|
Name |
Accession |
Description |
Interval |
E-value |
| recA |
PRK09354 |
recombinase A; Provisional |
13-365 |
0e+00 |
|
recombinase A; Provisional
Pssm-ID: 236476 [Multi-domain] Cd Length: 349 Bit Score: 640.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 13 KKFGEERQKALDTALKNIEKDFGKGAIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHA 92
Cdd:PRK09354 1 MAMDEEKQKALEAALKQIEKQFGKGSIMRLGDDAAMDVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 93 VAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDI 172
Cdd:PRK09354 81 IAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 173 GDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKgtgdEKD 252
Cdd:PRK09354 161 GDSHVGLQARLMSQALRKLTGNISKSNTTVIFINQIREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIK----DGD 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 253 TNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKIGQGSENAKKYLADHPEI 332
Cdd:PRK09354 237 EVIGNRTKVKVVKNKVAPPFKQAEFDIMYGEGISREGELIDLGVELGIIEKSGAWYSYNGEKIGQGRENAKQYLKENPEL 316
|
330 340 350
....*....|....*....|....*....|...
gi 489131013 333 FDEIDHKVRVHYGLIEDDAEDEKNAEATKSANK 365
Cdd:PRK09354 317 ADEIEKKIREKLGLSAAAAEEEEEEDEEEEEEE 349
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
13-363 |
0e+00 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 625.66 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 13 KKFGEERQKALDTALKNIEKDFGKGAIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHA 92
Cdd:COG0468 4 KVASSEKEKALEAALSQIEKQFGKGSIMRLGDKARQDVEVISTGSLALDIALGVGGLPRGRIVEIYGPESSGKTTLALHA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 93 VAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDI 172
Cdd:COG0468 84 IAEAQKAGGIAAFIDAEHALDPEYAKKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDLIVVDSVAALVPKAEIEGEM 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 173 GDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKgtgdEKD 252
Cdd:COG0468 164 GDSHVGLQARLMSQALRKLTGAISKSNTTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIK----DGD 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 253 TNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKIGQGSENAKKYLADHPEI 332
Cdd:COG0468 240 EVIGNRTRVKVVKNKVAPPFKEAEFDIMYGEGISKEGELLDLAVELGIIEKSGAWYSYGGERLGQGRENAKQFLKENPEL 319
|
330 340 350
....*....|....*....|....*....|.
gi 489131013 333 FDEIDHKVRVHYGLIEDDAEDEKNAEATKSA 363
Cdd:COG0468 320 AEEIEAKIREKLGLGAVSEAAAAEEEEDEEE 350
|
|
| tigrfam_recA |
TIGR02012 |
protein RecA; This model describes orthologs of the recA protein. RecA promotes hybridization ... |
18-341 |
0e+00 |
|
protein RecA; This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 162659 [Multi-domain] Cd Length: 321 Bit Score: 556.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 18 ERQKALDTALKNIEKDFGKGAIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQ 97
Cdd:TIGR02012 1 DKQKALEAALAQIEKQFGKGSIMRLGEKTVMDVETISTGSLALDLALGVGGLPKGRIIEIYGPESSGKTTLALHAIAEAQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 98 KEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHV 177
Cdd:TIGR02012 81 KAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 178 GLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDEkdtnVGK 257
Cdd:TIGR02012 161 GLQARLMSQALRKLTGALSKSNTTAIFINQIREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTVKQGEEV----VGN 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 258 ETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKIGQGSENAKKYLADHPEIFDEID 337
Cdd:TIGR02012 237 RTKVKVVKNKVAPPFREAEFDILYGEGISKLGEIIDLAVELDIIKKSGSWYSYGDEKLGQGRENAKAFLKENPELAQEIE 316
|
....
gi 489131013 338 HKVR 341
Cdd:TIGR02012 317 KKVR 320
|
|
| RecA |
pfam00154 |
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA ... |
21-286 |
3.47e-178 |
|
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Pssm-ID: 425488 [Multi-domain] Cd Length: 262 Bit Score: 495.38 E-value: 3.47e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 21 KALDTALKNIEKDFGKGAIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEG 100
Cdd:pfam00154 1 KALEAALKQIEKQFGKGSIMKLGDEKKLDVETISTGSLALDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 101 GIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQ 180
Cdd:pfam00154 81 GTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADMLVRSGAIDLIVVDSVAALVPKAEIEGEMGDSHVGLQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 181 ARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDekdtNVGKETK 260
Cdd:pfam00154 161 ARLMSQALRKLTGSISKSNTTVIFINQIREKIGVMFGNPETTTGGRALKFYASVRLDIRRIGQIKQGEE----VIGNKTK 236
|
250 260
....*....|....*....|....*.
