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Conserved domains on  [gi|489079059|ref|WP_002988998|]
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MULTISPECIES: carbohydrate ABC transporter permease [Streptococcus]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 11417684)

carbohydrate ABC transporter permease, part of a periplasmic binding protein (PBP)-dependent ABC transporter may be involved in transport of one or more of a variety of mono-, di-, or polysaccharides, such as trehalose/maltose (MalG) and alginate (AlgM); responsible for translocation of the substrate across the membrane

Gene Ontology:  GO:0055085|GO:0008643
PubMed:  19234479|27273632
TCDB:  3.A.1.1.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 48-308 9.01e-68

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 212.65  E-value: 9.01e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  48 DESYLINHGYSFFPDVWSTKAYQYIFQGAmshRIMRSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTVYALI 127
Cdd:COG0395   42 PPAEIFSGPPSLLPSEFTLENYRAAFTDG---PFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILA 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059 128 TMLFAP--GMVANYLVVSNLlHLKDTVWALILPMALG--PFGILVMRTFFKkTVPDSIIESARMDGASEWMIFMKIVLPL 203
Cdd:COG0395  119 TLMIPGqvLLIPLYLLFRQL-GLLNTYWGLILPYLAFglPFGIFLLRQFFR-SIPRELEEAARIDGASEFRIFWRIVLPL 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059 204 AVPGIATISLFSALTYWNDWFNALLYVQSENLYPMQYLLMKIQSNLQalaqnagmsaqmadslaslPKESVRMAIVVIAT 283
Cdd:COG0395  197 SKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYG-------------------TDWGLLMAAAVIAT 257

                        250       260
                 ....*....|....*....|....*
gi 489079059 284 LPIALTYPFFQKYFVGGLTIGGVKE 308
Cdd:COG0395  258 LPVLILFLFLQRYFVRGLTAGAVKG 282
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 48-308 9.01e-68

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 212.65  E-value: 9.01e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  48 DESYLINHGYSFFPDVWSTKAYQYIFQGAmshRIMRSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTVYALI 127
Cdd:COG0395   42 PPAEIFSGPPSLLPSEFTLENYRAAFTDG---PFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILA 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059 128 TMLFAP--GMVANYLVVSNLlHLKDTVWALILPMALG--PFGILVMRTFFKkTVPDSIIESARMDGASEWMIFMKIVLPL 203
Cdd:COG0395  119 TLMIPGqvLLIPLYLLFRQL-GLLNTYWGLILPYLAFglPFGIFLLRQFFR-SIPRELEEAARIDGASEFRIFWRIVLPL 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059 204 AVPGIATISLFSALTYWNDWFNALLYVQSENLYPMQYLLMKIQSNLQalaqnagmsaqmadslaslPKESVRMAIVVIAT 283
Cdd:COG0395  197 SKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYG-------------------TDWGLLMAAAVIAT 257

                        250       260
                 ....*....|....*....|....*
gi 489079059 284 LPIALTYPFFQKYFVGGLTIGGVKE 308
Cdd:COG0395  258 LPVLILFLFLQRYFVRGLTAGAVKG 282
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
81-301 1.01e-08

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 55.13  E-value: 1.01e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  81 IMRSFGISVFITVvgTFINTTMTStyAYAISRPYFPYRRFFTVYALITMLFaPGMVANY---LVVSNLlHLKDTVWALIL 157
Cdd:PRK10973  77 LLNSFVMAFSITV--GKITVSMLS--AFAIVWFRFPLRNLFFWMIFITLML-PVEVRIFptvEVIANL-KMLDSYAGLTL 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059 158 PMALGPFGILVMRTFFKkTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIATISLFSALTYWNDWFNALLYVQSENLYp 237
Cdd:PRK10973 151 PLMASATATFLFRQFFM-TLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLG- 228

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489079059 238 mqyllmkiqsnlqalAQNAGMSAQMADSLASLPKESVrMAIVVIATLPIALTYPFFQKYFVGGL 301
Cdd:PRK10973 229 ---------------TAVAGIKGMIATGEGTTEWNQV-MAAMLLTLIPPVVIVLAMQRAFVRGL 276
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 85-258 2.56e-08

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 53.05  E-value: 2.56e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  85 FGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTVYALITM-------LFAPGMVANYLVVSNLLHLKDTVWALIL 157
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLslpslvlGLLLVLLFGVLLGWGILPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059 158 PMALGPFGILVMRTFFKkTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIATISLFSALTYWNDwFNALLYVQSENLYP 237
Cdd:cd06261   81 LLLIAPFARLIRRAALE-SIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE-FALVSFLGGGEAPG 158

