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Conserved domains on  [gi|489108599|ref|WP_003018457|]
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MULTISPECIES: ribosome maturation factor RimP [Streptococcus]

Protein Classification

ribosome maturation factor RimP( domain architecture ID 10011230)

ribosome maturation factor rimp is important for maturation of 30S ribosome subunits

Gene Symbol:  rimP
Gene Ontology:  GO:0000028|GO:0042274|GO:0006412
PubMed:  19150615

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK00092 PRK00092
ribosome maturation protein RimP; Reviewed
 3-159 5.20e-56

ribosome maturation protein RimP; Reviewed


:

Pssm-ID: 234627 [Multi-domain]  Cd Length: 154  Bit Score: 172.68  E-value: 5.20e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599   3 TIATIVDLVTEVIQPAIKE-PFELVDVEYGKMGGDYVLSIFVDKPEGITLNDTADLTEIISPLLDQikPDPFPEQYLLEV 81
Cdd:PRK00092   1 MMSPLEEQLTELIEPVVEAlGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDV--EDPIPGAYTLEV 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489108599  82 TSPGLERPLKTKEALEGAVGKYVNISLYKAVEKQKVFEGNLVGFEEDVLTIEYMDKtrKKTVDIPYNLVSKARLAVKL 159
Cdd:PRK00092  79 SSPGLDRPLKKARDFRRFIGREVKVKLYEPIDGRKKFQGILLAVDGETVTLEVEGK--EKEVEIPLDNIAKARLVVEF 154
 
Name Accession Description Interval E-value
PRK00092 PRK00092
ribosome maturation protein RimP; Reviewed
 3-159 5.20e-56

ribosome maturation protein RimP; Reviewed


Pssm-ID: 234627 [Multi-domain]  Cd Length: 154  Bit Score: 172.68  E-value: 5.20e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599   3 TIATIVDLVTEVIQPAIKE-PFELVDVEYGKMGGDYVLSIFVDKPEGITLNDTADLTEIISPLLDQikPDPFPEQYLLEV 81
Cdd:PRK00092   1 MMSPLEEQLTELIEPVVEAlGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDV--EDPIPGAYTLEV 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489108599  82 TSPGLERPLKTKEALEGAVGKYVNISLYKAVEKQKVFEGNLVGFEEDVLTIEYMDKtrKKTVDIPYNLVSKARLAVKL 159
Cdd:PRK00092  79 SSPGLDRPLKKARDFRRFIGREVKVKLYEPIDGRKKFQGILLAVDGETVTLEVEGK--EKEVEIPLDNIAKARLVVEF 154
RimP COG0779
Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];
5-159 2.61e-49

Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440542 [Multi-domain]  Cd Length: 151  Bit Score: 155.66  E-value: 2.61e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599   5 ATIVDLVTEVIQPAIKEP-FELVDVEYGKMGGDYVLSIFVDKPEGITLNDTADLTEIISPLLDQIkpDPFPEQYLLEVTS 83
Cdd:COG0779    2 SGLEERLEELLEPVLEELgLELVDVEVVKEGKRWVLRVYIDKDGGVTLDDCAAVSRALSAVLDVE--DPIPGAYTLEVSS 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489108599  84 PGLERPLKTKEALEGAVGKYVNISLYKAVEKQKVFEGNLVGFEEDVLTIEYmdktRKKTVDIPYNLVSKARLAVKL 159
Cdd:COG0779   80 PGLDRPLKKPRDFERFIGRLVKVKLREPIDGRKKFTGRLLGVDDDGVTLEV----DGKEVEIPLDDIAKARLVIEF 151
YlxS_C cd01734
Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown ...
 85-159 4.83e-21

Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.


Pssm-ID: 212481  Cd Length: 72  Bit Score: 80.95  E-value: 4.83e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489108599  85 GLERPLKTKEALEGAVGKYVNISLYKAVEKQKVFEGNLVGFEEDVLTIEYMDktrKKTVDIPYNLVSKARLAVKL 159
Cdd:cd01734    1 GLDRPLKKPEDFERFIGKEVKVKLKEPIDGRKKFTGELLGVDDDTVTLEVDD---GKEVEIPFDNIAKARLVPEF 72
RimP_N pfam02576
RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation ...
 15-87 1.90e-20

RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation factor RimP (also known as yhbC). RimP facilitates the maturation of the 30S ribosomal subunit. The N-terminal domain contains two alpha-helices and a three-stranded beta-sheet. It is suggested that the N-terminal domain of SP14.3 (RimP orthologue) could function as a protein module that binds to other proteins, especially those that contain highly positively charged surfaces..


