|
Name |
Accession |
Description |
Interval |
E-value |
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
1-336 |
1.41e-175 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 489.97 E-value: 1.41e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 1 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
Cdd:PRK09478 1 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 81 VVAATLLQSMENANKVFPEMATMPIIVVVLIVCVIGAIIGLVNGIIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP 160
Cdd:PRK09478 81 VVAATLLQSMDNANKVFPELATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDFVGASP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 161 ISGFDSGFSTFAQGFIALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVALNLLIIYALSGV 240
Cdd:PRK09478 161 ISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 241 FYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGGI 320
Cdd:PRK09478 241 FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAI 320
|
330
....*....|....*.
gi 489117549 321 IIFAVALDSLKYARKK 336
Cdd:PRK09478 321 IIFAVALDSLKYARKK 336
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
1-336 |
3.13e-145 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 413.14 E-value: 3.13e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 1 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
Cdd:COG4211 1 EKKIKKKKIKNFLLNNAIYIVLLLLIIAIIIINPNFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 81 VVAATLLQSMENANKVFPEMATMPIIVVVLIVCVIGAIIGLVNGIIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP 160
Cdd:COG4211 81 VISASLLQSGDYAGKFFPNLPELPIIVPILIAIAIGALFGLINGFFVAKLKVPPFIATLGTMLIVYGINSIYTDRPGAQP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 161 ISGFDSGFSTFAQGFIALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVALNLLIIYALSGV 240
Cdd:COG4211 161 IGGLDESFTNFAQGSINIGGFGIPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYALAGA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 241 FYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGGI 320
Cdd:COG4211 241 LYGFAGFLEAARTGSATNNYGNGYELDAIAACVVGGVSFSGGIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYIIKGLI 320
|
330
....*....|....*.
gi 489117549 321 IIFAVALDSLKYARKK 336
Cdd:COG4211 321 IIAAVALDIRKYLKKK 336
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
49-328 |
6.43e-57 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 185.30 E-value: 6.43e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 49 SSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMenankvfpemaTMPIIVVVLIVCVIGAIIGLVNGIIIA 128
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNA-----------GLPIPLAILAALAVGALIGLLNGLLVA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 129 YLNVTPFITTLGTMIIVYGINSLYydfVGASPISGFDSGFSTFAQGFIALGsfrLSYITFYALIAVAFVWVLWNKTRFGK 208
Cdd:cd06579 70 YLRIPPFIVTLGTMFILRGLALLI---TGGRPISGLPPLFSFFLGGGLILG---IPVPVLIALAVALVAWFLLRRTRFGR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 209 NIFAIGGNPEAAKVSGVNVALNLLIIYALSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFG 288
Cdd:cd06579 144 YLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLG 223
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 489117549 289 VVTGVIIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALD 328
Cdd:cd06579 224 TLLGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
48-328 |
6.43e-24 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 100.61 E-value: 6.43e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 48 QSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMEnankvfpematMPIIVVVLIVCVIGAIIGLVNGIII 127
Cdd:NF040906 38 QNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWG-----------MPWWLAVLLCLLVGALIGAWQGFWV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 128 AYLNVTPFITTLGTMIIVYGinsLYYDFVGASPISGFDSGFSTFAQGFI--ALGSFRLSYITFY--ALIAVAFVWVLW-- 201
Cdd:NF040906 107 AYVGIPAFIVTLAGMLVFRG---LTLVVLGGQSIGPFPDGFQKISSGFLpdLFGGTGLHLLTLLlgVLAAAALVWSQLrg 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 202 -----------------------------------------------------------NKTRFGKNIFAIGGNPEAAKV 222
Cdd:NF040906 184 rrrrikyglevepmalfiaklvliaaailfftyllasyrglpnvliilgvlilvysfvtNRTVIGRHIYAVGGNEKAAKL 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 223 SGVNVALNLLIIYALSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYG 302
Cdd:NF040906 264 SGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVMGVLNNG 343
|
330 340
....*....|....*....|....*.
gi 489117549 303 LTYIGVNPYWQYIIKGGIIIFAVALD 328
Cdd:NF040906 344 MSILGIGIDWQQVIKGLVLLAAVAFD 369
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
47-325 |
2.52e-19 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 86.16 E-value: 2.52e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 47 TQSSVRIIIALGVAGLI-VTQGTDLSAGRQVGLAAVVAATLLQSMenankvfpemaTMPIIVVVLIVCVIGAIIGLVNGI 125
Cdd:pfam02653 7 TLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLL-----------GPGLWLALPVGILVGAAVGLLIGI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 126 IIAYLNVTPFITTLGTMIIVYGINSLYYDfvGASPISGFDSGFSTFAQGFIALGSFRLSYITFYALIAVAFVWVLWNKTR 205
Cdd:pfam02653 76 LTLRLKINEVIITLLLNLAALGLALFLVT--GILGGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTK 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 206 FGKNIFAIGGNPEAAKVSGVNVALNLLIIYALSGVFYAFGGLLEAGRIGSAT-NNLGFMYELDAIAACvvggvSFSGGVG 284
Cdd:pfam02653 154 FGRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpSNFGVGLGLDAIAAV-----VLGGAGS 228
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 489117549 285 TVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGGIIIFAV 325
Cdd:pfam02653 229 PIGVVIGSLIIGLVQSLGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
1-336 |
1.41e-175 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 489.97 E-value: 1.41e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 1 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
Cdd:PRK09478 1 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 81 VVAATLLQSMENANKVFPEMATMPIIVVVLIVCVIGAIIGLVNGIIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP 160
Cdd:PRK09478 81 VVAATLLQSMDNANKVFPELATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDFVGASP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 161 ISGFDSGFSTFAQGFIALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVALNLLIIYALSGV 240
Cdd:PRK09478 161 ISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 241 FYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGGI 320
Cdd:PRK09478 241 FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAI 320
|
330
....*....|....*.
gi 489117549 321 IIFAVALDSLKYARKK 336
Cdd:PRK09478 321 IIFAVALDSLKYARKK 336
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
1-336 |
3.13e-145 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 413.14 E-value: 3.13e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 1 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
Cdd:COG4211 1 EKKIKKKKIKNFLLNNAIYIVLLLLIIAIIIINPNFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 81 VVAATLLQSMENANKVFPEMATMPIIVVVLIVCVIGAIIGLVNGIIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP 160
Cdd:COG4211 81 VISASLLQSGDYAGKFFPNLPELPIIVPILIAIAIGALFGLINGFFVAKLKVPPFIATLGTMLIVYGINSIYTDRPGAQP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 161 ISGFDSGFSTFAQGFIALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVALNLLIIYALSGV 240
Cdd:COG4211 161 IGGLDESFTNFAQGSINIGGFGIPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYALAGA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 241 FYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGGI 320
Cdd:COG4211 241 LYGFAGFLEAARTGSATNNYGNGYELDAIAACVVGGVSFSGGIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYIIKGLI 320
|
330
....*....|....*.