gi 489131013 261 IKVVKNKVAPPFKEAFVEIMYGEGIS 286
Cdd:pfam00154 237 VKVVKNKVAPPFKEAEFDIMYGEGIS 262
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
49-287 |
5.68e-158 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 443.15 E-value: 5.68e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 49 KVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELL 128
Cdd:cd00983 1 DVEVIPTGSLSLDIALGIGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKLGGTAAFIDAEHALDPEYAKKLGVDIDNLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 129 LSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQL 208
Cdd:cd00983 81 VSQPDTGEQALEIADTLIRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSLSKSKTTVIFINQL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489131013 209 REKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKgtgdEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISK 287
Cdd:cd00983 161 REKIGVMFGNPETTTGGNALKFYASVRLDIRRIELIK----EGEDVIGNRTKVKVVKNKVAPPFKQAEFDILYGEGISR 235
|
|
| recA |
PRK09519 |
intein-containing recombinase RecA; |
18-267 |
5.36e-115 |
|
intein-containing recombinase RecA;
Pssm-ID: 77219 [Multi-domain] Cd Length: 790 Bit Score: 352.86 E-value: 5.36e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 18 ERQKALDTALKNIEKDFGKGAIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQ 97
Cdd:PRK09519 6 DREKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 98 KEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEIDGDIGDSHV 177
Cdd:PRK09519 86 AAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHV 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 178 GLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRGNTQIKgtgdEKDTNVGK 257
Cdd:PRK09519 166 GLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGVMFGSPETTTGGKALKFYASVRMDVRRVETLK----DGTNAVGN 241
|
250
....*....|
gi 489131013 258 ETKIKVVKNK 267
Cdd:PRK09519 242 RTRVKVVKNK 251
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
72-239 |
1.10e-45 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 155.20 E-value: 1.10e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 72 GRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQAL-----------GVNIDELLLSQPDSGEQGLE 140
Cdd:cd01393 1 GKITEIYGPPGSGKTQLALQLAANALLLGGGVVWIDTEGAFPPSRLVQIleaspsselelAEALSRLLYFRPPDTLAHLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 141 IAGKLIDSGA----VDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMF 216
Cdd:cd01393 81 ALDSLPESLFpppnTSLVVVDSVSALFRKAFPRGGDGDSSSSLRARLLSQLARALQKLAAQFNLAVVVTNQVTTKIRGGS 160
|
170 180
....*....|....*....|....
gi 489131013 217 G-NPETTPGGRALKFYASVRLDVR 239
Cdd:cd01393 161 GaSLVPPALGNTWEHSVSTRLLLY 184
|
|
| recA |
PRK09519 |
intein-containing recombinase RecA; |
263-354 |
1.13e-19 |
|
intein-containing recombinase RecA;
Pssm-ID: 77219 [Multi-domain] Cd Length: 790 Bit Score: 90.92 E-value: 1.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 263 VVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKIGQGSENAKKYLADHPEIFDEIDHKVRV 342
Cdd:PRK09519 687 VVVHNCSPPFKQAEFDILYGKGISREGSLIDMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVENADVADEIEKKIKE 766
|
90
....*....|....*
gi 489131013 343 HYGL---IEDDAEDE 354
Cdd:PRK09519 767 KLGIgavVTDDPSND 781
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
54-237 |
2.10e-18 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 83.13 E-value: 2.10e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 54 SSGSLALDIALGaGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEhALDPA-YAQALGVNIDELL---- 128
Cdd:cd01394 2 STGSKSLDSLLG-GGVERGTITQIYGPPGSGKTNICLQLAVEAAKQGKKVVYIDTE-GLSPErFQQIAGERFESIAsnii 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 129 LSQPDS-GEQGLEI--AGKLIDSGAVDLVVIDSVAALVpRAEIDGDIGdshvglQARMMSQAMRKLSaSINKTKTIAIFI 205
Cdd:cd01394 80 VFEPYSfDEQGVAIqeAEKLLKSDKVDLVVVDSATALY-RLELGDDSE------ANRELSRQMSKLL-SIARKYDIPVVI 151
|
170 180 190
....*....|....*....|....*....|....*..
