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Conserved domains on  [gi|489113178|ref|WP_003023032|]
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MULTISPECIES: molybdate ABC transporter permease subunit [Citrobacter]

Protein Classification

molybdate ABC transporter permease( domain architecture ID 10793250)

molybdate ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter for molybdenum, and is responsible for the translocation of the substrate across the membrane

Gene Symbol:  modB
Gene Ontology:  GO:0055052|GO:0015689|GO:0043190|GO:0140359|GO:0042626|GO:0016020
PubMed:  11421278|25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
modB PRK09421
molybdate ABC transporter permease subunit;
1-228 3.77e-137

molybdate ABC transporter permease subunit;


:

Pssm-ID: 181841  Cd Length: 229  Bit Score: 383.89  E-value: 3.77e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   1 MILTDPEWQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWL 80
Cdd:PRK09421   1 MILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  81 YDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARS 160
Cdd:PRK09421  81 YEWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARS 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489113178 161 LGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESAAARLCIISIVLALISLLISEWLARISRERTG 228
Cdd:PRK09421 161 LGEFGATITFVSNIPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRLG 228
 
Name Accession Description Interval E-value
modB PRK09421
molybdate ABC transporter permease subunit;
1-228 3.77e-137

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 383.89  E-value: 3.77e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   1 MILTDPEWQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWL 80
Cdd:PRK09421   1 MILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  81 YDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARS 160
Cdd:PRK09421  81 YEWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARS 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489113178 161 LGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESAAARLCIISIVLALISLLISEWLARISRERTG 228
Cdd:PRK09421 161 LGEFGATITFVSNIPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRLG 228
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 3-226 7.15e-93

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 271.54  E-value: 7.15e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   3 LTDPEWQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWLYD 82
Cdd:COG4149    1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  83 WFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLG 162
Cdd:COG4149   81 LFGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489113178 163 EFGATITFVSNIPGETRTIPSAMYTLIQTpGGESAAARLCIISIVLALISLLISEWLARISRER 226
Cdd:COG4149  161 EFGATLMFAGNIPGKTQTLPLAIYDAVEA-GDYAAAHALSLILLAISFVVLLLLNLLNRRRRRR 223
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 12-221 1.36e-66

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 204.40  E-value: 1.36e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   12 ILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGeWLYDWFGITFAFS 91
Cdd:TIGR02141   1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIG-KLLELFGISLVFT 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   92 WRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGEFGATITFV 171
Cdd:TIGR02141  80 FTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 489113178  172 SNIPGETRTIPSAMYTLIQtpGGESAAARLCIISIVLALISLLISEWLAR 221
Cdd:TIGR02141 160 GNIPGETQTIPLAIYDAVE--SDYELAHQLSLVLLAISLIVLLLVELLNK 207
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 12-213 1.68e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 71.93  E-value: 1.68e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  12 ILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWLYDWFGitfafs 91
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLP------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  92 wrgAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGEFGATITFV 171
Cdd:cd06261   76 ---ALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 489113178 172 SNIPGetrtIPSAMYTLIQTPGGESAAARLCIISIVLALISL 213
Cdd:cd06261  153 GGEAP----GPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 14-184 1.06e-10

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 58.71  E-value: 1.06e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  14 SLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWlydwfgiTFAFSWR 93
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL-------GLLYTPT 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  94 GAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLpGIIVGTVLAFARSLGEFGATITFVSN 173
Cdd:NF038017  74 AMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKEARF-ALLAAVLAGFGRAISEVGAVMMVGGN 152

                        170
                 ....*....|.
gi 489113178 174 IPGETRTIPSA 184
Cdd:NF038017 153 IRGYTRVLTTA 163
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 79-221 2.09e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.00  E-value: 2.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   79 WLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFA 158
Cdd:pfam00528  39 LVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFG 118

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489113178  159 RSLGEFgATITFVSNIPGETRTIPSAMYTLiQTPGGESAAARLCIISIVLALISLLISEWLAR 221
Cdd:pfam00528 119 GALGGA-VLLEFLGSWPGLGLLLIEAILGY-DYPEIQGPVLAAALILLLLNLLVDILQRLLDP 179
 
Name Accession Description Interval E-value
modB PRK09421
molybdate ABC transporter permease subunit;
1-228 3.77e-137

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 383.89  E-value: 3.77e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   1 MILTDPEWQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWL 80
Cdd:PRK09421   1 MILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  81 YDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARS 160
Cdd:PRK09421  81 YEWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARS 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489113178 161 LGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESAAARLCIISIVLALISLLISEWLARISRERTG 228
Cdd:PRK09421 161 LGEFGATITFVSNIPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRLG 228
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 3-226 7.15e-93

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 271.54  E-value: 7.15e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   3 LTDPEWQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWLYD 82
Cdd:COG4149    1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  83 WFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLG 162
Cdd:COG4149   81 LFGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489113178 163 EFGATITFVSNIPGETRTIPSAMYTLIQTpGGESAAARLCIISIVLALISLLISEWLARISRER 226
Cdd:COG4149  161 EFGATLMFAGNIPGKTQTLPLAIYDAVEA-GDYAAAHALSLILLAISFVVLLLLNLLNRRRRRR 223
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 12-221 1.36e-66

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 204.40  E-value: 1.36e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   12 ILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGeWLYDWFGITFAFS 91
Cdd:TIGR02141   1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIG-KLLELFGISLVFT 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   92 WRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGEFGATITFV 171
Cdd:TIGR02141  80 FTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 489113178  172 SNIPGETRTIPSAMYTLIQtpGGESAAARLCIISIVLALISLLISEWLAR 221
Cdd:TIGR02141 160 GNIPGETQTIPLAIYDAVE--SDYELAHQLSLVLLAISLIVLLLVELLNK 207
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 2-224 1.13e-53

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 173.40  E-value: 1.13e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   2 ILTDPE-WQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWL 80
Cdd:COG0555   46 VLTSPRvLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLL 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  81 YDwFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARS 160
Cdd:COG0555  126 AP-LGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARA 204

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489113178 161 LGEFGATITFVSNIPGETRTIPSAMYTLIQTpGGESAAARLCIISIVLALISLLISEWLARISR 224
Cdd:COG0555  205 LGEFGAVIFIAGNLPMKTEILPLLIYLKLEE-GDYAGATAIALVLLLISFLLLLLINLLQRRSR 267
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 3-215 2.45e-40

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 137.91  E-value: 2.45e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178    3 LTDPEWQ-AVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWLy 81
Cdd:TIGR01581  14 LTDPENIkALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYL- 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   82 DWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSL 161
Cdd:TIGR01581  93 EAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARAL 172

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 489113178  162 GEFGATITFVSNIPGETRTIPSAMYTLIQTpGGESAAARLCIISIVLALISLLI 215
Cdd:TIGR01581 173 GEFGATLMFAGSIQGKTRTLPLAIYLNIQS-DNIEAAVASALLLLVIAFLLLLV 225
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 2-214 8.28e-39

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 135.17  E-value: 8.28e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178    2 ILTDPEWQAVI-LSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWL 80
Cdd:TIGR00969  52 NATDPIAVSAYnLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWL 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   81 YDwFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARS 160
Cdd:TIGR00969 132 AS-FGIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARA 210

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 489113178  161 LGEFGATITFVSNIPGETRTIPSAMYTLIQ---TPGGESAAARLCIISIV-LALISLL 214
Cdd:TIGR00969 211 LGEFGAVVVVSGNIPGKTLTLPLLIEERLEqydYPGAYVIAAVLLLVSLVtLFLINAL 268
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
8-224 2.83e-35

