NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|489060952|ref|WP_002970999|]
View 

MULTISPECIES: hypothetical protein [Brucella]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
85-164 4.86e-06

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14951:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 618  Bit Score: 47.40  E-value: 4.86e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489060952  85 ADTKAPARDYAAAVGPVPRPAAPVAPTPQKPVQTAAVAAPKPPRPSGSVVASVTPAAPHAMPPRGVNTPANSPSVIYAKA 164
Cdd:PRK14951 376 AEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455
 
Name Accession Description Interval E-value
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 85-164 4.86e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.40  E-value: 4.86e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489060952  85 ADTKAPARDYAAAVGPVPRPAAPVAPTPQKPVQTAAVAAPKPPRPSGSVVASVTPAAPHAMPPRGVNTPANSPSVIYAKA 164
Cdd:PRK14951 376 AEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455
 
Name Accession Description Interval E-value
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 85-164 4.86e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.40  E-value: 4.86e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489060952  85 ADTKAPARDYAAAVGPVPRPAAPVAPTPQKPVQTAAVAAPKPPRPSGSVVASVTPAAPHAMPPRGVNTPANSPSVIYAKA 164
Cdd:PRK14951 376 AEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 79-154 3.15e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.71  E-value: 3.15e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489060952  79 PAPGKTADTKAPARDYAAAVGPVPRPAAPVAPTPQKPVQTAAVAAPKPPRPSGSVVASVTPAAPHAMPPRGVNTPA 154
Cdd:PRK14951 389 PAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPV 464
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 78-158 8.01e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.64  E-value: 8.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489060952   78 KPAPGKTADTKAPARDYAAAVGPVPRPAAPVAPTPQKPVQTAAVAAPKPPRPSgsvvASVTPAAPHAMPPRGVNTPANSP 157
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAA----AAAAAAPAAPPAAAAAAAPAAAA 112


                  .
gi 489060952  158 S 158
Cdd:PRK12270  113 V 113
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 78-157 8.37e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.64  E-value: 8.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489060952   78 KPAPGKTADTKAPARDYAAAVGPVPRPAAPVAPTPQKPVQTAAVAAPKPPRPSGSVVASVTPAAPHAMPPRGVNTPANSP 157
Cdd:PRK12270   40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 78-150 9.83e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.26  E-value: 9.83e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489060952   78 KPAPGKTADTKAPARDYAAAVGPvPRPAAPVAPTPQKPVQTAAVAAPKPPRPSGSVVASVTPAA--PHAMPPRGV 150
Cdd:PRK12270   50 AAAAAASAPAAAPAAKAPAAPAP-APPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAveDEVTPLRGA 123
PHA03247 PHA03247
large tegument protein UL36; Provisional
 52-158 1.56e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 1.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489060952   52 PQAALSALFQRPAPKPAPAATAKAENKPAPGKTADTKAPARDYAAAVGPVPRPAAPVaPTPQKPVQTAAVAAPKPPRPS- 130
Cdd:PHA03247 2772 PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL-PPPTSAQPTAPPPPPGPPPPSl 2850

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 489060952  131 ---GSVV-------------ASVTPAAPHAMPPRGVNTPANSPS 158
Cdd:PHA03247 2851 plgGSVApggdvrrrppsrsPAAKPAAPARPPVRRLARPAVSRS 2894
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 79-180 1.98e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 39.41  E-value: 1.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489060952  79 PAPGKTADTKAPARDYAAAVGPVPRPAAPVAPTPQKPVQTAAVAAPKPPRPSGSVVAS--------VTPAAPHAMPPRGV 150
Cdd:PRK14950 374 AAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLtraaipvdEKPKYTPPAPPKEE 453

                         90       100       110
                 ....*....|....*....|....*....|...
gi 489060952 151 NTPANSPSVIYAKAKLT---IHKNAWDRSPAIA 180
Cdd:PRK14950 454 EKALIADGDVLEQLEAIwkqILRDVPPRSPAVQ 486
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 81-159 2.91e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 38.72  E-value: 2.91e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489060952   81 PGKTADTKAPArdyAAAVGPVPRPAAPVAPTPQKPVQTAAVAAPKPPRPSGSVVASVTPAAPHAMPPRGVNTPANSPSV 159
Cdd:PRK12270   38 PGSTAAPTAAA---AAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
85-216 3.80e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 38.22  E-value: 3.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489060952  85 ADTKAPARDYAAAVGPV-------PRPAAPVAPTPQKpvQTAAVAAPKPPRPSGSVVASVTPAAPHAMP-PRGVNTPANS 156
Cdd:PRK14971 366 GDDASGGRGPKQHIKPVftqpaaaPQPSAAAAASPSP--SQSSAAAQPSAPQSATQPAGTPPTVSVDPPaAVPVNPPSTA 443

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489060952 157 PSVIYAKAKLTIHKNAWDRSPAIA-TIEKGREMRSYGKTGRWHRVVVPSTNIIgwVHEDQL 216
Cdd:PRK14971 444 PQAVRPAQFKEEKKIPVSKVSSLGpSTLRPIQEKAEQATGNIKEAPTGTQKEI--FTEEDL 502
PRK11855 PRK11855
dihydrolipoamide acetyltransferase; Reviewed
 95-146 4.34e-03

dihydrolipoamide acetyltransferase; Reviewed


Pssm-ID: 237000 [Multi-domain]  Cd Length: 547  Bit Score: 38.27  E-value: 4.34e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 489060952  95 AAAVGPVPRPAAPVAPTPQKPVQTAAVAAPKPPRPSGSVVASVTPAAPHAMP 146
Cdd:PRK11855 196 AAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASP 247
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 103-159 9.45e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 37.15  E-value: 9.45e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 489060952 103 RPAAPVAPTPQKPVQTAAVAAPKPPRPSGSVVAsvtPAAPHAMPPRGVNTPANSPSV 159
Cdd:PRK07994 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVA---PPQAPAVPPPPASAPQQAPAV 413
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH