|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
9-450 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 589.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 9 WNRVLELAQSQLKQATYEFFVHDARLLKVDKHIATIYL-DQMKELFWEKNLKDVILTAGFEVYNAQISVDYVFEED-LMI 86
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSIEGNTLIISVpNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTVGEDeEEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 87 EQNQTKINQKPKQQALNslPTVTSDLNSKYSFENFIQGDENRWAVAASIAVANTPGTTYNPLFIWGGPGLGKTHLLNAIG 166
Cdd:TIGR00362 81 EPNSKKPEPAPPEAPAP--PSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 167 NSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDIQSLAKKTlsGTQEEFFNTFNALHNNNKQI 246
Cdd:TIGR00362 159 NEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKE--RTQEEFFHTFNALHENNKQI 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 247 VLTSDRTPDHLNDLEDRLVTRFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDIS 326
Cdd:TIGR00362 237 VLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNRLL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 327 LVANFKQIDtITVDIAAEAIRARKQDGPKMtvIPIEEIQAQVGKFYGVTVKEIKATKRTQNIVLARQVAMFLAREMTDNS 406
Cdd:TIGR00362 317 AYASLTGKP-ITLELAKEALKDLLRAQKKE--ITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLS 393
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 489077715 407 LPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKI 450
Cdd:TIGR00362 394 LPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
4-451 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 562.83 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 4 NEQIFWNRVLELAQSQLKQATYEFFVHDARLLKVDKHIATIYL--DQMKElFWEKNLKDVILTAGFevynaqisvdyvfe 81
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKALSLEDNTLTLYVpnRFVKD-WIEKNYLDLIEEALQ-------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 82 edlmieqnqtkinqkpkqqalnslptvtsdLNSKYSFENFIQGDENRWAVAASIAVANTPGTTYNPLFIWGGPGLGKTHL 161
Cdd:PRK00149 66 ------------------------------LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHL 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 162 LNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDIQSLAKKTlsGTQEEFFNTFNALHN 241
Cdd:PRK00149 116 LHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKE--RTQEEFFHTFNALHE 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 242 NNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGA 321
Cdd:PRK00149 194 AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGA 273
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 322 LKDISLVANFKQIDtITVDIAAEAIRARKQDGPKmtVIPIEEIQAQVGKFYGVTVKEIKATKRTQNIVLARQVAMFLARE 401
Cdd:PRK00149 274 LNRLIAYASLTGKP-ITLELAKEALKDLLAAQKK--KITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKE 350
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 489077715 402 MTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKIK 451
Cdd:PRK00149 351 LTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLK 400
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
112-419 |
8.14e-160 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 453.49 E-value: 8.14e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 112 LNSKYSFENFIQGDENRWAVAASIAVANTPGTTYNPLFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFV 191
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 192 IHIRLDTMDELKEKFRNLDLLLIDDIQSLAKKTlsGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWG 271
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKE--ATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 272 LTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKQIDtITVDIAAEAIRARKQ 351
Cdd:COG0593 159 LVVDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRP-ITLELAREVLKDLLR 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489077715 352 DGPKMtvIPIEEIQAQVGKFYGVTVKEIKATKRTQNIVLARQVAMFLAREMTDNSLPKIGKEFGGRDH 419
Cdd:COG0593 238 AQKKE--ITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
112-332 |
8.12e-99 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 295.01 E-value: 8.12e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 112 LNSKYSFENFIQGDENRWAVAASIAVANTPGTTYNPLFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFV 191
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 192 IHIRLDTMDELKEKFRNLDLLLIDDIQSLAKKtlSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWG 271
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGK--EGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWG 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489077715 272 LTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFK 332
Cdd:pfam00308 159 LVTDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
361-450 |
3.56e-41 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 141.50 E-value: 3.56e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 361 IEEIQAQVGKFYGVTVKEIKATKRTQNIVLARQVAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLR 440
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 489077715 441 IEIETIKNKI 450
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
360-428 |
8.63e-34 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 121.08 E-value: 8.63e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489077715 360 PIEEIQAQVGKFYGVTVKEIKATKRTQNIVLARQVAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNK 428
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
146-217 |
3.40e-06 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 47.85 E-value: 3.40e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489077715 146 NPLFIwGGPGLGKTHLLNAIGNSVLLENpnARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDI 217
Cdd:NF038214 92 NVLLL-GPPGTGKTHLAIALGYAACRQG--YRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDEL 160
|
|
| ZapE |
NF040713 |
cell division protein ZapE; |
148-264 |
8.14e-04 |
|
cell division protein ZapE;
Pssm-ID: 468677 [Multi-domain] Cd Length: 344 Bit Score: 41.35 E-value: 8.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 148 LFIWGGPGLGKTHLLNAIGNSVLLEnPNARIKYitaenfiNEFV--IHIRL----DTMDEL----KEKFRNLDLLLIDdi 217
Cdd:NF040713 55 LYLWGGVGRGKTMLMDLFYEALPIE-RKRRVHF-------HEFMreVHQRLallrGQADPLppvaDEIASEARLLCFD-- 124
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 489077715 218 qslakktlsgtqeEFFNT-----------FNALHNNNKQIVLTSDRTPDHLndLEDRL 264
Cdd:NF040713 125 -------------EFHVDdiadamilgrlFEALFERGVVLVATSNTPPDDL--YKNGL 167
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
9-450 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 589.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 9 WNRVLELAQSQLKQATYEFFVHDARLLKVDKHIATIYL-DQMKELFWEKNLKDVILTAGFEVYNAQISVDYVFEED-LMI 86
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSIEGNTLIISVpNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTVGEDeEEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 87 EQNQTKINQKPKQQALNslPTVTSDLNSKYSFENFIQGDENRWAVAASIAVANTPGTTYNPLFIWGGPGLGKTHLLNAIG 166
Cdd:TIGR00362 81 EPNSKKPEPAPPEAPAP--PSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 167 NSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDIQSLAKKTlsGTQEEFFNTFNALHNNNKQI 246
Cdd:TIGR00362 159 NEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKE--RTQEEFFHTFNALHENNKQI 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 247 VLTSDRTPDHLNDLEDRLVTRFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDIS 326
Cdd:TIGR00362 237 VLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNRLL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 327 LVANFKQIDtITVDIAAEAIRARKQDGPKMtvIPIEEIQAQVGKFYGVTVKEIKATKRTQNIVLARQVAMFLAREMTDNS 406
Cdd:TIGR00362 317 AYASLTGKP-ITLELAKEALKDLLRAQKKE--ITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLS 393
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 489077715 407 LPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKI 450
Cdd:TIGR00362 394 LPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
4-451 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 562.83 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 4 NEQIFWNRVLELAQSQLKQATYEFFVHDARLLKVDKHIATIYL--DQMKElFWEKNLKDVILTAGFevynaqisvdyvfe 81
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKALSLEDNTLTLYVpnRFVKD-WIEKNYLDLIEEALQ-------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 82 edlmieqnqtkinqkpkqqalnslptvtsdLNSKYSFENFIQGDENRWAVAASIAVANTPGTTYNPLFIWGGPGLGKTHL 161
Cdd:PRK00149 66 ------------------------------LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHL 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 162 LNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDIQSLAKKTlsGTQEEFFNTFNALHN 241
Cdd:PRK00149 116 LHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKE--RTQEEFFHTFNALHE 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 242 NNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGA 321
Cdd:PRK00149 194 AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGA 273
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 322 LKDISLVANFKQIDtITVDIAAEAIRARKQDGPKmtVIPIEEIQAQVGKFYGVTVKEIKATKRTQNIVLARQVAMFLARE 401
Cdd:PRK00149 274 LNRLIAYASLTGKP-ITLELAKEALKDLLAAQKK--KITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKE 350
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 489077715 402 MTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKIK 451
Cdd:PRK00149 351 LTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLK 400
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
112-419 |
8.14e-160 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 453.49 E-value: 8.14e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 112 LNSKYSFENFIQGDENRWAVAASIAVANTPGTTYNPLFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFV 191
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 192 IHIRLDTMDELKEKFRNLDLLLIDDIQSLAKKTlsGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWG 271
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKE--ATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 272 LTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKQIDtITVDIAAEAIRARKQ 351
Cdd:COG0593 159 LVVDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRP-ITLELAREVLKDLLR 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489077715 352 DGPKMtvIPIEEIQAQVGKFYGVTVKEIKATKRTQNIVLARQVAMFLAREMTDNSLPKIGKEFGGRDH 419
Cdd:COG0593 238 AQKKE--ITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
97-451 |
6.15e-116 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 352.98 E-value: 6.15e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 97 PKQQALNSLP-TVTSDLNSKYSFENFIQGDENRWAVAASIAVANTPGTTYNPLFIWGGPGLGKTHLLNAIGNSVLLENPN 175
Cdd:PRK14086 265 AAQPAPAPGPgEPTARLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPG 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 176 ARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDIQSLAKKtlSGTQEEFFNTFNALHNNNKQIVLTSDRTPD 255
Cdd:PRK14086 345 TRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDK--ESTQEEFFHTFNTLHNANKQIVLSSDRPPK 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 256 HLNDLEDRLVTRFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALkdISLVAnFKQID 335
Cdd:PRK14086 423 QLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGAL--IRVTA-FASLN 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 336 TITVDIAAEAIRAR----KQDGPKMTVipiEEIQAQVGKFYGVTVKEIKATKRTQNIVLARQVAMFLAREMTDNSLPKIG 411
Cdd:PRK14086 500 RQPVDLGLTEIVLRdlipEDSAPEITA---AAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIG 576
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 489077715 412 KEFgGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKIK 451
Cdd:PRK14086 577 QQF-GRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIK 615
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
112-332 |
8.12e-99 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 295.01 E-value: 8.12e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 112 LNSKYSFENFIQGDENRWAVAASIAVANTPGTTYNPLFIWGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFV 191
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 192 IHIRLDTMDELKEKFRNLDLLLIDDIQSLAKKtlSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWG 271
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGK--EGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWG 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489077715 272 LTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFK 332
Cdd:pfam00308 159 LVTDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
111-436 |
2.76e-58 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 197.75 E-value: 2.76e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 111 DLNSKYSFENFIQGDENRWAVAASIAVANTP----GTTYNPLFIWGGPGLGKTHLLNAIGNSvlLENPNARIKYITAENF 186
Cdd:PRK12422 103 ELDPLMTFANFLVTPENDLPHRILQEFTKVSeqgkGFPFNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRSELF 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 187 INEFVIHIRLDTMDELKEKFRNLDLLLIDDIQSLAKKtlSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVT 266
Cdd:PRK12422 181 TEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGK--GATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 267 RFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKQ--IDTITVDIAAE 344
Cdd:PRK12422 259 RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKlsHQLLYVDDIKA 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 345 AIRARKQDGPKMTVIPIEEIQAqVGKFYGVTVKEIKATKRTQNIVLARQVAMFLAREMTDNSLPKIGKEFgGRDHSTVLH 424
Cdd:PRK12422 339 LLHDVLEAAESVRLTPSKIIRA-VAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVF-SRDHSTVIS 416
|
330
....*....|..
gi 489077715 425 AYNKIKNMISQD 436
Cdd:PRK12422 417 SIRAISQKLEED 428
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
361-450 |
3.56e-41 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 141.50 E-value: 3.56e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 361 IEEIQAQVGKFYGVTVKEIKATKRTQNIVLARQVAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLR 440
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 489077715 441 IEIETIKNKI 450
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
361-429 |
5.03e-36 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 127.13 E-value: 5.03e-36
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489077715 361 IEEIQAQVGKFYGVTVKEIKATKRTQNIVLARQVAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKI 429
Cdd:pfam08299 1 IEKIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
360-428 |
8.63e-34 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 121.08 E-value: 8.63e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489077715 360 PIEEIQAQVGKFYGVTVKEIKATKRTQNIVLARQVAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNK 428
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
117-322 |
7.66e-21 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 90.71 E-value: 7.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 117 SFENFIqGDENRWAVAA--SIAVANTPGTTYnplfIWGGPGLGKTHLLNAIGNSVLLENPNARikYITAeNFINEFVIHI 194
Cdd:TIGR03420 13 TFDNFY-AGGNAELLAAlrQLAAGKGDRFLY----LWGESGSGKSHLLQAACAAAEERGKSAI--YLPL-AELAQADPEV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 195 rLDTMDelkekfrNLDLLLIDDIQSLAKKtlSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTV 274
Cdd:TIGR03420 85 -LEGLE-------QADLVCLDDVEAIAGQ--PEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 489077715 275 NITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGAL 322
Cdd:TIGR03420 155 QLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALL 202
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
141-272 |
4.65e-17 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 77.96 E-value: 4.65e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 141 PGTTYNPLFIWGGPGLGKTHLLNAIGNsvLLENPNARIKYITAENFINEFVI-----HIRLDTMDELKEKfRNLDLLLID 215
Cdd:cd00009 15 ELPPPKNLLLYGPPGTGKTTLARAIAN--ELFRPGAPFLYLNASDLLEGLVVaelfgHFLVRLLFELAEK-AKPGVLFID 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 216 DIQSLAKKTLSGTQE--EFFNTFNALHNNNKQIVLTSDRTPDHL-NDLEDRLVTRFKWGL 272
Cdd:cd00009 92 EIDSLSRGAQNALLRvlETLNDLRIDRENVRVIGATNRPLLGDLdRALYDRLDIRIVIPL 151
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
97-307 |
4.25e-16 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 77.32 E-value: 4.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 97 PKQQALNSLPTVTSdlnskySFENFIQGdENRWAVAA--SIAVANTPGTTYnplFIWGGPGLGKTHLLNAIGNSVLLENP 174
Cdd:PRK08903 2 MRQLTLDLGPPPPP------TFDNFVAG-ENAELVARlrELAAGPVADRFF---YLWGEAGSGRSHLLQALVADASYGGR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 175 NARikYITAENFINEFVihirLDTMDelkekfrnlDLLLIDDIQSLAKktlsGTQEEFFNTFNALHNNNKQIVLTS-DRT 253
Cdd:PRK08903 72 NAR--YLDAASPLLAFD----FDPEA---------ELYAVDDVERLDD----AQQIALFNLFNRVRAHGQGALLVAgPAA 132
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 489077715 254 PDHLnDLEDRLVTRFKWGLTVNITPPDFETRVAILTNKIQEYNFIFPQDTIEYL 307
Cdd:PRK08903 133 PLAL-PLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYL 185
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
117-332 |
3.87e-10 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 59.69 E-value: 3.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 117 SFENFIQGdENRWAVAASIAVANTPGTTYnpLFIWGGPGLGKTHLLNAIgnSVLLENPNARIKYITaenfinefvIHIRL 196
Cdd:PRK08084 20 TFASFYPG-DNDSLLAALQNALRQEHSGY--IYLWSREGAGRSHLLHAA--CAELSQRGRAVGYVP---------LDKRA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 197 DTMDELKEKFRNLDLLLIDDIQSLAKKTLsgTQEEFFNTFN-ALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVN 275
Cdd:PRK08084 86 WFVPEVLEGMEQLSLVCIDNIECIAGDEL--WEMAIFDLYNrILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYK 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 276 ITPPDFETRVAILTNKIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDI---SLVANFK 332
Cdd:PRK08084 164 LQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLdraSITAQRK 223
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
152-259 |
6.35e-10 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 59.41 E-value: 6.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 152 GGPGLGKTHLLNAIGNSVLLENPNARikYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDIqslAKKTLSGTQ-E 230
Cdd:COG1484 106 GPPGTGKTHLAIALGHEACRAGYRVR--FTTAPDLVNELKEARADGRLERLLKRLAKVDLLILDEL---GYLPLDAEGaE 180
|
90 100
....*....|....*....|....*....
