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Conserved domains on  [gi|489121400|ref|WP_003031228|]
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MULTISPECIES: 30S ribosomal protein S16 [Enterobacteriaceae]

Protein Classification

small ribosomal subunit protein bS16( domain architecture ID 10000742)

small ribosomal subunit protein bS16, also called 30S ribosomal protein S16, is a ribosomal protein that may have a cation-dependent endonuclease activity

CATH:  3.30.1320.10
Gene Ontology:  GO:0003735|GO:0006412|GO:0015935
PubMed:  24524803|12900959|11297922|11290319
SCOP:  4001077

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-78 2.31e-43

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 439998  Cd Length: 76  Bit Score: 134.79  E-value: 2.31e-43
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489121400  1 MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEegTRLDLDRIAHWVGQGATISDRVATLIKAA 78
Cdd:COG0228   1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPAR--IKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
 
Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-78 2.31e-43

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 134.79  E-value: 2.31e-43
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489121400  1 MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEegTRLDLDRIAHWVGQGATISDRVATLIKAA 78
Cdd:COG0228   1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPAR--IKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-68 3.79e-32

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 105.92  E-value: 3.79e-32
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489121400   8 RHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATIS 68
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPGEPRVKLDEERIKYWLGVGAQPT 61
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 2-78 1.31e-30

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 102.70  E-value: 1.31e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489121400   2 VTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEegTRLDLDRIAHWVGQGATISDRVATLIKAA 78
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKEDL--VKLNVERIKHWLSKGAQPTDTVRKLLKKA 75
rps16 CHL00005
ribosomal protein S16
 1-79 1.70e-18

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 71.98  E-value: 1.70e-18
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489121400  1 MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEkeegTRLDLDRIAHWVGQGATISDRVATLIKAAN 79
Cdd:CHL00005  1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQ----TYLNVPAILYFLEKGAQPTETVYDILKKAE 75
 
Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 1-78 2.31e-43

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 134.79  E-value: 2.31e-43
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489121400  1 MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEegTRLDLDRIAHWVGQGATISDRVATLIKAA 78
Cdd:COG0228   1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPAR--IKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
Ribosomal_S16 pfam00886
Ribosomal protein S16;
8-68 3.79e-32

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 105.92  E-value: 3.79e-32
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489121400   8 RHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATIS 68
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPGEPRVKLDEERIKYWLGVGAQPT 61
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 2-78 1.31e-30

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 102.70  E-value: 1.31e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489121400   2 VTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEegTRLDLDRIAHWVGQGATISDRVATLIKAA 78
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKEDL--VKLNVERIKHWLSKGAQPTDTVRKLLKKA 75
rps16 CHL00005
ribosomal protein S16
 1-79 1.70e-18

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 71.98  E-value: 1.70e-18
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489121400  1 MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEkeegTRLDLDRIAHWVGQGATISDRVATLIKAAN 79
Cdd:CHL00005  1 MVKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQ----TYLNVPAILYFLEKGAQPTETVYDILKKAE 75
rpsP PRK14521
30S ribosomal protein S16; Provisional
 2-69 4.51e-17

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 70.96  E-value: 4.51e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489121400   2 VTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPiaSEKEEGTRLDLDRIAHWVGQGATISD 69
Cdd:PRK14521   3 VKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNP--NTNPATVDLNFDRAVYWLMNGAQPTD 68
rpsP PRK14520
30S ribosomal protein S16; Provisional
 2-76 2.22e-16

30S ribosomal protein S16; Provisional


Pssm-ID: 184724 [Multi-domain]  Cd Length: 155  Bit Score: 68.57  E-value: 2.22e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489121400   2 VTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPiaseKEEGTRLDLD--RIAHWVGQGATISDRVATLIK 76
Cdd:PRK14520   3 VKIKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYHP----KEEPSLIEIDseRAQYWLSVGAQPTEPVLALLK 75
rpsP PRK14522
30S ribosomal protein S16; Provisional
 4-76 6.75e-11

30S ribosomal protein S16; Provisional


Pssm-ID: 172988 [Multi-domain]  Cd Length: 116  Bit Score: 53.85  E-value: 6.75e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489121400   4 IRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPiasEKEEGTRLDLDRIAHWVGQGATISDRVATLIK 76
Cdd:PRK14522   5 IRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDP---HSEQNYQLKSERIFYWLNQGAELTEKAGALVK 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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