gi 489131013 206 -NQlrekVGIMFGNPETTP-GGRALKfYAS---VRLD 237
Cdd:cd01394 152 tNQ----VYSDIDDDRLKPvGGTLLE-HWSkaiIRLE 183
|
|
| recomb_radB |
TIGR02237 |
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ... |
60-213 |
2.18e-15 |
|
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Pssm-ID: 274047 [Multi-domain] Cd Length: 209 Bit Score: 74.37 E-value: 2.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 60 LDIALGaGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEhALDPAYAQALGVNIDELLLSQ------PD 133
Cdd:TIGR02237 1 IDELLG-GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE-GLSPERFKQIAEDRPERALSNfivfevFD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 134 SGEQGLEI--AGKLIDSGAVDLVVIDSVAALVpRAEIDGDIGDSHVGLQARMmsqamrKLSASINKTKTIAIFI-NQLRE 210
Cdd:TIGR02237 79 FDEQGVAIqkTSKFIDRDSASLVVVDSFTALY-RLELSDDRISRNRELARQL------TLLLSLARKKNLAVVItNQVYT 151
|
...
gi 489131013 211 KVG 213
Cdd:TIGR02237 152 DVN 154
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
53-251 |
8.62e-14 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 70.41 E-value: 8.62e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 53 MSSGSLALDIALGaGGYPKGRIIEIYGPESSGKTTVA--LHAVAQAQKE----GGIAAFIDAEHALDP----AYAQALGV 122
Cdd:pfam08423 19 ITTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLChtLCVTCQLPLEmgggEGKALYIDTEGTFRPerlvAIAERYGL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 123 NIDELLLSQP-------DSGEQGLEIAGKLIDSGAVDLVVIDSVAALVpRAEID--GDIGDSHVGLqARMMSqAMRKLSA 193
Cdd:pfam08423 98 DPEDVLDNVAyaraynsEHQMQLLQQAAAMMSESRFALLIVDSATALY-RTDFSgrGELAERQQHL-AKFLR-TLQRLAD 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489131013 194 SINktktIAIFI-NQLREKVG---IMF-GNPETTPGGRALKFYASVRLDVRgntqiKGTGDEK 251
Cdd:pfam08423 175 EFG----VAVVItNQVVAQVDgaaGMFsGDPKKPIGGHIMAHASTTRLSLR-----KGRGEQR 228
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
54-237 |
8.71e-13 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 67.19 E-value: 8.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 54 SSGSLALDIALGaGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEhALDPA-YAQALGVNIDELL---- 128
Cdd:PRK09361 6 PTGCKMLDELLG-GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPErFKQIAGEDFEELLsnii 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 129 LSQP-DSGEQGLEI--AGKLIDSGaVDLVVIDSVAALVpRAEIDgDIGDShvGLQARMMSQAMRKLSaSINKTKTIAIFI 205
Cdd:PRK09361 84 IFEPsSFEEQSEAIrkAEKLAKEN-VGLIVLDSATSLY-RLELE-DEEDN--SKLNRELGRQLTHLL-KLARKHDLAVVI 157
|
170 180 190
....*....|....*....|....*....|....*..
gi 489131013 206 -NQLREKVgimfGNPETTP-GGRALKfYAS---VRLD 237
Cdd:PRK09361 158 tNQVYSDI----DSDGLRPlGGHTLE-HWSktiLRLE 189
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
61-213 |
5.66e-10 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 58.87 E-value: 5.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 61 DIALGaGGYPKGRIIEIYGPESSGKTTVALHAVAQA----QKEGGIAA--FIDAEHALDPAYAQALGVNIDELLLSQP-D 133
Cdd:cd19493 1 DTALA-GGLPLGAITEITGASGSGKTQFALTLASSAampaRKGGLDGGvlYIDTESKFSAERLAEIAEARFPEAFSGFmE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 134 SGEQGLEIAGKL---------------------IDSGAVDLVVIDSVAALVPRA--EIDGDIGDSHVGLqARMMSqAMRk 190
Cdd:cd19493 80 ENERAEEMLKRVavvrvttlaqllerlpnleehILSSGVRLVVIDSIAALVRREfgGSDGEVTERHNAL-AREAS-SLK- 156
|
170 180
....*....|....*....|....