Pssm-ID: 460600  Cd Length: 73  Bit Score: 79.57  E-value: 1.90e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489108599   15 IQPAIKE-PFELVDVEYGKMGGDYVLSIFVDKPEGITLNDTADLTEIISPLLDQikPDPFPEQYLLEVTSPGLE 87
Cdd:pfam02576   2 IEPVVESlGFELVDVEFVKEGGGWTLRIYIDKDGGVTIDDCAKVSRAISAVLDV--EDPISGEYTLEVSSPGLD 73
 
Name Accession Description Interval E-value
PRK00092 PRK00092
ribosome maturation protein RimP; Reviewed
 3-159 5.20e-56

ribosome maturation protein RimP; Reviewed


Pssm-ID: 234627 [Multi-domain]  Cd Length: 154  Bit Score: 172.68  E-value: 5.20e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599   3 TIATIVDLVTEVIQPAIKE-PFELVDVEYGKMGGDYVLSIFVDKPEGITLNDTADLTEIISPLLDQikPDPFPEQYLLEV 81
Cdd:PRK00092   1 MMSPLEEQLTELIEPVVEAlGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDV--EDPIPGAYTLEV 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489108599  82 TSPGLERPLKTKEALEGAVGKYVNISLYKAVEKQKVFEGNLVGFEEDVLTIEYMDKtrKKTVDIPYNLVSKARLAVKL 159
Cdd:PRK00092  79 SSPGLDRPLKKARDFRRFIGREVKVKLYEPIDGRKKFQGILLAVDGETVTLEVEGK--EKEVEIPLDNIAKARLVVEF 154
RimP COG0779
Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];
5-159 2.61e-49

Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440542 [Multi-domain]  Cd Length: 151  Bit Score: 155.66  E-value: 2.61e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599   5 ATIVDLVTEVIQPAIKEP-FELVDVEYGKMGGDYVLSIFVDKPEGITLNDTADLTEIISPLLDQIkpDPFPEQYLLEVTS 83
Cdd:COG0779    2 SGLEERLEELLEPVLEELgLELVDVEVVKEGKRWVLRVYIDKDGGVTLDDCAAVSRALSAVLDVE--DPIPGAYTLEVSS 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489108599  84 PGLERPLKTKEALEGAVGKYVNISLYKAVEKQKVFEGNLVGFEEDVLTIEYmdktRKKTVDIPYNLVSKARLAVKL 159
Cdd:COG0779   80 PGLDRPLKKPRDFERFIGRLVKVKLREPIDGRKKFTGRLLGVDDDGVTLEV----DGKEVEIPLDDIAKARLVIEF 151
PRK14647 PRK14647
ribosome maturation factor RimP;
7-155 3.64e-28

ribosome maturation factor RimP;


Pssm-ID: 173110 [Multi-domain]  Cd Length: 159  Bit Score: 102.13  E-value: 3.64e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599   7 IVDLVTEVIQPAIKE-PFELVDVEYGKMGGDYVLSIFVDKPEGITLNDTADLTEIISPLLDQikPDPFPEQYLLEVTSPG 85
Cdd:PRK14647   6 VVDRVTELAEQVLSSlGLELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDV--EDFIPERYTLEVSSPG 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489108599  86 LERPLKTKEALEGAVGKYVNISLYKAVE-----KQKVFEGNLVGFEEDVLTIeymDKTRKKTVDIPYNLVSKARL 155
Cdd:PRK14647  84 LDRPLKKEADYERYAGRLVKVRTFELLAdeagnKRKTFLGELEGLADGVVTI---ALKEGQQARIPLDKIAKANL 155
YlxS_C cd01734
Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown ...
 85-159 4.83e-21

Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.


Pssm-ID: 212481  Cd Length: 72  Bit Score: 80.95  E-value: 4.83e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489108599  85 GLERPLKTKEALEGAVGKYVNISLYKAVEKQKVFEGNLVGFEEDVLTIEYMDktrKKTVDIPYNLVSKARLAVKL 159
Cdd:cd01734    1 GLDRPLKKPEDFERFIGKEVKVKLKEPIDGRKKFTGELLGVDDDTVTLEVDD---GKEVEIPFDNIAKARLVPEF 72
RimP_N pfam02576
RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation ...
 15-87 1.90e-20

RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation factor RimP (also known as yhbC). RimP facilitates the maturation of the 30S ribosomal subunit. The N-terminal domain contains two alpha-helices and a three-stranded beta-sheet. It is suggested that the N-terminal domain of SP14.3 (RimP orthologue) could function as a protein module that binds to other proteins, especially those that contain highly positively charged surfaces..