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 131.05  E-value: 2.83e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   8 WQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWLYDWFGIT 87
Cdd:COG1178   53 WRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALFGLE 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  88 FA--FSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGEFG 165
Cdd:COG1178  133 PPdiYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFG 212

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 489113178 166 AtitfVSNIPGETRTIPSAMYTLIQTPGGESAAARLCIISIVLALISLLISEWLARISR 224
Cdd:COG1178  213 T----PLVLGGGYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRRRR 267
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 10-221 7.20e-34

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 122.05  E-value: 7.20e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   10 AVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWLYdWFGITFA 89
Cdd:TIGR02139  51 AYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLA-PLGIKIA 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   90 FSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGEFGATIT 169
Cdd:TIGR02139 130 FTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSVIF 209

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 489113178  170 FVSNIPGETRTIPSAMYTLIQT---PGGESAAARLCIISIVLALISLLISEWLAR 221
Cdd:TIGR02139 210 IAGNLPMKTEIAPLLIFQKLEQydyAGATAIASVMLIISFVILLFINLLQWWALR 264
cysT CHL00187
sulfate transport protein; Provisional
 4-191 1.93e-32

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 117.81  E-value: 1.93e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   4 TDPEWQ-AVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWLyD 82
Cdd:CHL00187  49 TEPIALsAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLL-S 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  83 WFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLG 162
Cdd:CHL00187 128 HLGIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIG 207

                        170       180
                 ....*....|....*....|....*....
gi 489113178 163 EFGATITFVSNIPGETRTIPSAMYTLIQT 191
Cdd:CHL00187 208 EYGSIVIISSNIPFKDLVASVLIFQSLEQ 236
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
2-215 2.80e-31

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 115.62  E-value: 2.80e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   2 ILTDPEWQAVI-LSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWL 80
Cdd:PRK10971  50 VITNPQVVAAYkVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWL 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  81 YDwFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARS 160
Cdd:PRK10971 130 AK-FDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRS 208

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489113178 161 LGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESAAArlcIISIVLAlISLLI 215
Cdd:PRK10971 209 LGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASA---IASVILA-ASLLL 259
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 2-226 5.32e-30

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 111.74  E-value: 5.32e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   2 ILTDPEW-QAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWL 80
Cdd:COG1177   53 LFSDPRLlDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLW 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  81 ydwfgitfafswrGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARS 160
Cdd:COG1177  133 -------------GLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLS 199

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489113178 161 LGEFGATItFVSniPGETRTIPSAMYTLIQTPGGESAAArLCIISIVLALISLLISEWLARISRER 226
Cdd:COG1177  200 FDEFVITL-FLA--GPGVTTLPVYIYSMIRRGISPEINA-LSTLLILLSLLLLLLAERLRRRGERR 261
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
1-221 2.07e-26

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 106.01  E-value: 2.07e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   1 MILTDPEWQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVL--PPVVVGYLLLVsmgrRGFIGE 78
Cdd:COG1178  330 VLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVpgIVLGLGLLLLF----NRPLPL 405

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  79 WLYDWFGITfafswrgaVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFA 158
Cdd:COG1178  406 LLYGTLAIL--------VLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFV 477

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489113178 159 RSLGEFGATITFVsniPGETRTIPSAMYTLIQTPGGESAAArLCIISIVLALISLLISEWLAR 221
Cdd:COG1178  478 TSMKELSATLLLR---PPGFETLAVLIYQLASSGRYGEAAA-LALLLVLVSLLPVLLLERLLG 536
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 2-228 7.09e-25

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 99.07  E-value: 7.09e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   2 ILTDPE-WQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWL 80
Cdd:COG1176   59 LFTDPLyLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLL 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  81 YdWFGIT-----FAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVL 155
Cdd:COG1176  139 L-ALGLIdeplrLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLL 217

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489113178 156 AFARSLGEFgATITFVSniPGETRTIPSAMYTLIQTPGGESAAARLCIISIVLALISLLISEWLARISRERTG 228
Cdd:COG1176  218 VFIPALGAF-VTPALLG--GGKVLMIGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
3-207 1.23e-22

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 92.89  E-value: 1.23e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   3 LTDPEW-QAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWLy 81
Cdd:PRK11602  57 LADPDMlHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWL- 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  82 DWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSL 161
Cdd:PRK11602 136 DEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAI 215

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 489113178 162 GEFGATITFVSNIPGETRTIPSAMYTLIQ---TPGGESAAARLCIISIV 207
Cdd:PRK11602 216 GEFGAVSVVSGSIRGETLSLPLQIELLEQdynTVGSFTAAALLTLMAII 264
TupA COG4662
ABC-type tungstate transport system, periplasmic component [Inorganic ion transport and ...
 5-229 4.74e-18

ABC-type tungstate transport system, periplasmic component [Inorganic ion transport and metabolism];


Pssm-ID: 443699 [Multi-domain]  Cd Length: 232  Bit Score: 79.38  E-value: 4.74e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   5 DPE-WQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVG---YLLLVSMGRRGFIGeWL 80
Cdd:COG4662   19 DPElWEIVLLSLRVSLTATLIAALIGLPLGALLALKRFPGRRLVISLLNTLMGLPPVVVGllvYLLLSRSGPLGFLG-LL 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  81 YdwfgiTFAfswrGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLpGIIVGTVLAFARS 160
Cdd:COG4662   98 F-----TPT----AMIIAQTVLALPIVAALTRAAVEDLDRRLRETLRSLGASRLQALLTLLWEARF-GLLAAVLAGFGRA 167

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489113178 161 LGEFGATITFVSNIPGETRTIPSAMytLIQTPGGESAAArlCIISIVLALISLLISEWLARISRERTGR 229
Cdd:COG4662  168 ISEVGAVMMVGGNIKGYTRVMTTAI--ALETSKGEFALA--IALGIVLLAIALLVNALLSLLQGRGRRR 232
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 12-213 1.68e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 71.93  E-value: 1.68e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  12 ILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWLYDWFGitfafs 91
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLP------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  92 wrgAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGEFGATITFV 171
Cdd:cd06261   76 ---ALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 489113178 172 SNIPGetrtIPSAMYTLIQTPGGESAAARLCIISIVLALISL 213
Cdd:cd06261  153 GGEAP----GPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 88-228 6.01e-13

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 65.83  E-value: 6.01e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  88 FAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGE---- 163
Cdd:COG0581  110 LGFSLLAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGEtapl 189

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489113178 164 ---FGATITFVSNIPGETRTIPSAMYTLIQTPGGES----AAARLCIISIVLALIslLISEWLARISRERTG 228
Cdd:COG0581  190 lftAGVSPFLPLSLFDPFATLPVHIYNLASSPYPAAqelaWAAALVLLLLVLLLN--LLARLLRRRFRKKLK 259
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 8-166 2.97e-12

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 65.09  E-value: 2.97e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178    8 WQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWLYDwFGIt 87
Cdd:TIGR03262  53 LQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGG-FSI- 130

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489113178   88 faFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGEFGA 166
Cdd:TIGR03262 131 --YGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGV 207
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 14-184 1.06e-10

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 58.71  E-value: 1.06e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  14 SLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWlydwfgiTFAFSWR 93
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL-------GLLYTPT 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  94 GAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLpGIIVGTVLAFARSLGEFGATITFVSN 173
Cdd:NF038017  74 AMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLLKEARF-ALLAAVLAGFGRAISEVGAVMMVGGN 152

                        170
                 ....*....|.
gi 489113178 174 IPGETRTIPSA 184
Cdd:NF038017 153 IRGYTRVLTTA 163
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 75-228 4.76e-10