gi 489131013 191 lsaSINKTKTIAIF-INQLREKVG 213
Cdd:cd19493 157 ---RLAEEFRIAVLvTNQATTHFG 177
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
53-251 |
1.53e-09 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 57.76 E-value: 1.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 53 MSSGSLALDIALGaGGYPKGRIIEIYGPESSGKTTVAlHAVA---QAQKE----GGIAAFIDAEHALDP----AYAQALG 121
Cdd:cd19515 1 ISTGSKELDKLLG-GGIETQAITEVFGEFGSGKTQLC-HQLAvnvQLPPEegglNGKAVYIDTENTFRPerimQMAKALG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 122 VNIDELL-----LSQPDSGEQGL--EIAGKLIDSG-AVDLVVIDSVAALVpRAEIdgdIGDSHVGLQARMMSQAMRKLsA 193
Cdd:cd19515 79 LDPDEVLdniyvARAYNSNHQMLlvEKAEDLIKEGnNIKLLIVDSLTSHF-RAEY---VGRGTLAERQQKLNKHLHDL-H 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 489131013 194 SINKTKTIAIFI-NQLREKVGIMFGNPETTPGGRALKFYASVRLDVRgntqiKGTGDEK 251
Cdd:cd19515 154 RLADLYNIAVLVtNQVMAKPDAFFGDPTQAIGGHILGHAATFRVYLR-----KGKGGKR 207
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
53-210 |
4.68e-09 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 56.08 E-value: 4.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 53 MSSGSLALDIALGaGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDP--AYAQALGVNIDELLLS 130
Cdd:COG0467 2 VPTGIPGLDELLG-GGLPRGSSTLLSGPPGTGKTTLALQFLAEGLRRGEKGLYVSFEESPEQllRRAESLGLDLEEYIES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 131 Q--------PDSGEQGL-EIAGKL---IDSGAVDLVVIDSVAALVPRAEidgdigdshvglQARMMSQAMRKLSASINKT 198
Cdd:COG0467 81 GllriidlsPEELGLDLeELLARLreaVEEFGAKRVVIDSLSGLLLALP------------DPERLREFLHRLLRYLKKR 148
|
170
....*....|..
gi 489131013 199 KTIAIFINQLRE 210
Cdd:COG0467 149 GVTTLLTSETGG 160
|
|
| recomb_DMC1 |
TIGR02238 |
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
48-251 |
6.87e-09 |
|
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 56.71 E-value: 6.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 48 QKVQVMSSGSLALDIALGaGGYPKGRIIEIYGPESSGKTTVA--LHAVAQAQKEGGIA----AFIDAEHALDP----AYA 117
Cdd:TIGR02238 73 KKVLKITTGSQALDGILG-GGIESMSITEVFGEFRCGKTQLShtLCVTAQLPREMGGGngkvAYIDTEGTFRPdrirAIA 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 118 QALGVN----IDELLLSQPDSGEQGLEIAGKL---IDSGAVDLVVIDSVAALVpraEID----GDIGDSHVGLqARMMSQ 186
Cdd:TIGR02238 152 ERFGVDpdavLDNILYARAYTSEHQMELLDYLaakFSEEPFRLLIVDSIMALF---RVDfsgrGELSERQQKL-AQMLSR 227
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489131013 187 aMRKLSASINktktIAIFI-NQLREKVG--IMF-GNPETTPGGRALKFYASVRLDVRgntqiKGTGDEK 251
Cdd:TIGR02238 228 -LNKISEEFN----VAVFVtNQVQADPGatMTFiADPKKPIGGHVLAHASTTRILLR-----KGRGEER 286
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
71-239 |
6.94e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 54.30 E-value: 6.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 71 KGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSqpDSGEQGLEIAGKLIDSGA 150
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS--GSGELRLRLALALARKLK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 151 VDLVVIDSVAALVPRaeidgdigdshVGLQARMMSQAMRKLSASINKTKTIAIFINqlrekvgimfgNPETTPGGRALKF 230
Cdd:smart00382 79 PDVLILDEITSLLDA-----------EQEALLLLLEELRLLLLLKSEKNLTVILTT-----------NDEKDLGPALLRR 136
|
....*....
gi 489131013 231 YASVRLDVR 239
Cdd:smart00382 137 RFDRRIVLL 145
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
53-211 |
1.95e-08 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 54.19 E-value: 1.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 53 MSSGSLALDIALGaGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVN------IDE 126
Cdd:cd01124 1 VKTGIPGLDELLG-GGIPKGSVTLLTGGPGTGKTLFGLQFLYAGAKNGEPGLFFTFEESPERLLRNAKSFGwdfdemEDE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 127 LLLSQPD---------SGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRAEidgdigdshvglQARMMSQAMRKLSASINK 197
Cdd:cd01124 80 GKLIIVDappteagrfSLDELLSRILSIIKSFKAKRVVIDSLSGLRRAKE------------DQMRARRIVIALLNELRA 147
|
170
....*....|....