gi 489117549 321 IIFAVALDSLKYARKK 336
Cdd:COG4211 321 IIAAVALDIRKYLKKK 336
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
2-336 |
1.64e-64 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 206.88 E-value: 1.64e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 2 SALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAV 81
Cdd:COG1172 5 TTTARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 82 VAATLLQSMEnankvfpematMPIIVVVLIVCVIGAIIGLVNGIIIAYLNVTPFITTLGTMIIVYGINSLYydfVGASPI 161
Cdd:COG1172 85 VAALLLVALG-----------LPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLL---TGGRPI 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 162 SGFDSGFSTFAQGFIalgsFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVALNLLIIYALSGVF 241
Cdd:COG1172 151 SGLPDAFRALGQGSL----LGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLL 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 242 YAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGGII 321
Cdd:COG1172 227 AGLAGILLAARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAII 306
|
330
....*....|....*
gi 489117549 322 IFAVALDSLKYARKK 336
Cdd:COG1172 307 LLAVLLDRLRRRRRA 321
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
49-328 |
6.43e-57 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 185.30 E-value: 6.43e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 49 SSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMenankvfpemaTMPIIVVVLIVCVIGAIIGLVNGIIIA 128
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNA-----------GLPIPLAILAALAVGALIGLLNGLLVA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 129 YLNVTPFITTLGTMIIVYGINSLYydfVGASPISGFDSGFSTFAQGFIALGsfrLSYITFYALIAVAFVWVLWNKTRFGK 208
Cdd:cd06579 70 YLRIPPFIVTLGTMFILRGLALLI---TGGRPISGLPPLFSFFLGGGLILG---IPVPVLIALAVALVAWFLLRRTRFGR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 209 NIFAIGGNPEAAKVSGVNVALNLLIIYALSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFG 288
Cdd:cd06579 144 YLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLG 223
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 489117549 289 VVTGVIIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALD 328
Cdd:cd06579 224 TLLGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
17-331 |
1.96e-43 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 152.39 E-value: 1.96e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 17 GIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLlqsmenanKV 96
Cdd:COG4158 31 GMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLV--------SL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 97 FPEMATMpiivVVLIVCVIGAIIGLVNGIIIAYLNVTPFITTLGTMIIVYGINSLyydFVGASPISGFDSGFSTfaqgfi 176
Cdd:COG4158 103 LPGLGLL----GIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARL---LANGTTVFNPDLPFAW------ 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 177 aLGSFRLSYITFYALIAVAFV---WVLWNKTRFGKNIFAIGGNPEAAKVSGVNVALNLLIIYALSGVFYAFGGLLEAGRI 253
Cdd:COG4158 170 -IGNGYLLGIPWLVVIALAVVlasWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARL 248
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489117549 254 GSAT-NNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALDSLK 331
Cdd:COG4158 249 YAANgLQLGQGYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRYR 327
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
2-328 |
2.00e-40 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 144.09 E-value: 2.00e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 2 SALNKKSFLT--YLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLA 79
Cdd:PRK09512 3 QTVSGRRYFTkaWLIEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALT 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 80 AVVAATLLqSMEnankvfpematMPIIVVVLIVCVIGAIIGLVNGIIIAYLNVTPFITTLGTMIIVYGINSLYYDfvgAS 159
Cdd:PRK09512 83 GAVAASIV-GIE-----------VNALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTD---GS 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 160 PISgfdSGFSTFAQGFIALGSFRLSYI---TFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVALNLLIIYA 236
Cdd:PRK09512 148 PIN---TGFTDNADLFGWFGIGRPLGIptpVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYA 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 237 LSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYII 316
Cdd:PRK09512 225 LCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIV 304
|
330
....*....|..
gi 489117549 317 KGGIIIFAVALD 328
Cdd:PRK09512 305 KAVVILLAVLVD 316
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
14-330 |
6.83e-34 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 126.81 E-value: 6.83e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 14 KEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSmena 93
Cdd:PRK09699 11 KYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLA---- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 94 nkvfpemATMPIIVVVLIVCVIGAIIGLVNGIIIAYLNVTPFITTLGTMIIVYGINSLYYDfvgASPISGFDSGFSTFAQ 173
Cdd:PRK09699 87 -------GVDPFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISD---ANSVYGFSFDFVNFFA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 174 GFIalgsFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVALNLLIIYALSGVFYAFGGLLEAGRI 253
Cdd:PRK09699 157 ASV----IGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARL 232
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489117549 254 GSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALDSL 330
Cdd:PRK09699 233 GAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRL 309
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
2-336 |
3.01e-31 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 120.17 E-value: 3.01e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 2 SALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAV 81
Cdd:PRK11285 16 PPKSRFSLWRIWDQYGMLVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 82 VAATLLQsmenankvfpemATMPIIVVVLIVCVIGAIIGLVNGIIIAYLNVTPFITTLGTMIIVYGINSLYYD--FVGAS 159
Cdd:PRK11285 96 VTAVVIN------------ATESLWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDgkAVGIS 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 160 PISGFDSGFSTFaqgfialgsFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVALNLLIIYALSG 239
Cdd:PRK11285 164 DERFFALGYANF---------FGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQG 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 240 VFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGG 319
Cdd:PRK11285 235 LVSALAGVILASRMTSGQPMTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGL 314
|
330
....*....|....*..