                        170       180
                 ....*....|....*....|.
gi 489079059 238 MQYLLMKIQSNLQALAQNAGM 258
Cdd:cd06261  159 PGTGLLLIFAILFPGDLGVAA 179
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 109-222 2.25e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.21  E-value: 2.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  109 AISRPYFPYRRFFTVYALITMLFAPGMVANYLVVSNLLHLKDTVWALILPMALGPFG-ILVMRTFFKKTVPDSIIESARM 187
Cdd:pfam00528   9 ALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGyARLIRRAALRSLPSDLVEAARA 88

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 489079059  188 DGASEWMIFMKIVLPLAVPGIATISLFSALTYWND 222
Cdd:pfam00528  89 LGASRWQIFRKIILPNALPPILTGLALAFGGALGG 123
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 81-219 6.40e-05

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 44.29  E-value: 6.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059   81 IMRSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTVYALITmLFAPGMV---------ANYLVVSNLLHLKDT 151
Cdd:TIGR03262  52 LLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLP-LLAPSLLpaisliylfGNQGLLKGLLGGFSI 130

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489079059  152 --VWALILPMALG--PFGILVMRTFFkKTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIATiSLFSALTY 219
Cdd:TIGR03262 131 ygFWGIVIGEVFYtfPHALMILVTAL-SLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLIS-AAFVVFTL 200
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 48-308 9.01e-68

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 212.65  E-value: 9.01e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  48 DESYLINHGYSFFPDVWSTKAYQYIFQGAmshRIMRSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTVYALI 127
Cdd:COG0395   42 PPAEIFSGPPSLLPSEFTLENYRAAFTDG---PFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILA 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059 128 TMLFAP--GMVANYLVVSNLlHLKDTVWALILPMALG--PFGILVMRTFFKkTVPDSIIESARMDGASEWMIFMKIVLPL 203
Cdd:COG0395  119 TLMIPGqvLLIPLYLLFRQL-GLLNTYWGLILPYLAFglPFGIFLLRQFFR-SIPRELEEAARIDGASEFRIFWRIVLPL 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059 204 AVPGIATISLFSALTYWNDWFNALLYVQSENLYPMQYLLMKIQSNLQalaqnagmsaqmadslaslPKESVRMAIVVIAT 283
Cdd:COG0395  197 SKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYG-------------------TDWGLLMAAAVIAT 257

                        250       260
                 ....*....|....*....|....*
gi 489079059 284 LPIALTYPFFQKYFVGGLTIGGVKE 308
Cdd:COG0395  258 LPVLILFLFLQRYFVRGLTAGAVKG 282
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 58-308 3.18e-37

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 133.74  E-value: 3.18e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  58 SFFPDVWSTKAYQYIFQgamSHRIMRSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTVYALITMLFaPG--- 134
Cdd:COG3833   51 SLIPENFTLENYKKLFT---ETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMF-PAfla 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059 135 MVANYLVVSNLlHLKDTVWALILPMALG--PFGILVMRTFFKkTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIATIS 212
Cdd:COG3833  127 LVALYLLLSAL-GLLNTLLGLILVYLGGaiPFNTWLMKGYFD-TIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVA 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059 213 LFSALTYWNDWFNALLYVQSENLYPMQYLLMKIQSNLQalAQNAGMSAqmadslaslpkesvrmAIVVIATLPIALTYPF 292
Cdd:COG3833  205 LLSFIGPWNDFILASVLLRSPENYTLAVGLYSFVSDQR--NTNWGVFA----------------AGAVLVAIPIVILFLF 266

                        250
                 ....*....|....*.
gi 489079059 293 FQKYFVGGLTIGGVKE 308
Cdd:COG3833  267 LQRYLVSGLTAGGVKG 282
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 58-222 2.55e-18

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 82.47  E-value: 2.55e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  58 SFFPDVWSTKAYQYIFQgamSHRIMRSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTVYALITMLFaPGMV- 136
Cdd:COG1177   39 TFPPEGFTLRWYAELFS---DPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVV-PGIVl 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059 137 -ANYLVVSNLLHLKDTVWALILPMALG--PFGILVMRTFFKkTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIATISL 213
Cdd:COG1177  115 gVALLLLFSALGLSGGLWGLILAHVVFtlPFVVLVVLARLQ-GFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGAL 193


                 ....*....
gi 489079059 214 FSALTYWND 222
Cdd:COG1177  194 LAFTLSFDE 202
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
58-218 8.80e-10

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 59.40  E-value: 8.80e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  58 SFFPDVWSTKAYQYIFqgaMSHRIMRSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFftVYALITMLFA-PGMV 136
Cdd:COG1178  316 KALDDNLTLDNYRFVL---LDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARL--LDRLAMLPYAvPGIV 390

