|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10433 |
PRK10433 |
putative RNA methyltransferase; Provisional |
1-228 |
2.68e-166 |
|
putative RNA methyltransferase; Provisional
Pssm-ID: 236693 Cd Length: 228 Bit Score: 457.53 E-value: 2.68e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 1 MRLTIILVAPARAENIGAAARAMKTMGFTQLRIVDSEAHLEPATRWVAHGSGDIIDNINVFPTLAEALHDVDFTVATTAR 80
Cdd:PRK10433 1 MRLTIILVAPARAENVGAAARAMKTMGFSELRIVDSQAHLEPAARWVAHGSGDILDNAKVFDTLAEALHDVDFTVATTAR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 81 SRAKFHYYATPVELVPLLQEKSTWMDHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLAGLIQ 160
Cdd:PRK10433 81 SRAKFHYYATPAELVPLLEEKSSWMSHAALVFGREDSGLTNEELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQ 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489109130 161 QPARNIEMTDEHQLQALRERVLRLLATLNVSDDIKLTDWLQQRMGLLEQRDTAMLHRFLHDIEKNLTK 228
Cdd:PRK10433 161 QPAKSDTTADEGQLQALRQRAMRLLTTLGVADDEKLVDWLQQRLGLLEQRDTAMLHRLLHDIEKKLTK 228
|
|
| rRNA_methyl_1 |
TIGR00050 |
RNA methyltransferase, TrmH family, group 1; This is part of the trmH (spoU) family of ... |
1-224 |
6.90e-94 |
|
RNA methyltransferase, TrmH family, group 1; This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 272876 [Multi-domain] Cd Length: 233 Bit Score: 274.66 E-value: 6.90e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 1 MRLTIILVAPARAENIGAAARAMKTMGFTQLRIVDSEAHLEPATRWVAHGSGDIIDNINVFPTLAEALHDVDFTVATTAR 80
Cdd:TIGR00050 2 ENIRIVLVEPSHPGNIGSIARAMKNMGLTELRLVNPRVKLEEEAYALAAGARDILDNAKVVDTLDEALDDCDFVVGTSAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 81 SRAKFHYYATPVELVPLLQEKSTwmdHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL--AGL 158
Cdd:TIGR00050 82 SRNLQRPMLTPRELAPKLVAEKG---KVALVFGREDSGLTNEELQKCHVLVSIPTSEEYPSLNLSHAVAVILYELrmAWL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489109130 159 IQQPAR-NIEMTDEHQLQALRERVLRLLATLNVSDD------IKLTDWLQQRMGlLEQRDTAMLHRFLHDIEK 224
Cdd:TIGR00050 159 AQQENLsEMPYATVDDLELLLEHLEETLLSLGFIPEhkprqvMRKFRRLYGRAG-LEKRELHILRGILRSIEK 230
|
|
| SpoU-like_TrmJ |
cd18093 |
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl ... |
3-155 |
1.89e-65 |
|
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 32 in both tRNASer1 and tRNAGln2. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349966 Cd Length: 153 Bit Score: 199.26 E-value: 1.89e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 3 LTIILVAPARAENIGAAARAMKTMGFTQLRIVDSEAH-LEPATRWVAHGSGDIIDNINVFPTLAEALHDVDFTVATTARS 81
Cdd:cd18093 1 IRVVLVEPQHPGNIGAVARAMKNFGLSDLRLVNPRCDdPEEAARALASGAEDVLENAKVYDTLEEALADCDLVVATTARP 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489109130 82 RAKFHYYATPVELVPLLQEKSTwMDHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155
Cdd:cd18093 81 RGLRRPLLTPRELAELLKEHAA-GGKVALVFGREDSGLTNEELALCDLLVTIPTNPEYPSLNLAQAVAIVLYEL 153
|
|
| TrmJ |
COG0565 |
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ... |
1-226 |
1.79e-63 |
|
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ribosomal structure and biogenesis]; tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440331 [Multi-domain] Cd Length: 237 Bit Score: 197.26 E-value: 1.79e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 1 MRLTIILVAPARAENIGAAARAMKTMGFTQLRIVDSEAHLEPATRWVAHGSGDIIDNINVFPTLAEALHDVDFTVATTAR 80
Cdd:COG0565 2 DNIRVVLVEPQHPGNIGAAARAMKNFGLSDLRLVNPRGWPDEEARAMASGADDVLENARVVDTLEEALADCDLVVGTTAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 81 SRAKFHYYATPVELVPLLQEKSTwmDH-AALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL--AG 157
Cdd:COG0565 82 PRELRKPVLTPREAAEELLARAA--GGkVALVFGRERSGLTNEELALCDALVTIPTNPEYPSLNLAQAVQVVAYELrkAA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489109130 158 LIQQPARNIEMT---DEHQLQALRERVLRLLATLNVSDDIKLTDWLQ------QRMGlLEQRDTAMLHRFLHDIEKNL 226
Cdd:COG0565 160 LEAPPLPPPPEPepaTAEELEGLYEHLEELLDAIGFLDPEKPEKLMRrlrrlfGRAR-LTEREVRTLRGILRALERRL 236
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
3-153 |
2.85e-32 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 114.17 E-value: 2.85e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 3 LTIILVAPARAENIGAAARAMKTMGFTQLRIVD--SEAHLEPATRWVAHGSGDIIDNInVFPTLAEALHDVDftvattar 80
Cdd:pfam00588 2 LVVVLDNIQDPGNLGAIIRTAAAFGADGLILVEprSADPYNPKAIRASAGALFHLPLV-VVDNLEEALKDLK-------- 72
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489109130 81 sRAKFHYYATPVELVPLlqEKSTWMDHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCY 153
Cdd:pfam00588 73 -EAGYAVVATSLGGKSL--YEIDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10433 |
PRK10433 |
putative RNA methyltransferase; Provisional |
1-228 |
2.68e-166 |
|
putative RNA methyltransferase; Provisional
Pssm-ID: 236693 Cd Length: 228 Bit Score: 457.53 E-value: 2.68e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 1 MRLTIILVAPARAENIGAAARAMKTMGFTQLRIVDSEAHLEPATRWVAHGSGDIIDNINVFPTLAEALHDVDFTVATTAR 80
Cdd:PRK10433 1 MRLTIILVAPARAENVGAAARAMKTMGFSELRIVDSQAHLEPAARWVAHGSGDILDNAKVFDTLAEALHDVDFTVATTAR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 81 SRAKFHYYATPVELVPLLQEKSTWMDHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLAGLIQ 160
Cdd:PRK10433 81 SRAKFHYYATPAELVPLLEEKSSWMSHAALVFGREDSGLTNEELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQ 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489109130 161 QPARNIEMTDEHQLQALRERVLRLLATLNVSDDIKLTDWLQQRMGLLEQRDTAMLHRFLHDIEKNLTK 228
Cdd:PRK10433 161 QPAKSDTTADEGQLQALRQRAMRLLTTLGVADDEKLVDWLQQRLGLLEQRDTAMLHRLLHDIEKKLTK 228
|
|
| rRNA_methyl_1 |
TIGR00050 |
RNA methyltransferase, TrmH family, group 1; This is part of the trmH (spoU) family of ... |
1-224 |
6.90e-94 |
|
RNA methyltransferase, TrmH family, group 1; This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 272876 [Multi-domain] Cd Length: 233 Bit Score: 274.66 E-value: 6.90e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 1 MRLTIILVAPARAENIGAAARAMKTMGFTQLRIVDSEAHLEPATRWVAHGSGDIIDNINVFPTLAEALHDVDFTVATTAR 80
Cdd:TIGR00050 2 ENIRIVLVEPSHPGNIGSIARAMKNMGLTELRLVNPRVKLEEEAYALAAGARDILDNAKVVDTLDEALDDCDFVVGTSAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 81 SRAKFHYYATPVELVPLLQEKSTwmdHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL--AGL 158
Cdd:TIGR00050 82 SRNLQRPMLTPRELAPKLVAEKG---KVALVFGREDSGLTNEELQKCHVLVSIPTSEEYPSLNLSHAVAVILYELrmAWL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489109130 159 IQQPAR-NIEMTDEHQLQALRERVLRLLATLNVSDD------IKLTDWLQQRMGlLEQRDTAMLHRFLHDIEK 224
Cdd:TIGR00050 159 AQQENLsEMPYATVDDLELLLEHLEETLLSLGFIPEhkprqvMRKFRRLYGRAG-LEKRELHILRGILRSIEK 230
|
|
| SpoU-like_TrmJ |
cd18093 |
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl ... |
3-155 |
1.89e-65 |
|