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 58.18  E-value: 4.76e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  75 FIGEWLYDWFG-ITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGT 153
Cdd:COG0573  138 VLVPLLRDLFPwPPSGFSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAV 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178 154 VLAFARSLGE-------FGATITFVSNIPGETRTIPSAMYTLI--QTPGGESAAArLCIISIVLALISLL---ISEWLAR 221
Cdd:COG0573  218 ILGLGRALGEtmavlmvAGNAPQIPFSLFDPGRTLTALIALEFgeAPFGSLHYSA-LFALGLVLFVITLLvnlLARLIVR 296


                 ....*..
gi 489113178 222 ISRERTG 228
Cdd:COG0573  297 RYREKYG 303
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 5-225 7.74e-10

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 57.30  E-value: 7.74e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   5 DPEWQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVsmgrrgfigewLYDWF 84
Cdd:PRK09500  53 DSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLV-----------LFMLL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  85 GITFAFswrGAVLAAAV-MSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGE 163
Cdd:PRK09500 122 GIQLGF---WSLLFAHItFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDD 198

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489113178 164 FGATiTFVSNIPGEtrTIPSAMYTLIQTpGGESAAARLCIISIVLALISLLISEWLARISRE 225
Cdd:PRK09500 199 VVVS-SFVTGPSYE--ILPLKIYSMVKV-GVSPEVNALATILLVLSLVLVILSQLLARDKTK 256
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
2-226 1.55e-09

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 56.68  E-value: 1.55e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   2 ILTDPE-WQAVILSLKVSSLAVLFSLPFGIFFAWLLVRcKFPGKALLDSVLHLPLVLPPVVVGYL-LLVSMGRRGFIGEW 79
Cdd:COG1175   68 LFTDPRfWNALGNTLLFTVVSVPLQLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVISPVVVALIwKWLFNPDYGLLNAL 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  80 LyDWFGITfAFSWRG-------AVLAAAV-MSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIV 151
Cdd:COG1175  147 L-GALGLE-PINWLGdpslalpAVIIVTVwKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILF 224

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489113178 152 GTVLAFARSLGEFGATITFVSNIPG-ETRTIPSAMYTLIQTPG--GESAAarlciISIVLALISLLISEWLARISRER 226
Cdd:COG1175  225 VLVLSTIGALQVFDLVYVLTGGGPGnSTTTLVLYIYQTAFQQFdfGYASA-----IAVVLFLIILVLTLLQLRLLRRR 297
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 79-221 2.09e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.00  E-value: 2.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   79 WLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFA 158
Cdd:pfam00528  39 LVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFG 118

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489113178  159 RSLGEFgATITFVSNIPGETRTIPSAMYTLiQTPGGESAAARLCIISIVLALISLLISEWLAR 221
Cdd:pfam00528 119 GALGGA-VLLEFLGSWPGLGLLLIEAILGY-DYPEIQGPVLAAALILLLLNLLVDILQRLLDP 179
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 14-216 2.46e-09

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 56.12  E-value: 2.46e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   14 SLKVSSLAVLFSLPFGIFFA-WLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGR--RGFIGEWLYDWFGITFAF 90
Cdd:TIGR02138  68 TLITSLIALLIAVPVGIGIAiFLSEIAPKRVRSVLKPVVELLAGIPSVVYGFWGLFVLVPflKPHFQPFLGSNLGLIPLF 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   91 SwrGAVLAA----AVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGEF-- 164
Cdd:TIGR02138 148 G--GPILTAgivlAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETma 225

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 489113178  165 ------GATITFVSNIPGETRTIPSAMYTLI-QTPGGESAAARLCIISIVLALISLLIS 216
Cdd:TIGR02138 226 vtmvigNVFPISPLSLFDPGTTITSLIANQFgEASGGSVHTSALFALGLVLFVITLLVN 284
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 86-226 4.23e-09