gi 489077715 231 EFFNTFNALHnNNKQIVLTSDRTPDHLND 259
Cdd:COG1484 181 LLFELISDRY-ERRSTIITSNLPFSEWGE 208
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
148-269 |
4.28e-09 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 57.60 E-value: 4.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 148 LFIWGGPGLGKTHLLNAIGNSvLLENPNARIkYITAENFINEFVIhIRLDTMDELKEKFRNL---DLLLIDDIQslAKKT 224
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCIAKE-LLDRGKSVI-YRTADELIEILRE-IRFNNDKELEEVYDLLincDLLIIDDLG--TEKI 260
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 489077715 225 LSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLED-----RLVTRFK 269
Cdd:PRK06835 261 TEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSerissRLLGNFT 310
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
146-267 |
3.24e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 52.38 E-value: 3.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 146 NPLFIWGGPGLGKTHLLNAIGNsvLLENPNARIKYITAENFINEFVIHIRLDTMDELK------EKFRNL---------D 210
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKasgsgeLRLRLAlalarklkpD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 211 LLLIDDIQSLAKKTLSG---TQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTR 267
Cdd:smart00382 81 VLILDEITSLLDAEQEAlllLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDR 140
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
142-267 |
3.70e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 51.32 E-value: 3.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 142 GTTYNPLFIWGGPGLGKTHLLNAIGNSVLlenpnaRIKYITAENFinEFVihirlDTMDELKEKFRNL----------DL 211
Cdd:PRK06921 114 ESRKNSIALLGQPGSGKTHLLTAAANELM------RKKGVPVLYF--PFV-----EGFGDLKDDFDLLeaklnrmkkvEV 180
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 489077715 212 LLIDDIQSLAKKTLSGTQ---EEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTR 267
Cdd:PRK06921 181 LFIDDLFKPVNGKPRATEwqiEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSR 239
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
148-267 |
2.88e-06 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 48.48 E-value: 2.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 148 LFIWGGPGLGKTHLLNAIGNSvLLENpNARIKYITAENFINEfvihIRLDTMDELKEK-------FRNLDLLLIDDIQsl 220
Cdd:PRK08116 117 LLLWGSVGTGKTYLAACIANE-LIEK-GVPVIFVNFPQLLNR----IKSTYKSSGKEDeneiirsLVNADLLILDDLG-- 188
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 489077715 221 AKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHL-NDLEDRLVTR 267
Cdd:PRK08116 189 AERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELkNQYGKRIYDR 236
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
146-217 |
3.40e-06 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 47.85 E-value: 3.40e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489077715 146 NPLFIwGGPGLGKTHLLNAIGNSVLLENpnARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDI 217
Cdd:NF038214 92 NVLLL-GPPGTGKTHLAIALGYAACRQG--YRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDEL 160
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
111-170 |
1.10e-05 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 46.75 E-value: 1.10e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489077715 111 DLNSKYSFENF-IQGDENRWAVAASIAVANTPGTTYNPLFIWGGPGLGKTHLLNAIGNSVL 170
Cdd:PRK12377 66 PLHRKCSFANYqVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLL 126
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
368-432 |
2.02e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 44.00 E-value: 2.02e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489077715 368 VGKFYGVTVKEIKATKRTQNIVL-ARQVAMFLAREMTDNSLPKIGKEFGgRDHSTVLHAYNKIKNM 432
Cdd:PRK06030 32 LALAFGVSGAEIASPLRGRREVSrIRQIAMYVAHVSLGWPMNEVALAFG-RDRTTVGHACHTVEDL 96
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
117-217 |
8.58e-05 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 43.99 E-value: 8.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 117 SFENF-IQGDENRWAVAASIAVANTPGTTYNPLFIWGGPGLGKTHLLNAIGNSVLLENPNARIkyITAENFINEF--VIH 193
Cdd:PRK07952 70 SFENYrVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLI--ITVADIMSAMkdTFS 147
|
90 100
....*....|....*....|....