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 32 in both tRNASer1 and tRNAGln2. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349966 Cd Length: 153 Bit Score: 199.26 E-value: 1.89e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 3 LTIILVAPARAENIGAAARAMKTMGFTQLRIVDSEAH-LEPATRWVAHGSGDIIDNINVFPTLAEALHDVDFTVATTARS 81
Cdd:cd18093 1 IRVVLVEPQHPGNIGAVARAMKNFGLSDLRLVNPRCDdPEEAARALASGAEDVLENAKVYDTLEEALADCDLVVATTARP 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489109130 82 RAKFHYYATPVELVPLLQEKSTwMDHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155
Cdd:cd18093 81 RGLRRPLLTPRELAELLKEHAA-GGKVALVFGREDSGLTNEELALCDLLVTIPTNPEYPSLNLAQAVAIVLYEL 153
|
|
| TrmJ |
COG0565 |
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ... |
1-226 |
1.79e-63 |
|
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ribosomal structure and biogenesis]; tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440331 [Multi-domain] Cd Length: 237 Bit Score: 197.26 E-value: 1.79e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 1 MRLTIILVAPARAENIGAAARAMKTMGFTQLRIVDSEAHLEPATRWVAHGSGDIIDNINVFPTLAEALHDVDFTVATTAR 80
Cdd:COG0565 2 DNIRVVLVEPQHPGNIGAAARAMKNFGLSDLRLVNPRGWPDEEARAMASGADDVLENARVVDTLEEALADCDLVVGTTAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 81 SRAKFHYYATPVELVPLLQEKSTwmDH-AALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL--AG 157
Cdd:COG0565 82 PRELRKPVLTPREAAEELLARAA--GGkVALVFGRERSGLTNEELALCDALVTIPTNPEYPSLNLAQAVQVVAYELrkAA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489109130 158 LIQQPARNIEMT---DEHQLQALRERVLRLLATLNVSDDIKLTDWLQ------QRMGlLEQRDTAMLHRFLHDIEKNL 226
Cdd:COG0565 160 LEAPPLPPPPEPepaTAEELEGLYEHLEELLDAIGFLDPEKPEKLMRrlrrlfGRAR-LTEREVRTLRGILRALERRL 236
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
3-153 |
2.85e-32 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 114.17 E-value: 2.85e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 3 LTIILVAPARAENIGAAARAMKTMGFTQLRIVD--SEAHLEPATRWVAHGSGDIIDNInVFPTLAEALHDVDftvattar 80
Cdd:pfam00588 2 LVVVLDNIQDPGNLGAIIRTAAAFGADGLILVEprSADPYNPKAIRASAGALFHLPLV-VVDNLEEALKDLK-------- 72
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489109130 81 sRAKFHYYATPVELVPLlqEKSTWMDHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCY 153
Cdd:pfam00588 73 -EAGYAVVATSLGGKSL--YEIDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| PRK15114 |
PRK15114 |
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional |
5-155 |
2.87e-22 |
|
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional
Pssm-ID: 185069 Cd Length: 245 Bit Score: 91.35 E-value: 2.87e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 5 IILVAPARAENIGAAARAMKTMGFTQLRIVDSEAHLEPATRWVAHGSGDIIDNINVFPTLAEALHDVDFTVATTARSRAK 84
Cdd:PRK15114 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNATIVDTLDEALAGCSLVVGTSARSRTL 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489109130 85 FHYYATPVEL-VPLLQEKstwmDHA--ALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155
Cdd:PRK15114 87 PWPMLDPRECgLKSVAEA----ANApvALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEV 156
|
|
| SpoU-like_family |
cd18082 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
4-155 |
1.14e-13 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349955 Cd Length: 145 Bit Score: 65.71 E-value: 1.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 4 TIILVAPARAENIGAAARAMKTMGFTQLRIVDSEAhlEPATRWVAHGSGDIIDNIN--VFPTLAEALHDVD------FTV 75