gi 489117549 320 IIIFAVALDSLKYARKK 336
Cdd:PRK11285 315 ILLAAVLFDRYKQRAKR 331
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
48-328 |
6.43e-24 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 100.61 E-value: 6.43e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 48 QSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMEnankvfpematMPIIVVVLIVCVIGAIIGLVNGIII 127
Cdd:NF040906 38 QNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWG-----------MPWWLAVLLCLLVGALIGAWQGFWV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 128 AYLNVTPFITTLGTMIIVYGinsLYYDFVGASPISGFDSGFSTFAQGFI--ALGSFRLSYITFY--ALIAVAFVWVLW-- 201
Cdd:NF040906 107 AYVGIPAFIVTLAGMLVFRG---LTLVVLGGQSIGPFPDGFQKISSGFLpdLFGGTGLHLLTLLlgVLAAAALVWSQLrg 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 202 -----------------------------------------------------------NKTRFGKNIFAIGGNPEAAKV 222
Cdd:NF040906 184 rrrrikyglevepmalfiaklvliaaailfftyllasyrglpnvliilgvlilvysfvtNRTVIGRHIYAVGGNEKAAKL 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 223 SGVNVALNLLIIYALSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYG 302
Cdd:NF040906 264 SGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVMGVLNNG 343
|
330 340
....*....|....*....|....*.
gi 489117549 303 LTYIGVNPYWQYIIKGGIIIFAVALD 328
Cdd:NF040906 344 MSILGIGIDWQQVIKGLVLLAAVAFD 369
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
47-325 |
2.52e-19 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 86.16 E-value: 2.52e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 47 TQSSVRIIIALGVAGLI-VTQGTDLSAGRQVGLAAVVAATLLQSMenankvfpemaTMPIIVVVLIVCVIGAIIGLVNGI 125
Cdd:pfam02653 7 TLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLL-----------GPGLWLALPVGILVGAAVGLLIGI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 126 IIAYLNVTPFITTLGTMIIVYGINSLYYDfvGASPISGFDSGFSTFAQGFIALGSFRLSYITFYALIAVAFVWVLWNKTR 205
Cdd:pfam02653 76 LTLRLKINEVIITLLLNLAALGLALFLVT--GILGGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTK 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 206 FGKNIFAIGGNPEAAKVSGVNVALNLLIIYALSGVFYAFGGLLEAGRIGSAT-NNLGFMYELDAIAACvvggvSFSGGVG 284
Cdd:pfam02653 154 FGRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpSNFGVGLGLDAIAAV-----VLGGAGS 228
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 489117549 285 TVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGGIIIFAV 325
Cdd:pfam02653 229 PIGVVIGSLIIGLVQSLGLGALGSPPELSLLVLGALLILVL 269
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
54-334 |
3.29e-19 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 86.81 E-value: 3.29e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 54 IIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQsmenankvfpemATMPIIVVVLIVCVIGAIIGLVNGIIIAYLNVT 133
Cdd:PRK15038 47 IVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQ------------SGVPMPLAILLTLLLGALCGLINAGLIIYTGVN 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 134 PFITTLGTMIIVYGINSLYYDFVGASPISGFdSGFSTFAQGFIALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAI 213
Cdd:PRK15038 115 PLVITLGTLYLFGGSALLLSGMAGATGYEGI-GGFPMAFTDFANLDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNVFLI 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 214 GGNPEAAKVSGVNVALNLLIIYALSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGV 293
Cdd:PRK15038 194 GQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAV 273
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 489117549 294 IIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALDSLKYAR 334
Cdd:PRK15038 274 LLVGYLQQGLQMAGVPNQISSALSGALLIVVVVGRSVSLHR 314
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
20-271 |
9.21e-18 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 82.31 E-value: 9.21e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 20 VVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMEnankvfpe 99
Cdd:PRK11618 13 GVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYG-------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 100 matMPIIVVVLIVCVIGAIIGLVNGIIIAYLNVTPFITTLGTMIIVYGINSLyydfVGASPISGFDSGFSTFAQGFIAL- 178
Cdd:PRK11618 85 ---WSPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFL----VSEESIPINHPFYDTLSSLAWKLp 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 179 GSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVALNLLIIYALSGVFYAFGGLLEAGRIGSATN 258
Cdd:PRK11618 158 GGGRLSAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYA 237
|
250
....*....|...