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 55.32  E-value: 4.23e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   86 ITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGEFG 165
Cdd:TIGR00974 122 LGGGFSLLAGALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETA 201

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489113178  166 ATI-------TFVSNIPGETRTIPSAMYTLIQTPGGESAAARLCIISIVLALISLLISeWLARISRER 226
Cdd:TIGR00974 202 PLLftaggsaFTPPNLFDPFATLPVLIYNLASEGPYVEAQQLAWAAALVLIVLVLLLN-LIARLLRRR 268
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 3-224 1.10e-08

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 54.04  E-value: 1.10e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   3 LTDPE-WQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPG-KALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWL 80
Cdd:COG4132   56 LTSPFyLQAFWNSIWLSLASALIGAVIGLLLAYALRRGGPGWlRRAVLAFSGVASNFAGVPLAFAFIATLGRNGLVTLLL 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  81 YDWfGITFA-----FSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVL 155
Cdd:COG4132  136 KQL-GIDLYdgfnlYSFWGLILVYLYFQIPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLL 214

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489113178 156 AFARSLGEFG---ATITFVSNIpgetrtIPSAMYTLIQ--TPGGESAAARLCIISIVLALISLLISEWLARISR 224
Cdd:COG4132  215 LFANAFGAYAtayALTGGNYNL------VPIRIGALISgdVLLDPNLGAALALGMIVIMALVMALYQWLQRRSR 282
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 8-221 1.56e-08

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 53.56  E-value: 1.56e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   8 WQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVG---YLLLVSMGrrgfigewLYDwf 84
Cdd:COG0395   73 GRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLiplYLLFRQLG--------LLN-- 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  85 gitfafSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGEF 164
Cdd:COG0395  143 ------TYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDF 216

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178 165 GATITFVSNipGETRTIPSAMYTLI---QTPGGESAAArLCIISIVLALISLLISEWLAR 221
Cdd:COG0395  217 LWPLILLTS--PDLRTLPVGLASFQgqyGTDWGLLMAA-AVIATLPVLILFLFLQRYFVR 273
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 3-164 1.59e-08

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 53.54  E-value: 1.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   3 LTDPEWQAVIL-SLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWLY 81
Cdd:PRK09497  56 LLDPLYAEVLLhSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLL 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  82 dWFGITFA-----FSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLA 156
Cdd:PRK09497 136 -WLGVIDTpirimFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLV 214


                 ....*...
gi 489113178 157 FARSLGEF 164
Cdd:PRK09497 215 LLPAMGMF 222
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 83-161 5.72e-08

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 51.69  E-value: 5.72e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489113178  83 WFGITFAfswrGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSL 161
Cdd:COG0600  120 WFGIGEA----SKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAW 194
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 2-165 1.25e-07

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 51.16  E-value: 1.25e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   2 ILTDPEWQAVIL-SLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWL 80
Cdd:PRK15050  65 VLGSPDFRGALLtTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVNIAL 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  81 YDWFG-----ITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVL 155
Cdd:PRK15050 145 QRLFGleappLDFLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSL 224

                        170
                 ....*....|
gi 489113178 156 AFARSLGEFG 165
Cdd:PRK15050 225 CLLLTLNEFG 234
pstA PRK11268
phosphate ABC transporter permease PstA;
90-163 1.60e-06

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 47.76  E-value: 1.60e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489113178  90 FSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGE 163
Cdd:PRK11268 151 FSGWAGVIALALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGE 224
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 8-221 2.26e-06

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 47.61  E-value: 2.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178    8 WQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGeWLYDWFGIT 87
Cdd:TIGR01253  46 QHLILFSFGQAFLSALLSIFFAIFLARALFRKPFLGKKALLKLCALTFILPALVAIFGIIGIYGRQGWLA-TLANLFGLE 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   88 FAFS---WRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGEF 164
Cdd:TIGR01253 125 WQFHiygLQGILIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFASF 204