gi 489131013 198 TKTIAIFINQLREK 211
Cdd:cd01124 148 AGVTTIFTSEMRSF 161
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
48-249 |
2.51e-08 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 54.88 E-value: 2.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 48 QKVQVMSSGSLALDIALGaGGYPKGRIIEIYGPESSGKTTVAlHAVA---QAQKE----GGIAAFIDAEHALDP----AY 116
Cdd:PRK04301 79 KNVGKITTGSKELDELLG-GGIETQSITEFYGEFGSGKTQIC-HQLAvnvQLPEEkgglEGKAVYIDTEGTFRPerieQM 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 117 AQALGVNIDELL-----LSQPDSGEQGL--EIAGKLIDSG-AVDLVVIDSVAALVpRAEIDG--DIGDSHVGLqARMMSQ 186
Cdd:PRK04301 157 AEALGLDPDEVLdnihvARAYNSDHQMLlaEKAEELIKEGeNIKLVIVDSLTAHF-RAEYVGrgNLAERQQKL-NKHLHD 234
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489131013 187 AMRklsasINKTKTIAIFI-NQLREKVGIMFGNPETTPGGRALKFYASVRLDVRgntqiKGTGD 249
Cdd:PRK04301 235 LLR-----LADLYNAAVVVtNQVMARPDAFFGDPTQPIGGHILGHTATFRIYLR-----KSKGN 288
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
53-251 |
3.48e-08 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 53.69 E-value: 3.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 53 MSSGSLALDIALGaGGYPKGRIIEIYGPESSGKTTVA--LHAVAQAQKE----GGIAAFIDAEHALDP----AYAQALGV 122
Cdd:cd01123 1 ITTGSKELDKLLG-GGIETGSITEMFGEFRTGKTQLChtLAVTCQLPIDrgggEGKAIYIDTEGTFRPerlrAIAQRFGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 123 NIDELLLS-------QPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVpRAEID--GDIGDSHVGLqARMMSqAMRKLSA 193
Cdd:cd01123 80 DPDDVLDNvayarafNSDHQTQLLDQAAAMMVESRFKLLIVDSATALY-RTDYSgrGELSARQMHL-AKFLR-MLQRLAD 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489131013 194 SINktktIAIFI-NQLREKVG---IMFGNPETTPGGRALKFYASVRLDVRgntqiKGTGDEK 251
Cdd:cd01123 157 EFG----VAVVVtNQVVAQVDgamMFAADPKKPIGGNILAHASTTRLYLR-----KGRGETR 209
|
|
| XRCC3 |
cd19491 |
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
60-213 |
7.16e-08 |
|
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 53.06 E-value: 7.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 60 LDIALGaGGYPKGRIIEIYGPESSGKTTVALHAVAQAQ---KEGGI---AAFIDAEHAL----------------DPAYA 117
Cdd:cd19491 1 LDELLG-GGIPVGGITEIAGESGAGKTQLCLQLALTVQlprELGGLgggAVYICTESSFpskrlqqlasslpkryHLEKA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 118 QALGVNIDELLLSQPDSGEQGL-EIAGKLIDSGAVDLVVIDSVAALVpRAEIDGDIGDShvGLQARMMSQAMRKLSASIN 196
Cdd:cd19491 80 KNFLDNIFVEHVADLETLEHCLnYQLPALLERGPIRLVVIDSIAALF-RSEFDTSRSDL--VERAKYLRRLADHLKRLAD 156
|
170
....*....|....*..
gi 489131013 197 KTKTIAIFINQLREKVG 213
Cdd:cd19491 157 KYNLAVVVVNQVTDRFD 173
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
72-230 |
3.89e-07 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 50.42 E-value: 3.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 72 GRIIEIYGPESSGKTTVALHAVAQA---QKEGGIAA--------FIDAEHALD-----------------PAYAQALGVN 123
Cdd:cd19490 1 GDVIEITGPSGSGKTELLYHLAARCilpSSWGGVPLggleaavvFIDTDGRFDilrlrsileariraaiqAANSSDDEED 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 124 IDELLLS--------QPDSGEQ---GLEIAGKLIDS----GAVDLVVIDSVAALVPRAEIDGDIGDSHVGLQARMMSQAM 188
Cdd:cd19490 81 VEEIAREclqrlhifRCHSSLQllaTLLSLENYLLSlsanPELGLLLIDSISAFYWQDRFSAELARAAPLLQEAALRAIL 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 489131013 189 RKLSASINKTKTIAIF----INQLREKVGIMFGNPETTPGGRALKF 230
Cdd:cd19490 161 RELRRLRRRFQLVVIAtkqaLFPGKSASTDNPAANNAVSKASAPSH 206
|
|
| Rad51 |
cd19513 |
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
53-251 |
4.48e-07 |
|
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.
Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 50.39 E-value: 4.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 53 MSSGSLALDIALGaGGYPKGRIIEIYGPESSGKT----TVALHA---VAQAQKEGGiAAFIDAEHALDP----AYAQALG 121
Cdd:cd19513 1 ITTGSKELDKLLG-GGIETGSITELFGEFRTGKTqlchTLAVTCqlpIDQGGGEGK-ALYIDTEGTFRPerllAIAERYG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 122 VNIDELLLS-------QPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVpRAEIDGDiGDshvgLQARMM--SQAMRKLs 192
Cdd:cd19513 79 LNGEDVLDNvayarayNTDHQMQLLIQASAMMAESRYALLIVDSATALY-RTDYSGR-GE----LSARQMhlAKFLRML- 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489131013 193 ASINKTKTIAIFI-NQLREKV--GIMFGNPETTP-GGRALKFYASVRLDVRgntqiKGTGDEK 251
Cdd:cd19513 152 QRLADEFGVAVVItNQVVAQVdgAAMFAGDPKKPiGGNIMAHASTTRLYLR-----KGRGETR 209
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
45-251 |
5.22e-07 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 51.15 E-value: 5.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 45 RAEQKVQVMSSGSLALDIALGaGGYPKGRIIEIYGPESSGKTTVA--LHAVAQAQKE----GGIAAFIDAEHALDP---- 114
Cdd:PTZ00035 92 EARKNIIRITTGSTQLDKLLG-GGIETGSITELFGEFRTGKTQLChtLCVTCQLPIEqgggEGKVLYIDTEGTFRPeriv 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 115 AYAQALGVNIDELL----LSQPDSGEQGLE----IAGKLIDSGAVdLVVIDSVAALVpRAEIDG--DIGDSHVGLqARMM 184
Cdd:PTZ00035 171 QIAERFGLDPEDVLdniaYARAYNHEHQMQllsqAAAKMAEERFA-LLIVDSATALF-RVDYSGrgELAERQQHL-GKFL 247
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489131013 185 SqAMRKLSASINktktIAIFI-NQLREKVG---IMFGNPETTPGGRALKFYASVRLDVRgntqiKGTGDEK 251
Cdd:PTZ00035 248 R-ALQKLADEFN----VAVVItNQVMADVDgasMFVADPKKPIGGHIIAHASTTRLSLR-----KGRGEQR 308
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
6-251 |
7.57e-07 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 50.50 E-value: 7.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 6 KKLEEIsKKFGEER-QKALDTALKNIEKDFgKGAIMRLGERAEQkVQVmSSGSLALDIALGaGGYPKGRIIEIYGPESSG 84
Cdd:PLN03186 61 KDLLQI-KGISEAKvEKILEAASKLVPLGF-TTASQLHAQRQEI-IQI-TTGSRELDKILE-GGIETGSITEIYGEFRTG 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 85 KT----TVALHA---VAQAQKEGGiAAFIDAEHALDP----AYAQALGVNIDELL----LSQPDSGEQGLEI---AGKLI 146
Cdd:PLN03186 136 KTqlchTLCVTCqlpLDQGGGEGK-AMYIDTEGTFRPqrliQIAERFGLNGADVLenvaYARAYNTDHQSELlleAASMM 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 147 DSGAVDLVVIDSVAALVpRAEIDGDiGDshvgLQARMMSQA-----MRKLSASINktktIAIFI-NQLREKV--GIMFGN 218
Cdd:PLN03186 215 AETRFALMIVDSATALY-RTEFSGR-GE----LSARQMHLGkflrsLQRLADEFG----VAVVItNQVVAQVdgSAFFAG 284
|
250 260 270
....*....|....*....|....*....|....
