 IYAILALGVYIVFRILGFPDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 132 ATFLQGLLVIVAGGSAVSVNNAAAIF-----LGSARPFGIPASIILWVAVTAVVLVLLHKMPTGARFLALGANPVATRLS 206
Cdd:cd06574 83 MIGLYSINLRIMGGPNIPLGTRDTLLgllllFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 207 GVNVNRNMVALYALSAFFAGLAGIVLLGMNRQGYVGIGEPYVLLSIAAVVLGGTSILGGRGTYA--GTIPGAILLVTTTA 284
Cdd:cd06574 163 GINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRRTIKASilGVIIGAILYRIALA 242
|
250 260
....*....|....*....|.
gi 489058846 285 LITMVNASPGLRSILFGSLIL 305
Cdd:cd06574 243 LALGSGLIPSDLKLITAGVIV 263
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
47-310 |
6.77e-10 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 58.92 E-value: 6.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 47 LELAAVIGIVAAGQTLVIIVGG-IDLSVGAVMTVTAILLPVISPDWDPTGLLGVVMVLAIAAIIGAVNGIGA-AWLR--- 121
Cdd:COG0559 12 LSLGSIYALIALGLTLIFGVMGvINFAHGEFVMLGAYVAYTLATLLGLPLWLALLLAVLVAALLGVLLERLViRPLRgap 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 122 -VPPIIMTLAMATFLQGLLVIVAGGSAVSVN-------NAAAIFLGSARPFGIPASIILwvavTAVVLVLLHKMPTGARF 193
Cdd:COG0559 92 pLALLLATIGLSLVLQGLVLLIFGADPRSFPallsgsvELGGVSIPAYRLFIIVVALVL----LAALWLFLRRTRLGLAM 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 194 LALGANPVATRLSGVNVNRNMVALYALSAFFAGLAGiVLLGMNRQGYVGIGEPYVLLSIAAVVLGGTsilggrGTYAGTI 273
Cdd:COG0559 168 RAVAQNREAARLMGINVDRVIALTFALGAALAGLAG-VLLAPIYSVSPTMGFLLGLKAFAAVVLGGL------GSIPGAV 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 489058846 274 PGAILLVTTTALITMVnASPGLRSILFGSLILGLLMI 310
Cdd:COG0559 241 VGGLLLGLAESLGAAY-LPSGYKDVVAFVLLILVLLV 276
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
50-309 |
2.60e-09 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 57.07 E-value: 2.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 50 AAVIGIVAAGQTLVIIVGG-IDLSVGAVMTVTAILLPVISPDWDPTGLLGVVMVLAIAAIIGAVngIGAAWLRVPPI--- 125
Cdd:cd06581 1 ILIYAILALGLNLLLGYAGqLSLGHAAFFGIGAYTAALLATRLGLPFWLALLAAGLVAALVGLL--LGLPALRLRGVyfa 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 126 IMTLAMATFLQGLLV----IVAGGSAVSVNNAAAIFLGS-ARPFGIPASIILWVAVTAVVLVLLHKMPTGARFLALGANP 200
Cdd:cd06581 79 IATLAFAEIVRLLALnwssLTGGSNGLSGIPPPLLGGLLlSSPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIRENE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 201 VATRLSGVNVNRNMVALYALSAFFAGLAGiVLLGMNrQGYVGIGEPYVLLSIAAVVLggtSILGGRGTYAGTIPGAILLV 280
Cdd:cd06581 159 VAAEALGINVTRYKLLAFALSAALAGLAG-ALYAHY-LGFVSPESFGFALSIELLLM---VVLGGLGSLLGPVLGAALLV 233
|
250 260
....*....|....*....|....*....
gi 489058846 281 TTTALITMVNasPGLRSILFGSLILGLLM 309
Cdd:cd06581 234 LLPELLRSLG--PGLRLLVFGLLLILVVL 260
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
45-309 |
1.07e-08 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 55.09 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 45 YLLELAAVIGIVAAGQTLVIIVGG-IDLSVGAVMTVTAILLPVISPDWDPTGLLGVVMVLAIAAIIGAVNGIGAAWLRVP 123
Cdd:COG4177 6 SLLTLILIYAILALGLNLLLGYTGlLSLGHAAFFGIGAYAAALLTTHLGLPFWLALLLAGLVAALLGLLIGLPALRLRGD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 124 P-IIMTLAMATFLQGLLVI---VAGGSA--VSVNNAAAIFLGSARPFGIPASIILWVAVTAVVLVLLHKMPTGARFLALG 197
Cdd:COG4177 86 YlAIATLAFAEIVRLLALNlesLTGGADglSGIPRPTLFGLDLGSPLAFYYLVLALLVLVLLLLRRLVRSRFGRALRAIR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 198 ANPVATRLSGVNVNRNMVALYALSAFFAGLAGiVLLGMNrQGYVGIGEPYVLLSIAAVVLggtSILGGRGTYAGTIPGAI 277
Cdd:COG4177 166 ENEIAAEALGINVTRYKLLAFVLSAALAGLAG-ALYAHY-VGFVSPESFSFLLSIEILLM---VVLGGLGSLLGPVLGAV 240
|
250 260 270
....*....|....*....|....*....|..