Cdd:cd18082 1 HLVLDNIRSPGNIGSIFRTADAFGVEKIYLVGPTA--DIFDPKAKRTSRGTHFSVPyeRVDNFEEYLKSLKeegyplIGL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 76 ATTARSrakfhyyATPVELVPLLQEKstwmdhAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155
Cdd:cd18082 79 ELTDGS-------IPLSEFKFKKPKK------IALIFGNERSGLSPELLALCDYTVHIPMSGKNSSLNVSVATGIALYEF 145
|
|
| SpoU-like_TrmH |
cd18092 |
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group ... |
2-144 |
4.03e-05 |
|
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the ribose of the universally conserved guanosine 18 (G18) position in tRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349965 Cd Length: 162 Bit Score: 42.45 E-value: 4.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 2 RLTIILVAPARAENIGAAARAMKTMGFTQLRIVDSEAHLEP-------ATRWVahgsgdiidNINVFPTLAEALHDV--- 71
Cdd:cd18092 16 DLTVVLENVHDPHNASAVLRTCDAFGVQDVHVIEPKNKFKKnrgvamgADKWL---------DVHRHDSTEECLAALkeq 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489109130 72 DFTVATTArsrakFHYYATPVELVPLlQEKStwmdhaALVFGREDSGLTNEELALADVLTGVPMVADYPSLNL 144
Cdd:cd18092 87 GYRIVATS-----LSPDAVPLDELDY-TRPT------ALVFGNEKDGVSEEALAAADERVYIPMYGFVESLNV 147
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
87-155 |
2.70e-04 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 39.72 E-value: 2.70e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489109130 87 YYATPVELVPLLQEKstWMDHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155
Cdd:cd18095 77 VAADLDGGSSLYDLD--LPKPVALVLGNEGNGLSDELLELCDKRVTIPMSGGVESLNVAVAAAILLYEL 143
|
|
| SpoU-like |
cd18097 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
109-155 |
2.82e-04 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349970 Cd Length: 144 Bit Score: 39.86 E-value: 2.82e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 489109130 109 ALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155
Cdd:cd18097 98 ALVLGNEVRGVSPEVLALCDAVVEIPMFGRKNSLNVAVAAAVALYEL 144
|
|
| SpoU-like_RNA-MTase |
cd18104 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
107-153 |
9.91e-04 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349977 Cd Length: 146 Bit Score: 38.33 E-value: 9.91e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 489109130 107 HAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCY 153
Cdd:cd18104 94 PIAIVVGSESEGLSEFWLKAADERVRIPMAGQADSLNVSVAAAILLY 140
|
|
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
66-156 |
1.99e-03 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 38.25 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489109130 66 EALHDVDFTVATTArSRAKFHYYATPvelvpllqekstWMDHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLG 145
Cdd:COG0566 182 EELKEAGFWVVGTD-LDGEASLYEVD------------LPGPVALVLGNEGKGLSRLVLEACDELVRIPMAGGVESLNVA 248
|
90
....*....|.
gi 489109130 146 QAVMVYCYQLA 156
Cdd:COG0566 249 VAAAILLYEAA 259
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| SpoU-like_TrmL |
cd18094 |
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL ... |
110-148 |
6.93e-03 |
|
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349967 Cd Length: 145 Bit Score: 35.89 E-value: 6.93e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 489109130 110 LVFGREDSGLTNEEL-ALADVLTGVPMVADYPSLNLGQAV 148
Cdd:cd18094 95 LVFGRESTGLPEEILdAFPDRRLRIPMRPKVRSLNLSNSV 134
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