gi 489131013 219 PETTP-GGRALKFYASVRLDVRgntqiKGTGDEK 251
Cdd:PLN03186 285 PQLKPiGGNIMAHASTTRLALR-----KGRGENR 313
|
|
| RecA-like_superfamily |
cd01120 |
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 ... |
75-229 |
2.61e-06 |
|
RecA-like_NTPases; RecA-like NTPases. This superfamily includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410865 [Multi-domain] Cd Length: 119 Bit Score: 45.96 E-value: 2.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 75 IEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAehaLDPAYAQALgvnidelllsqpdsgeqgleiagKLIDSGAVDLV 154
Cdd:cd01120 1 ILITGPPGSGKTTLLLQFAEQALLSDEPVIFISF---LDTILEAIE-----------------------DLIEEKKLDII 54
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489131013 155 VIDSVAALVPRAEidgdigdshvGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALK 229
Cdd:cd01120 55 IIDSLSSLARASQ----------GDRSSELLEDLAKLLRAARNTGITVIATIHSDKFDIDRGGSSNDERLLKSLR 119
|
|
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
67-236 |
5.34e-06 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 46.86 E-value: 5.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 67 GGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAA-FIDAEHALDPayaqalgVNIDELLLSQPDSGEQGLEIAGK- 144
Cdd:cd19489 2 GGLRTGEITELVGESSSGKTQLCLTAAANVASRSGQNVlYIDTKSSFSA-------RRLAQILKSRAQDAEEIDKALQRi 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 145 ----------LID----------------SGAVDLVVIDSVAALVprAEIDGdiGDSHVGLQARMMSQA--MRKLSasin 196
Cdd:cd19489 75 rvvrvfdpyeLLDlleelrntlsqqqenlYSRLKLVIIDSLSALI--SPLLG--GSKHSEGHALLASLArlLKKLA---- 146
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 489131013 197 KTKTIAIFINQLREKVGIMFGNPETTPG-GRALKFYASVRL 236
Cdd:cd19489 147 AEYQIAVLVTNLTVRGGDGGQQGSTKPAlGEYWESVPSTRL 187
|
|
| PLN03187 |
PLN03187 |
meiotic recombination protein DMC1 homolog; Provisional |
53-275 |
7.72e-06 |
|
meiotic recombination protein DMC1 homolog; Provisional
Pssm-ID: 215620 [Multi-domain] Cd Length: 344 Bit Score: 47.46 E-value: 7.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 53 MSSGSLALDIALGaGGYPKGRIIEIYGPESSGKTTVAlHAVAQA----QKEGG---IAAFIDAEHALDP----AYAQALG 121
Cdd:PLN03187 108 ITTGSQALDELLG-GGIETRCITEAFGEFRSGKTQLA-HTLCVTtqlpTEMGGgngKVAYIDTEGTFRPdrivPIAERFG 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 122 VN----IDELLLSQPDSGEQG----LEIAGKLIDSgAVDLVVIDSVAALVpraEID----GDIGDSHVGLqARMMSQaMR 189
Cdd:PLN03187 186 MDadavLDNIIYARAYTYEHQynllLGLAAKMAEE-PFRLLIVDSVIALF---RVDftgrGELAERQQKL-AQMLSR-LT 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 190 KLSASINktktIAIFI-NQLREKVG--IMFGNPETTPGGRALKFYASVRLDVRgntqiKGTGDEKdtnvgketKIKVVKn 266
Cdd:PLN03187 260 KIAEEFN----VAVYMtNQVIADPGggMFISDPKKPAGGHVLAHAATIRLMLR-----KGKGEQR--------VCKVFD- 321
|
....*....
gi 489131013 267 kvAPPFKEA 275
Cdd:PLN03187 322 --APNLPEA 328
|
|
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
46-251 |
1.46e-05 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 46.26 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 46 AEQKVQVMSSGSLALDIALGaGGYPKGRIIEIYGPESSGKT----TVALHAVAQAQKEG--GIAAFIDAEHALDP----A 115
Cdd:TIGR02239 71 RRQEVIQLTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTqlchTLAVTCQLPIDQGGgeGKALYIDTEGTFRPerllA 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 116 YAQALGVNIDELLLS-------QPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVpRAEIDGDiGDshvgLQARMMSQA- 187
Cdd:TIGR02239 150 IAERYGLNPEDVLDNvayarayNTDHQLQLLQQAAAMMSESRFALLIVDSATALY-RTDFSGR-GE----LSARQMHLAr 223
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 188 -MRKLSaSINKTKTIAIFI-NQLREKV---GIMFGNPETTP-GGRALKFYASVRLDVRgntqiKGTGDEK 251
Cdd:TIGR02239 224 fLRSLQ-RLADEFGVAVVItNQVVAQVdgaGSMFAGDPKKPiGGNIMAHASTTRLSLR-----KGRGEQR 287
|
|
| ATPase |
pfam06745 |
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
67-210 |
1.52e-05 |
|
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 45.70 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 67 GGYPKGRIIEIYGPESSGKTTVALH-AVAQAQKEGGIAAFIDA-EHALD-PAYAQALGVNIDELL--------------- 128
Cdd:pfam06745 14 GGFPEGRVVLITGGPGTGKTIFGLQfLYNGALKYGEPGVFVTLeEPPEDlRENARSFGWDLEKLEeegklaiidastsgi 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 129 ----LSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVAALVPRaeidgdigdshvgLQARMMSQAMRKLSASINKTKTIAIF 204
Cdd:pfam06745 94 giaeVEDRFDLEELIERLREAIREIGAKRVVIDSITTLFYL-------------LKPAVAREILRRLKRVLKGLGVTAIF 160
|
....*.