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 489113178  165 gATITFVSNIPGETrTIPSAMYTLIQTPGGESAAARLCIISIVLALISLLISEWLAR 221
Cdd:TIGR01253 205 -ATVLSLGGGPQAT-TIELAIYQAILFDFDLAKAALFALLQFVCCLGLFLLSQRFSK 259
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 94-164 1.39e-05

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 45.09  E-value: 1.39e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489113178  94 GAVLAAAVMSF-PLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGEF 164
Cdd:PRK10683 185 LAVYIGIVYAYlPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEF 256
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 115-226 3.12e-05

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 44.07  E-value: 3.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178 115 LEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGEFgATITFVSNiPGETrTIPSAMYTLIQTPGG 194
Cdd:PRK10592 163 LRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDL-VIASFVSG-PGAT-TLPMLVFSSVRMGVN 239

                         90       100       110
                 ....*....|....*....|....*....|..
gi 489113178 195 ESAAARLCIISIVLALISLLISEWLARISRER 226
Cdd:PRK10592 240 PEINALATLILGVVGIVGFIAWYLMARAEKQR 271
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 84-168 9.62e-05

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 42.94  E-value: 9.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  84 FGITFAFSW------RGAVLAA-AVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLA 156
Cdd:COG4135  411 FGLQVLLLRlgldgtWLAVIWAhLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVG 490

                         90
                 ....*....|..
gi 489113178 157 FARSLGEFGATI 168
Cdd:COG4135  491 FAVSVAQYLPTL 502
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 88-152 1.60e-04

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 41.19  E-value: 1.60e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489113178  88 FAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVG 152
Cdd:COG1174   78 LGIGPAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAG 142
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 8-149 2.54e-04

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 41.36  E-value: 2.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   8 WQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGEWLyDWFGIT 87
Cdd:PRK09433  43 WHVLRFSFWQAFLSALLSVLPAIPLARALYRRRFPGRGLLLRLCAMTLVLPVLVAVFGLLSVYGRSGWLAQLL-QALGLE 121

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489113178  88 FAFS---WRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLM---LPGI 149
Cdd:PRK09433 122 WPFSiygLQGILLAHVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWPYLrrqLPPV 189
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 8-216 1.14e-03

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 39.43  E-value: 1.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178   8 WQAVILSLKVSSLAVLFSLPFGIFFAWLLVRCKFPGKALLDSVLHLPLVLPPVVVGylLLVSMGrrgfigewlydWF--- 84
Cdd:PRK09433 318 WQALWTSLRIALAAALLAVVLTMMLLWSSRELRLRQRKLAAQALELSGMLILAMPG--IVLATG-----------LFlll 384

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  85 -GITFAFSWRGAVLAA--AVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSL 161
Cdd:PRK09433 385 rNTTDLPASALGIVILtnALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFAFACALSL 464

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489113178 162 GEFGATITFVSNipgETRTIPSAMYTLIQTPGGESAAarlciisiVLALISLLIS 216
Cdd:PRK09433 465 GDFGVIALFGSQ---DFRTLPFLLYQQLGSYRSQDAA--------VTALLLLLLC 508
malG PRK10998
maltose ABC transporter permease MalG;
94-219 4.27e-03

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 37.38  E-value: 4.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489113178  94 GAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLAFARSLGEFGATITFVSN 173
Cdd:PRK10998 160 GGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRD 239

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 489113178 174 IPGETRTIPSAMYTLIQTP--GGESAAARLCIISIvlALISLLISEWL 219
Cdd:PRK10998 240 VNSYTLAVGMQQYLNPQNYlwGDFAAAAVLSAIPI--TVVFLLAQRWL 285
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 114-156 6.46e-03

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 36.99  E-value: 6.46e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 489113178 114 ALEGVDVKLEQAARTLGAGRWRVFMTITLPLMLPGIIVGTVLA 156
Cdd:COG4209  199 AITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLILN 241
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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