gi 489117549 259 NLGFMYELDAIAA 271
Cdd:PRK11618 238 LAAVGVELDAIAA 250
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
14-328 |
6.64e-17 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 80.16 E-value: 6.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 14 KEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQsmena 93
Cdd:PRK15432 9 RELTALLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLN----- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 94 nkvfpemATMPIIVVVLIVCVIGAIIGLVNGIIIAYLNVTPFITTLGTMIIVYGINSLYydfVGASPISGFDSGFSTFAQ 173
Cdd:PRK15432 84 -------AGYSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLW---TGGKWIEGLPAELKQLSA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 174 GfIALGsfrLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVALNLLIIYALSGVFYAFGGLLEAGRI 253
Cdd:PRK15432 154 P-ILLG---ISPIGWLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQI 229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489117549 254 GSATNNLGFMYELDAIAACVVGGVSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALD 328
Cdd:PRK15432 230 GFIPNQTGTGLEMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFD 304
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
49-325 |
1.04e-12 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 67.30 E-value: 1.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 49 SSVRIIIALGVAGLIVTQG-TDLSAGRQVGLAAVVAATLLqsmenankvfpeMATMPIIVVVLIVCVIGAIIGLVNGIII 127
Cdd:cd06574 1 GLIYAILALGVYIVFRILGfPDLTVDGSFPLGAAVAAILI------------VAGYNPWLALIAAILAGAAAGLVTGFLH 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 128 AYLNVTPFITTLGTMIIVYGINSLYYDfVGASPISGFDSGFSTFaQGFIALGSFRLSYITFYALIAVAFVWVLWNKTRFG 207
Cdd:cd06574 69 TRLKINGLLAGILIMIGLYSINLRIMG-GPNIPLGTRDTLLGLL-LLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLG 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 208 KNIFAIGGNPEAAKVSGVNVALNLLIIYALSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVV--GGVSFSGGVGT 285
Cdd:cd06574 147 LAMRATGDNPDMARSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIggAIVGRRTIKAS 226
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 489117549 286 VFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGGIIIFAV 325
Cdd:cd06574 227 ILGVIIGAILYRIALALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
116-270 |
1.31e-10 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 61.68 E-value: 1.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 116 GAIIGLVNGIIIAYLNVTPFITTL-----GTMIIVYGINSLYYDFVGASPISGFdsgFSTFAQGFIALGSFRLSYITFYA 190
Cdd:COG4603 127 GALWAAIPGLLKARFGVNEVITTLmlnyiALYLVNYLVRGPLRDPGSGFPQTPP---IPESARLPRLLPGTRLHLGLLIA 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 191 LIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVALNLLIIYALSGVFYAFGGLLE-AGRIGSATNNLGFMYELDAI 269
Cdd:COG4603 204 LLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVEvLGVQGRLTPGFSPGYGFTGI 283
|
.