gi 489131013 205 INQLRE 210
Cdd:pfam06745 161 TSEKPS 166
|
|
| KaiC_C |
cd19484 |
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most ... |
54-162 |
3.06e-05 |
|
C-terminal domain of Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410892 [Multi-domain] Cd Length: 218 Bit Score: 44.63 E-value: 3.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 54 SSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNID-------- 125
Cdd:cd19484 2 STGIPRLDAMLGGGGFFRGSSILVSGATGTGKTLLAASFADAACRRGERCLYFAFEESPAQLIRNAKSIGIDleqmerkg 81
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 489131013 126 ELLLSQPDSGEQGLE----IAGKLIDSGAVDLVVIDSVAAL 162
Cdd:cd19484 82 LLKIICARPELYGLEdhliIIKSEINEFKPSRVIVDPLSAL 122
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
70-191 |
8.31e-05 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 44.12 E-value: 8.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 70 PKGRIIEIYGPESSGKTTVALH---AVAQAQK------EGGIAAFIDAE---HALDP---AYAQALGVNIDEL-----LL 129
Cdd:COG3598 11 PEGGVTLLAGPPGTGKSFLALQlaaAVAAGGPwlgrrvPPGKVLYLAAEddrGELRRrlkALGADLGLPFADLdgrlrLL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489131013 130 S-----QPDSGEQGLEiagKLIDSGAVDLVVIDSVAALVPraeidgdiGDSHVGLQARMMSQAMRKL 191
Cdd:COG3598 91 SlagdlDDTDDLEALE---RAIEEEGPDLVVIDPLARVFG--------GDENDAEEMRAFLNPLDRL 146
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
27-109 |
1.11e-03 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 40.47 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 27 LKNIEKDFGKGAIMrlgeraeqkvqvmssGSLALDIalgaggyPKGRIIEIYGPESSGKTTVaLHAVAQAQK--EGGIaa 104
Cdd:PRK11432 9 LKNITKRFGSNTVI---------------DNLNLTI-------KQGTMVTLLGPSGCGKTTV-LRLVAGLEKptEGQI-- 63
|
....*
gi 489131013 105 FIDAE 109
Cdd:PRK11432 64 FIDGE 68
|
|
| PRK09302 |
PRK09302 |
circadian clock protein KaiC; Reviewed |
54-162 |
1.73e-03 |
|
circadian clock protein KaiC; Reviewed
Pssm-ID: 236461 [Multi-domain] Cd Length: 509 Bit Score: 40.25 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 54 SSGSLALDIALGaGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNID-------- 125
Cdd:PRK09302 256 SSGVPDLDEMLG-GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDlekmeekg 334
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 489131013 126 --ELLLSQPDSgeQGLE----IAGKLIDSGAVDLVVIDSVAAL 162
Cdd:PRK09302 335 llKIICARPES--YGLEdhliIIKREIEEFKPSRVAIDPLSAL 375
|
|
| RadA_SMS_N |
cd01121 |
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a ... |
40-205 |
4.60e-03 |
|
bacterial RadA DNA repair protein; Sms or bacterial RadA is a DNA repair protein that plays a role in recombination and recombinational repair of DNA damaged by UV radiation, X-rays, and chemical agent and is responsible for the stabilization or processing of branched DNA molecules.
Pssm-ID: 410866 [Multi-domain] Cd Length: 268 Bit Score: 38.28 E-value: 4.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 40 MRLGERAEQKVQVMSSGSLALDIALGaGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDP--AYA 117
Cdd:cd01121 51 LPLSDVEAEEEERISTGIGELDRVLG-GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAQRGGKVLYVSGEESLSQikLRA 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489131013 118 QALGVNIDELLLSQpdsgEQGLEIAGKLIDSGAVDLVVIDSVAALVpRAEIDGDIGDShvgLQARMMSQAMRKLSasinK 197
Cdd:cd01121 130 ERLGLGSDNLYLLA----ETNLEAILAEIEELKPSLVVIDSIQTVY-SPELTSSPGSV---SQVRECAAELLRLA----K 197
|
....*...
gi 489131013 198 TKTIAIFI 205
Cdd:cd01121 198 ETGIPVFL 205
|
|
| |