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059 137 --ANYLVVSN---LLHLKDTVWALILPMALG--PFGILVMRTFFKKtVPDSIIESARMDGASEWMIFMKIVLPLAVPGIA 209
Cdd:COG1178  391 lgLGLLLLFNrplPLLLYGTLAILVLAYVVRflPFALRSLEAALAQ-IDPSLEEAARSLGASPLRTLRRVTLPLLRPGLL 469


                 ....*....
gi 489079059 210 TISLFSALT 218
Cdd:COG1178  470 AAALLVFVT 478
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 56-214 2.46e-09

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 57.08  E-value: 2.46e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  56 GYSFFPDVWSTKAYQYIFQGAMSHRIM-RSFGISVFITVVGTFINTTMtstyAYAISRPYFPYRRFFT------------ 122
Cdd:COG1176   43 PYGGVVPGFTLENYARLFTDPLYLKVLlRTLWIALLTTLICLLLGYPI----AYFLARAPPRWRNLLLllvilpfwtsfl 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059 123 --VYALITMLFAPGMVANYL----VVSNLLHLKDTVWALILPM--ALGPFGILVMRTFFKKtVPDSIIESARMDGASEWM 194
Cdd:COG1176  119 vrTYAWIVLLGRNGLLNSLLlalgLIDEPLRLLYTEFAVVIGLvyVYLPFMVLPLYAALEK-IDPSLLEAARDLGASPWQ 197

                        170       180
                 ....*....|....*....|
gi 489079059 195 IFMKIVLPLAVPGIATISLF 214
Cdd:COG1176  198 TFRRVILPLSLPGIIAGSLL 217
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
81-301 1.01e-08

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 55.13  E-value: 1.01e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  81 IMRSFGISVFITVvgTFINTTMTStyAYAISRPYFPYRRFFTVYALITMLFaPGMVANY---LVVSNLlHLKDTVWALIL 157
Cdd:PRK10973  77 LLNSFVMAFSITV--GKITVSMLS--AFAIVWFRFPLRNLFFWMIFITLML-PVEVRIFptvEVIANL-KMLDSYAGLTL 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059 158 PMALGPFGILVMRTFFKkTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIATISLFSALTYWNDWFNALLYVQSENLYp 237
Cdd:PRK10973 151 PLMASATATFLFRQFFM-TLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSLG- 228

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489079059 238 mqyllmkiqsnlqalAQNAGMSAQMADSLASLPKESVrMAIVVIATLPIALTYPFFQKYFVGGL 301
Cdd:PRK10973 229 ---------------TAVAGIKGMIATGEGTTEWNQV-MAAMLLTLIPPVVIVLAMQRAFVRGL 276
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 85-258 2.56e-08

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 53.05  E-value: 2.56e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  85 FGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTVYALITM-------LFAPGMVANYLVVSNLLHLKDTVWALIL 157
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLslpslvlGLLLVLLFGVLLGWGILPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059 158 PMALGPFGILVMRTFFKkTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIATISLFSALTYWNDwFNALLYVQSENLYP 237
Cdd:cd06261   81 LLLIAPFARLIRRAALE-SIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE-FALVSFLGGGEAPG 158

                        170       180
                 ....*....|....*....|.
gi 489079059 238 MQYLLMKIQSNLQALAQNAGM 258
Cdd:cd06261  159 PGTGLLLIFAILFPGDLGVAA 179
malG PRK10998
maltose ABC transporter permease MalG;
88-307 2.23e-07

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 51.25  E-value: 2.23e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  88 SVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTVYALITMLFAP--GMVANYLVVSNL------LHLkDTVWALILPM 159
Cdd:PRK10998  88 SVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAvlSLVALYALFDRLgqyipfIGL-NTHGGVIFAY 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059 160 ALG-PFGILVMRTFFKkTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIATISLFSALTYWNDWFNALLYVQSENLYPm 238
Cdd:PRK10998 167 LGGiALHVWTIKGYFE-TIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYT- 244

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489079059 239 qyLLMKIQSNLQALAQNAGMSAqmadslaslpkesvrmAIVVIATLPIALTYPFFQKYFVGGLTIGGVK 307
Cdd:PRK10998 245 --LAVGMQQYLNPQNYLWGDFA----------------AAAVLSAIPITVVFLLAQRWLVGGLTAGGVK 295
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 72-210 2.65e-07

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 50.90  E-value: 2.65e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  72 IFQGAMSHRIMRSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFftVYALI---------------TMLFAPGMV 136
Cdd:COG0555   43 FWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRL--VDALVdlpfalptavagialLLLFGPNGW 120

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489079059 137 ANYLVVSNLLHLKDTVWALILPM---ALgPFGILVMRTFFKkTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIAT 210
Cdd:COG0555  121 LGQLLAPLGIKVAFTPLGIVLAQtfvSL-PFVVRTVQPVLE-ELDPELEEAAATLGASRWQTFRRVILPLLLPALLT 195
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 86-210 5.95e-07