Pssm-ID: 460600  Cd Length: 73  Bit Score: 79.57  E-value: 1.90e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489108599   15 IQPAIKE-PFELVDVEYGKMGGDYVLSIFVDKPEGITLNDTADLTEIISPLLDQikPDPFPEQYLLEVTSPGLE 87
Cdd:pfam02576   2 IEPVVESlGFELVDVEFVKEGGGWTLRIYIDKDGGVTIDDCAKVSRAISAVLDV--EDPISGEYTLEVSSPGLD 73
PRK14640 PRK14640
hypothetical protein; Provisional
 4-132 6.95e-20

hypothetical protein; Provisional


Pssm-ID: 173103 [Multi-domain]  Cd Length: 152  Bit Score: 80.44  E-value: 6.95e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599   4 IATIVDLVTEVIQ-PAIKEPFELVDVEYGKMGGDYVLSIFVDKPEGITLNDTADLTEIISPLLDQikPDPFPEQYLLEVT 82
Cdd:PRK14640   1 MATLEQRLTDLLEaPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDV--EDPITEEYYLEVS 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 489108599  83 SPGLERPLKTKEALEGAVGKYVNISLYKAVEKQKVFEGNLVGFEEDVLTI 132
Cdd:PRK14640  79 SPGLDRPLFKVAQFEKYVGQEAAVTLRMATNNRRKFKGVIKAVQGDMITL 128
PRK14636 PRK14636
ribosome maturation protein RimP;
1-155 9.50e-19

ribosome maturation protein RimP;


Pssm-ID: 237773 [Multi-domain]  Cd Length: 176  Bit Score: 78.29  E-value: 9.50e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599   1 MATIATIvdlvTEVIQPAIKE-PFELVDVEYGKMGGDYVLSIFVDKPEG--ITLNDTADLTEIISPLLDQIkpDPFPEQY 77
Cdd:PRK14636   1 MADIAAL----TALIEPEAKAlGLDLVRVAMFGGKSDPTLQIMAERPDTrqLVIEDCAALSRRLSDVFDEL--DPIEDAY 74

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489108599  78 LLEVTSPGLERPLKTKEALEGAVGKYVNISLYKAVEKQKVFEGNLVGFEEDVLTIeymDKTRKKTVDIPYNLVSKARL 155
Cdd:PRK14636  75 RLEVSSPGIDRPLTRPKDFADWAGHEARIALSEPLDGRKQFRGELKGIDGDTVTI---ADNKAGEVILPFAAIESAKL 149
PRK14631 PRK14631
ribosome maturation factor RimP;
11-155 2.72e-18

ribosome maturation factor RimP;


Pssm-ID: 237772 [Multi-domain]  Cd Length: 174  Bit Score: 76.85  E-value: 2.72e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599  11 VTEVIQPAIKE-PFELVDVEYGKMGGDYVLSIFVDKP------------------EGITLNDTADLTEIISPLLDQikPD 71
Cdd:PRK14631  10 LTDIIAPAVAAcGVDLWGIEFLPQGKRSLLRIYIDRLveenaepvinedgeveqgRGIGVEDCVRVTQQVGAMLDV--HD 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599  72 PFPEQYLLEVTSPGLERPLKTKEALEGAVGKYVNISLYKAVEKQKVFEGNL--VGFEEDVLTIEYMDKTRkktVDIPYNL 149
Cdd:PRK14631  88 PISGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLIAAVENRRKFQAKLlaVDLENEEIQVEVEGKHV---LDIDSNN 164


                 ....*.
gi 489108599 150 VSKARL 155
Cdd:PRK14631 165 IDKANL 170
PRK14639 PRK14639
ribosome maturation factor RimP;
24-154 2.19e-15

ribosome maturation factor RimP;


Pssm-ID: 173102 [Multi-domain]  Cd Length: 140  Bit Score: 68.69  E-value: 2.19e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599  24 ELVDVEYGKMGGDYVLSIFVDKPEGITLNDTADLTEIISPLLDqIKPdPFPEQYLLEVTSPGLERPLKTKEALEGAVGKY 103
Cdd:PRK14639  13 SFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFD-VEP-PVSGEYFLEVSSPGLERKLSKIEHFAKSIGEL 90

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 489108599 104 VNISLykaVEKQKvFEGNLVGFEEDVLTIEYMDKTRKKTVDIpyNLVSKAR 154
Cdd:PRK14639  91 VKITT---NEKEK-FEGKIVSVDDENITLENLENKEKTTINF--NDIKKAK 135
PRK14643 PRK14643
ribosome maturation factor RimP;
59-159 4.08e-12

ribosome maturation factor RimP;