gi 489058846 278 LLvttTALITMVNASPGLRSILFGSLILGLLM 309
Cdd:COG4177 241 LL---VLLPELLRSLPEYRLLIFGLLLILVVL 269
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
49-308 |
5.73e-07 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 50.12 E-value: 5.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 49 LAAVIGIVAAGQTLVIIVGG-IDLSVGAVMTVTAILLPVISPDWDPTGLLGVVMVLAIAAIIG-AVNGIGAAWLR---VP 123
Cdd:cd06582 4 LGAIYALIALGLTLIFGVTGvINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGvLLERLVLRPLRgapLL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 124 PIIMTLAMATFLQGLLVIVAGGSAVSVNNAAAIFLGSARPFGIPA----SIILWVAVTAVVLVLLHKMPTGARFLALGAN 199
Cdd:cd06582 84 TLLITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTIPPyrlfIIAVALVLLAALYLFLRRTRLGRAIRAVAQN 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 200 PVATRLSGVNVNRNMVALYALSAFFAGLAGiVLLGMNRQGYVGIGEPYVLLSIAAVVLGGTsilggrGTYAGTIPGAILL 279
Cdd:cd06582 164 PEAARLLGINVRRVFALTFALGAALAGLAG-VLLAPITGVSPTMGLLLLLKAFAAVVLGGL------GSIPGAVVGGLLL 236
|
250 260
....*....|....*....|....*....
gi 489058846 280 VTTTALITMVNASPGLRSILFGSLILGLL 308
Cdd:cd06582 237 GLAESLAAAYLSSGYKDAVAFVLLILVLL 265
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
73-310 |
6.08e-05 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 43.58 E-value: 6.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 73 VGAVMTVTAILLPVISPdwdptgLLGVVMVLAIAAIIGAVNGIGAAWLRVPPIIMTLAMATFLQGLLVIVAggsavsvnn 152
Cdd:cd06580 34 AAALVALYLGLPATGSL------PLGLLAAALAGALWALLPALLKAKLGVNEVISGLMLNYIALGLTSYLL--------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 153 aaaiflgsarPFGIPASIILWVAVtavvlvllHKMPTGARFLALGANPVATRLSGVNVNRNMVALYALSAFFAGLAGIVL 232
Cdd:cd06580 99 ----------LLALLLVILVWLLL--------YRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489058846 233 -LGMNRQGYVGIGEPYVLLSIAAVVLGGTSILggrgtyaGTIPGAILLVTTTALITMVNASPGLRSILFGsLILGLLMI 310
Cdd:cd06580 161 vLGVQGRFTEGMSAGYGFIAIAVALLGRWNPL-------GILLAALLFGALEAGGIALQRSGGVPSELVQ-VLPGIIVL 231
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
91-279 |
8.72e-05 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 43.57 E-value: 8.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 91 WDPTGLLGVVMVLAIAAIIGAVNGIGAAWLR----VPPIIMTLAM---ATFLQGLLVIVAGGSAVSVNNAAAIFLGSAR- 162
Cdd:COG4603 108 PGLPGPLHLPLALLAGALAGALWAAIPGLLKarfgVNEVITTLMLnyiALYLVNYLVRGPLRDPGSGFPQTPPIPESARl 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489058846 163 -----PFGIPASIILWVAVTAVVLVLLHKMPTGARFLALGANPVATRLSGVNVNRNMVALYALSAFFAGLAGIV-LLGMN 236
Cdd:COG4603 188 prllpGTRLHLGLLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVeVLGVQ 267
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 489058846 237 RQGYVGIGEPYVLLSIAAVVLGGTSILggrgtyaGTIPGAILL 279
Cdd:COG4603 268 GRLTPGFSPGYGFTGIAVALLGRNNPL-------GIILAALLF 303
|
|
| |