gi 489077715 194 IRLDTMDELKEKFRNLDLLLIDDI 217
Cdd:PRK07952 148 NSETSEEQLLNDLSNVDLLVIDEI 171
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
148-357 |
2.24e-04 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 43.74 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 148 LFIWGGPGLGKTHLLNAIGNSVllenpNARIKYITAENFINEFVihirLDTMDELKEKFRNLD-----LLLIDDIQSLAK 222
Cdd:TIGR01243 215 VLLYGPPGTGKTLLAKAVANEA-----GAYFISINGPEIMSKYY----GESEERLREIFKEAEenapsIIFIDEIDAIAP 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 223 KTLSGTQE-------EFFNTFNALHNNNKQIVLTSDRTPDHLnDLEDRLVTRFKwgLTVNITPPDFETRVAILtnKIQEY 295
Cdd:TIGR01243 286 KREEVTGEvekrvvaQLLTLMDGLKGRGRVIVIGATNRPDAL-DPALRRPGRFD--REIVIRVPDKRARKEIL--KVHTR 360
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489077715 296 NFIFPQDT-IEYLAGQFDSNV-RDLEGALKDISLVANFKQIDTITVDIAAEAIRARKQDGPKMT 357
Cdd:TIGR01243 361 NMPLAEDVdLDKLAEVTHGFVgADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVT 424
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
148-268 |
2.84e-04 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 40.65 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 148 LFIWGGPGLGKTHLLNAIGNSVllenpNARIKYITAENFINEFVIH----IRlDTMDELKEKfrNLDLLLIDDIQSLAKK 223
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL-----GAPFIEISGSELVSKYVGEsekrLR-ELFEAAKKL--APCVIFIDEIDALAGS 72
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 489077715 224 TLSGTQEEFFNTFNAL--------HNNNKQIVLTSDRTPDhlnDLEDRLVTRF 268
Cdd:pfam00004 73 RGSGGDSESRRVVNQLlteldgftSSNSKVIVIAATNRPD---KLDPALLGRF 122
|
|
| ZapE |
NF040713 |
cell division protein ZapE; |
148-264 |
8.14e-04 |
|
cell division protein ZapE;
Pssm-ID: 468677 [Multi-domain] Cd Length: 344 Bit Score: 41.35 E-value: 8.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 148 LFIWGGPGLGKTHLLNAIGNSVLLEnPNARIKYitaenfiNEFV--IHIRL----DTMDEL----KEKFRNLDLLLIDdi 217
Cdd:NF040713 55 LYLWGGVGRGKTMLMDLFYEALPIE-RKRRVHF-------HEFMreVHQRLallrGQADPLppvaDEIASEARLLCFD-- 124
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 489077715 218 qslakktlsgtqeEFFNT-----------FNALHNNNKQIVLTSDRTPDHLndLEDRL 264
Cdd:NF040713 125 -------------EFHVDdiadamilgrlFEALFERGVVLVATSNTPPDDL--YKNGL 167
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
148-248 |
8.30e-04 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 39.25 E-value: 8.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489077715 148 LFIWGGPGLGKTHLLNAIGNsvLLENPNARIKYITAENF--INEFVIHIRLDTMDELKEKFRNLDL-------------- 211
Cdd:pfam13401 8 LVLTGESGTGKTTLLRRLLE--QLPEVRDSVVFVDLPSGtsPKDLLRALLRALGLPLSGRLSKEELlaalqqlllalava 85
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 489077715 212 --LLIDDIQSLakktlsgtQEEFFNTFNALHNNNK---QIVL 248
Cdd:pfam13401 86 vvLIIDEAQHL--------SLEALEELRDLLNLSSkllQLIL 119
|
|
| |