Pssm-ID: 173106 [Multi-domain]  Cd Length: 164  Bit Score: 60.67  E-value: 4.08e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599  59 EIISPLLDQIKPdpFPEQYLLEVTSPGLERPLKTKEALEGAVGKYVNISLYKAVEKQKVFEGNLVGF--EEDVLTIEYMD 136
Cdd:PRK14643  64 DLVSNKIDQFIK--TSEKYLLEISSSGIEKQIRSQEELVKALNQWVYVQLNNEIKKVKEFEGYVTKYnvNTNTFRFTFFI 141

                         90       100
                 ....*....|....*....|...
gi 489108599 137 KTRKKTVDIPYNLVSKARLAVKL 159
Cdd:PRK14643 142 KGQKKKLDVKYEQIKFIRYAVRF 164
PRK14645 PRK14645
ribosome maturation factor RimP;
9-149 7.39e-11

ribosome maturation factor RimP;


Pssm-ID: 184780 [Multi-domain]  Cd Length: 154  Bit Score: 57.09  E-value: 7.39e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599   9 DLVTEVIQPAikePFELVDVEYGKMGGDYVLSIFVD-KPEG-ITLNDTADLTEIISPLLDQIkpDPFPEQYLLEVTSPGL 86
Cdd:PRK14645  13 QLAEGALEPL---GYEVLEVQVQRSGGKRIVLVRIDrKDEQpVTVEDLERASRALEAELDRL--DPIEGEYRLEVESPGP 87

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489108599  87 ERPLKTKEALEGAVGKYVnislyKAVEKQKVFEGNLVGFEEDVLTIEYMDKTRKKTV-DIPYNL 149
Cdd:PRK14645  88 KRPLFTARHFERFAGLKA-----KVRGPGENFTGRIKAVSGDQVTFDVGGEDRTLRIgTFQANL 146
PRK14638 PRK14638
ribosome maturation factor RimP;
13-159 9.78e-11

ribosome maturation factor RimP;


Pssm-ID: 184777 [Multi-domain]  Cd Length: 150  Bit Score: 56.41  E-value: 9.78e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599  13 EVIQPAIKEPFELVDVEYGKMGGDYVLSIFVDKPEG-ITLNDTADLTEIISPLLDqiKPDPFPEQYLLEVTSPGLERPLK 91
Cdd:PRK14638  13 EAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGyVSVRDCELFSREIERFLD--REDLIEHSYTLEVSSPGLDRPLR 90

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489108599  92 TKEALEGAVGKYVNISLykavEKQKVFEGNLVGFEEDVLTIEymdkTRKKTVDIPYNLVSKARLAVKL 159
Cdd:PRK14638  91 GPKDYVRFTGKLAKIVT----KDGKTFIGRIESFVDGTITIS----DEKEKYEINIDDVKRANLEVEF 150
PRK14632 PRK14632
ribosome maturation factor RimP;
34-131 1.05e-09

ribosome maturation factor RimP;


Pssm-ID: 173095 [Multi-domain]  Cd Length: 172  Bit Score: 54.30  E-value: 1.05e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599  34 GGDYVLSIFVDKPEGITLNDTADLTEIISPLLDQikPDPFPEQYLLEVTSPGLERPLKTKEALEGAVGKYVNISL---YK 110
Cdd:PRK14632  33 GGRTVVRLFVDGPEGVTIDQCAEVSRHVGLALEV--EDVISSAYVLEVSSPGLERPFFRAEQMSPYVGRQIELTLidpTP 110

                         90       100
                 ....*....|....*....|.
gi 489108599 111 AVEKQKVFEGNLVGFEEDVLT 131
Cdd:PRK14632 111 EWPGRRKFRGELLAVEGDTVV 131
DUF150_C pfam17384
RimP C-terminal SH3 domain; This family represents the C-terminal domain from RimP.
 90-159 5.43e-09

RimP C-terminal SH3 domain; This family represents the C-terminal domain from RimP.