gi 489117549 270 A 270
Cdd:COG4603 284 A 284
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
116-271 |
2.53e-09 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 56.68 E-value: 2.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 116 GAIIGLVNGIIIAYLNVTPFITTLGTMIIVYGInslyydfvgaspisgfdsgfstfaqgfialgsfrLSYITFYALIAVA 195
Cdd:cd06580 61 GALWALLPALLKAKLGVNEVISGLMLNYIALGL----------------------------------TSYLLLLALLLVI 106
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489117549 196 FVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVALNLLIIYALSGVFYAFGGLLE-AGRIGSATNNLGFMYELDAIAA 271
Cdd:cd06580 107 LVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLvLGVQGRFTEGMSAGYGFIAIAV 183
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
132-271 |
7.73e-08 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 52.76 E-value: 7.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 132 VTPFITTLGTMIIVYGINSLYYdfvGASPISgfdsgFSTFAQGFIALGSFRLSYITFY----ALIAVAFVWVLWNKTRFG 207
Cdd:COG0559 93 LALLLATIGLSLVLQGLVLLIF---GADPRS-----FPALLSGSVELGGVSIPAYRLFiivvALVLLAALWLFLRRTRLG 164
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489117549 208 KNIFAIGGNPEAAKVSGVNVALNLLIIYALSGVFYAFGGLLeAGRIGSATNNLGFMYELDAIAA 271
Cdd:COG0559 165 LAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVL-LAPIYSVSPTMGFLLGLKAFAA 227
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
116-246 |
1.14e-07 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 52.38 E-value: 1.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 116 GAIIGLVNGIIIAYLNVTPFITTLGTMIIVYGINS-LYYDFVGASPISGFDSGFSTFAQGFIA----LGS--FRLSYITF 188
Cdd:COG1079 73 GALLALLHAFLTITLRANQIVSGLALNLLALGLTAfLGRLLFGQGGQTPSIPGLPPIPIPGLSdipvLGPllFGQSPLVY 152
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 489117549 189 YALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVALNLLIIYALSGVFYAFGG 246
Cdd:COG1079 153 LALLLVPLVWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGALAGLGG 210
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
136-257 |
6.92e-07 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 49.75 E-value: 6.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 136 ITTLGTMIIVYGInslyydFVGASPISGFDSGFSTFAQ--GFIALGSFRLSYITFYALIAVAFVWVLWN--KTRFGKNIF 211
Cdd:cd06581 79 IATLAFAEIVRLL------ALNWSSLTGGSNGLSGIPPplLGGLLLSSPLAFYYLVLAVLLLVLLLLRRlvRSPFGRALR 152
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 489117549 212 AIGGNPEAAKVSGVNVALNLLIIYALSGVFYAFGGLLEAGRIGSAT 257
Cdd:cd06581 153 AIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVS 198
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
132-271 |
1.73e-06 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 48.58 E-value: 1.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 132 VTPFITTLGTMIIVYGINSLYYDFVGASPISGFDSGFSTfaqGFIALGSFRLSYITFyALIAVAFVWVLWNKTRFGKNIF 211
Cdd:cd06582 83 LTLLITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVEL---GGVTIPPYRLFIIAV-ALVLLAALYLFLRRTRLGRAIR 158
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 212 AIGGNPEAAKVSGVNVALNLLIIYALSGVFYAFGGLLeAGRIGSATNNLGFMYELDAIAA 271
Cdd:cd06582 159 AVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVL-LAPITGVSPTMGLLLLLKAFAA 217
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
116-272 |
4.02e-06 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 47.77 E-value: 4.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 116 GAIIGLVNGIIIAYLNVTPF-ITTLGTMIIVYGInslyydFVGASPISGFDSGFSTFAQGFIALGSFRLSYITFY--ALI 192
Cdd:COG4177 68 AALLGLLIGLPALRLRGDYLaIATLAFAEIVRLL------ALNLESLTGGADGLSGIPRPTLFGLDLGSPLAFYYlvLAL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489117549 193 AVAFVWVLWN--KTRFGKNIFAIGGNPEAAKVSGVNVALNLLIIYALSGVFYAFGGLLEAGRIGSAT-NNLGFMYELDAI 269
Cdd:COG4177 142 LVLVLLLLRRlvRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSpESFSFLLSIEIL 221
|
...
gi 489117549 270 AAC 272
Cdd:COG4177 222 LMV 224
|
|
| |