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 49.28  E-value: 5.95e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  86 GISVFIT-VVGTFInttmtstyAYAISRPYFPYRRFftVYALITM---------------LFAP-GMVANYLVVSNLLHL 148
Cdd:COG4149   17 LIATLLLlLLGIPL--------AWWLARTRFRGKGL--LEALVTLplvlpptvlgfylllLFGRnGPLGQLLEELFGISL 86

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489079059 149 KDTVWALILP---MALgPFGILVMRTFFKkTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIAT 210
Cdd:COG4149   87 VFTWTGAVLAsvvVSL-PLMVQPLRAAFE-AVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILA 149
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
80-217 1.13e-06

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 49.77  E-value: 1.13e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  80 RIMRSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTV--------------YALITMLFAPGMVANYLVVSNL 145
Cdd:COG1178   51 YLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWllllplalppyvvaLAWIALFGPNGLLNTLLRALFG 130

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489079059 146 LHLKD--TVWALILPMALG--PFGILVMRTFFKkTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIATISLFSAL 217
Cdd:COG1178  131 LEPPDiyGLGGIILVLVLFnyPYVYLLLRAALR-SIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFL 205
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
69-217 4.19e-06

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 47.44  E-value: 4.19e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  69 YQYIFQgamSHRIMRSFGISVFITVVGTFINTTMTSTYAYAISRPyFPYRRFFTVYALITMLFAP---GMVANYL----- 140
Cdd:COG1175   65 YARLFT---DPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRK-LRGRGFFRTLFFLPWVISPvvvALIWKWLfnpdy 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059 141 -VVSNLLH---------LKDTVWALILPMALG-----PFGILVMRTFFKkTVPDSIIESARMDGASEWMIFMKIVLPLAV 205
Cdd:COG1175  141 gLLNALLGalglepinwLGDPSLALPAVIIVTvwkgtGFNMLIFLAGLQ-SIPRELYEAARIDGASPWQRFRRITLPLLR 219

                        170
                 ....*....|..
gi 489079059 206 PGIATISLFSAL 217
Cdd:COG1175  220 PTILFVLVLSTI 231
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 109-222 2.25e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.21  E-value: 2.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  109 AISRPYFPYRRFFTVYALITMLFAPGMVANYLVVSNLLHLKDTVWALILPMALGPFG-ILVMRTFFKKTVPDSIIESARM 187
Cdd:pfam00528   9 ALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGyARLIRRAALRSLPSDLVEAARA 88

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 489079059  188 DGASEWMIFMKIVLPLAVPGIATISLFSALTYWND 222
Cdd:pfam00528  89 LGASRWQIFRKIILPNALPPILTGLALAFGGALGG 123
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 81-219 6.40e-05

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 44.29  E-value: 6.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059   81 IMRSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTVYALITmLFAPGMV---------ANYLVVSNLLHLKDT 151
Cdd:TIGR03262  52 LLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLP-LLAPSLLpaisliylfGNQGLLKGLLGGFSI 130

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489079059  152 --VWALILPMALG--PFGILVMRTFFkKTVPDSIIESARMDGASEWMIFMKIVLPLAVPGIATiSLFSALTY 219
Cdd:TIGR03262 131 ygFWGIVIGEVFYtfPHALMILVTAL-SLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLIS-AAFVVFTL 200
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 87-210 9.16e-04

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 39.92  E-value: 9.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059   87 ISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTVYALITMLFAPGMVANYLVVS-----------NLLHLKD--TVW 153
Cdd:TIGR02141   2 LSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAfgpngpigkllELFGISLvfTFT 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 489079059  154 ALILPMAL--GPFGILVMRTFFKKTVPDsIIESARMDGASEWMIFMKIVLPLAVPGIAT 210
Cdd:TIGR02141  82 GAVLASVIvsFPLMVQPIRAAFEAVDPD-LEEAARTLGASESQTFLKVTLPLAFPGLLA 139
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 81-213 2.77e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 38.43  E-value: 2.77e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489079059  81 IMRSFGISVFITVVGTFINTTMTSTYAYAISRPYFPYRRFFTVYALITMLfAPGMV--ANYLVVSNLLHLKDTVWALILP 158
Cdd:PRK09500  55 LLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMM-SPDIVmaISLLVLFMLLGIQLGFWSLLFA 133

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489079059 159 ---MALgPFGILVMRTFFKKtVPDSIIESARMDGASEWMIFMKIVLPLAVPGIA-------TISL 213
Cdd:PRK09500 134 hitFCL-PFVVVTVYSRLKG-FDVRMLEAAKDLGASEFTILRKIILPLALPAVAagwllsfTLSL 196
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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