Pssm-ID: 465408  Cd Length: 67  Bit Score: 49.93  E-value: 5.43e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599   90 LKTKEALEGAVGKYVNISLYKAVEKQKVFEGNLVGFEEDVLTIEYMDKTRkktVDIPYNLVSKARLAVKL 159
Cdd:pfam17384   1 LFTAEHFARFIGELVKVKLKLPIDGRKKFQGKIVAVDGETITLEVDGKTE---VTIPFDDIDKARLVPEF 67
PRK14644 PRK14644
hypothetical protein; Provisional
 18-145 7.36e-07

hypothetical protein; Provisional


Pssm-ID: 184779 [Multi-domain]  Cd Length: 136  Bit Score: 45.98  E-value: 7.36e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599  18 AIKEPFE--LVDVEYGKMGGDYVLSIFVDKPEgitLNDTADLTEIISPLLDQIKPDPfpEQYLLEVTSPGLERPLKTKEa 95
Cdd:PRK14644   6 KLLEKFGnkINEIKIVKEDGDLFLEVILNSRD---LKDIEELTKEISDFIDNLSVEF--DFDSLDISSPGFDMDYETDE- 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 489108599  96 LEGAVGKYVNISLYKAVEKQKVFEGNLVGFEEDVLTIEYMDKTRKKTVDI 145
Cdd:PRK14644  80 LENHIGEIIDVSLNKEVNKTDFITGELLENNPETITLKWNCKGQFRKVEI 129
PRK14637 PRK14637
ribosome maturation factor RimP;
23-155 1.21e-05

ribosome maturation factor RimP;


Pssm-ID: 237774 [Multi-domain]  Cd Length: 151  Bit Score: 42.93  E-value: 1.21e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599  23 FELVDVEYGKMGGDYVLSIFVDKPEGITLNDTADLTEIISPLLDQIKPDpfpEQYLLEVTSPGLERPLKTKEALEGAVGK 102
Cdd:PRK14637  23 CKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEALGGV---RDVFLEVSSPGIERVIKNAAEFSIFVGE 99

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 489108599 103 YVNISLYKAVEKQkvfEGNLVGFEEDVLTIEymdkTRKKTVDIPYNLVSKARL 155
Cdd:PRK14637 100 TVKVWFECTGQWQ---VGTIAEADETCLVLT----SDGVPVTIPYVQITKAQL 145
PRK14633 PRK14633
ribosome maturation factor RimP;
35-122 1.95e-05

ribosome maturation factor RimP;


Pssm-ID: 173096 [Multi-domain]  Cd Length: 150  Bit Score: 42.26  E-value: 1.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599  35 GDYVLSIFVDKPEGITLNDTADLTEIISPLLDQikPDPFPEQYLLEVTSPGLERPLKTKEALEGAVGKYVNISLYKAVEK 114
Cdd:PRK14633  30 GKLTIRIFIDHENGVSVDDCQIVSKEISAVFDV--EDPVSGKYILEVSSPGMNRQIFNIIQAQALVGFNVKAVTLAPVGS 107


                 ....*...
gi 489108599 115 QKVFEGNL 122
Cdd:PRK14633 108 QTKFKGVL 115
PRK02001 PRK02001
ribosome assembly cofactor RimP;
25-153 4.93e-04

ribosome assembly cofactor RimP;


Pssm-ID: 179358 [Multi-domain]  Cd Length: 152  Bit Score: 38.42  E-value: 4.93e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599  25 LVDVeygKMGGDYVLSIFVDKPEGITLNDTADLTEIISPLLDQIKPDpfpeqYLLEVTSPGLERPLKTKEALEGAVGKYV 104
Cdd:PRK02001  22 LVDL---TISPDNKIVVEIDGDEGVWIEDCVELSRAIEHNLDREEED-----FELEVGSAGLTSPLKVPRQYKKNIGREL 93

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 489108599 105 NISLykavEKQKVFEGNLVGFEED--VLTIEYMDK----TRKKTVD----IPYNLVSKA 153
Cdd:PRK02001  94 EVLT----KNGKKIEGELKSADENdiTLEVKAREPkeggKGKVTVEkeetITYDDIKEA 148
PRK14642 PRK14642
ribosome maturation factor RimP;
79-159 2.88e-03

ribosome maturation factor RimP;


Pssm-ID: 237775 [Multi-domain]  Cd Length: 197  Bit Score: 36.38  E-value: 2.88e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489108599  79 LEVTSPGLERPLKTKEALEGAVGKYVNISLYKAV---------EKQKVFEGNLVGFEEDVLTIEYMDKTRKKtvdiPYNL 149
Cdd:PRK14642  78 LEVSSPGIDRPLRHEQDFERFAGEVIDITLKAPIgaaaggqvsANRKKFRGTLERAESGGWQIVWSDEPPVK----PGQR 153

                         90
                 ....*....|
gi 489108599 150 VSKARLAVKL 159
Cdd:PRK14642 154 VSKKRVPAPL 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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