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Conserved domains on  [gi|489145671|ref|WP_003055421|]
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MULTISPECIES: HAD family hydrolase [Streptococcus]

Protein Classification

HAD family hydrolase( domain architecture ID 11436852)

haloacid dehalogenase (HAD) family hydrolase uses a nucleophilic aspartate in the phosphoryl transfer reaction; the HAD family includes phosphoesterases, ATPases, phosphonatases, dehalogenases, and sugar phosphomutases acting on a remarkably diverse set of substrates

CATH:  3.30.1240.10
EC:  3.-.-.-
Gene Ontology:  GO:0016787

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
YigB COG1011
FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily ...
2-232 3.32e-49

FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis) [Coenzyme transport and metabolism];


:

Pssm-ID: 440635 [Multi-domain]  Cd Length: 220  Bit Score: 162.89  E-value: 3.32e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   2 ITAIVFDVDDTIYDQQAPYRIAMEKCFPDF-DMSVMNQAYIRFRHYSDVGFPRVMAGEWTTEYFRfwrcKETLLEFGYRE 80
Cdd:COG1011    1 IKAVLFDLDGTLLDFDPVIAEALRALAERLgLLDEAEELAEAYRAIEYALWRRYERGEITFAELL----RRLLEELGLDL 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  81 IDEAagvhFQEVYEHELENITMLDEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkRVIVSQATGFQKP 160
Cdd:COG1011   77 AEEL----AEAFLAALPELVEPYPDALELLEALKARGYRLALLTNGSAELQEAKLRRLGLDDLFD--AVVSSEEVGVRKP 150
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489145671 161 EKEIFNLAAEQFDMNPQTTLYVGDSYDNDIMGAFNGGWHSMWFNHRGRQLKPRTKPvyDVAIDNFEQLFGAV 232
Cdd:COG1011  151 DPEIFELALERLGVPPEEALFVGDSPETDVAGARAAGMRTVWVNRSGEPAPAEPRP--DYVISDLAELLELL 220
 
Name Accession Description Interval E-value
YigB COG1011
FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily ...
2-232 3.32e-49

FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis) [Coenzyme transport and metabolism];


Pssm-ID: 440635 [Multi-domain]  Cd Length: 220  Bit Score: 162.89  E-value: 3.32e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   2 ITAIVFDVDDTIYDQQAPYRIAMEKCFPDF-DMSVMNQAYIRFRHYSDVGFPRVMAGEWTTEYFRfwrcKETLLEFGYRE 80
Cdd:COG1011    1 IKAVLFDLDGTLLDFDPVIAEALRALAERLgLLDEAEELAEAYRAIEYALWRRYERGEITFAELL----RRLLEELGLDL 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  81 IDEAagvhFQEVYEHELENITMLDEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkRVIVSQATGFQKP 160
Cdd:COG1011   77 AEEL----AEAFLAALPELVEPYPDALELLEALKARGYRLALLTNGSAELQEAKLRRLGLDDLFD--AVVSSEEVGVRKP 150
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489145671 161 EKEIFNLAAEQFDMNPQTTLYVGDSYDNDIMGAFNGGWHSMWFNHRGRQLKPRTKPvyDVAIDNFEQLFGAV 232
Cdd:COG1011  151 DPEIFELALERLGVPPEEALFVGDSPETDVAGARAAGMRTVWVNRSGEPAPAEPRP--DYVISDLAELLELL 220
HAD_Neu5Ac-Pase_like cd04305
human N-acetylneuraminate-9-phosphate phosphatase, Escherichia coli house-cleaning phosphatase ...
101-204 2.78e-38

human N-acetylneuraminate-9-phosphate phosphatase, Escherichia coli house-cleaning phosphatase YjjG, and related phosphatases; N-acetylneuraminate-9- phosphatase (Neu5Ac-9-Pase; E.C. 3.1.3.29) catalyzes the dephosphorylation of N-acylneuraminate 9-phosphate during the synthesis of N-acetylneuraminate; Escherichia coli nucleotide phosphatase YjjG has a broad pyrimidine nucleotide activity spectrum and functions as an in vivo house-cleaning phosphatase for noncanonical pyrimidine nucleotides. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319800 [Multi-domain]  Cd Length: 109  Bit Score: 131.13  E-value: 2.78e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671 101 TMLDEMRMTLDFLKsKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkRVIVSQATGFQKPEKEIFNLAAEQFDMNPQTTL 180
Cdd:cd04305    9 TLLPGAKELLEELK-KGYKLGIITNGPTEVQWEKLEQLGIHKYFD--HIVISEEVGVQKPNPEIFDYALNQLGVKPEETL 85
                         90       100
                 ....*....|....*....|....
gi 489145671 181 YVGDSYDNDIMGAFNGGWHSMWFN 204
Cdd:cd04305   86 MVGDSLESDILGAKNAGIKTVWFN 109
HAD-SF-IA-v1 TIGR01549
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or ...
4-197 5.14e-29

haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions.The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that representing it with a single model is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms: (1) hhhhsDxxx(x)(D/E), (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 1 (this model) is found in the enzymes phosphoglycolate phosphatase (TIGR01449) and enolase-phosphatase. These three variant models (see also TIGR01493 and TIGR01509) were created withthe knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly relatedHAD subfamilies caused by an overly broad single model. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273686 [Multi-domain]  Cd Length: 164  Bit Score: 108.64  E-value: 5.14e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671    4 AIVFDVDDTIYDQQAPYRIAMEKCFPDFDMsvmnqAYIRFRHYSDVGFprvMAGEWTTEYFRFWRckETLLEFGYREIDE 83
Cdd:TIGR01549   1 AILFDIDGTLVDIKFAIRRAFPQTFEEFGL-----DPASFKALKQAGG---LAEEEWYRIATSAL--EELQGRFWSEYDA 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   84 aagvhfqevyeHELENITMLDemrmTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkRVIVSQATGfQKPEKE 163
Cdd:TIGR01549  71 -----------EEAYIRGAAD----LLARLKSAGIKLGIISNGSLRAQKLLLRLFGLGDYFE--LILVSDEPG-SKPEPE 132
                         170       180       190
                  ....*....|....*....|....*....|....
gi 489145671  164 IFNLAAEQFDMNPQtTLYVGDSyDNDIMGAFNGG 197
Cdd:TIGR01549 133 IFLAALESLGVPPE-VLHVGDN-LNDIEGARNAG 164
Hydrolase pfam00702
haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha ...
2-197 5.66e-23

haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha/beta hydrolase family (pfam00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Swiss:P24069. The rest of the fold is composed of the core alpha/beta domain. Those members with the characteriztic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria.


Pssm-ID: 459910 [Multi-domain]  Cd Length: 191  Bit Score: 93.42  E-value: 5.66e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671    2 ITAIVFDVDDTIYDQQAPYRIAMEKCFPDFDMSVMNQAYIRFRHYSDVGFP-RVMAGEWtteyfRFWRCKETLLEFGYRE 80
Cdd:pfam00702   1 IKAVVFDLDGTLTDGEPVVTEAIAELASEHPLAKAIVAAAEDLPIPVEDFTaRLLLGKR-----DWLEELDILRGLVETL 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   81 IDEAAGVHFQEVYEHEL--ENITMLDEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkRVIVSQATGFQ 158
Cdd:pfam00702  76 EAEGLTVVLVELLGVIAlaDELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFD--VVISGDDVGVG 153
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 489145671  159 KPEKEIFNLAAEQFDMNPQTTLYVGDSYdNDIMGAFNGG 197
Cdd:pfam00702 154 KPKPEIYLAALERLGVKPEEVLMVGDGV-NDIPAAKAAG 191
PRK09449 PRK09449
dUMP phosphatase; Provisional
101-221 1.57e-21

dUMP phosphatase; Provisional


Pssm-ID: 181865 [Multi-domain]  Cd Length: 224  Bit Score: 90.35  E-value: 1.57e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671 101 TMLDEMRMTLDFLKSKnVPMGIITNGPTEHQLKKVRKLGLYDYIDPkrVIVSQATGFQKPEKEIFNLAAEQFDmNPQTT- 179
Cdd:PRK09449  95 TPLPGAVELLNALRGK-VKMGIITNGFTELQQVRLERTGLRDYFDL--LVISEQVGVAKPDVAIFDYALEQMG-NPDRSr 170
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 489145671 180 -LYVGDSYDNDIMGAFNGGWHSMWFNHRGRQLKPRTKPVYDVA 221
Cdd:PRK09449 171 vLMVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQVS 213
 
Name Accession Description Interval E-value
YigB COG1011
FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily ...
2-232 3.32e-49

FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis) [Coenzyme transport and metabolism];


Pssm-ID: 440635 [Multi-domain]  Cd Length: 220  Bit Score: 162.89  E-value: 3.32e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   2 ITAIVFDVDDTIYDQQAPYRIAMEKCFPDF-DMSVMNQAYIRFRHYSDVGFPRVMAGEWTTEYFRfwrcKETLLEFGYRE 80
Cdd:COG1011    1 IKAVLFDLDGTLLDFDPVIAEALRALAERLgLLDEAEELAEAYRAIEYALWRRYERGEITFAELL----RRLLEELGLDL 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  81 IDEAagvhFQEVYEHELENITMLDEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkRVIVSQATGFQKP 160
Cdd:COG1011   77 AEEL----AEAFLAALPELVEPYPDALELLEALKARGYRLALLTNGSAELQEAKLRRLGLDDLFD--AVVSSEEVGVRKP 150
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489145671 161 EKEIFNLAAEQFDMNPQTTLYVGDSYDNDIMGAFNGGWHSMWFNHRGRQLKPRTKPvyDVAIDNFEQLFGAV 232
Cdd:COG1011  151 DPEIFELALERLGVPPEEALFVGDSPETDVAGARAAGMRTVWVNRSGEPAPAEPRP--DYVISDLAELLELL 220
HAD_Neu5Ac-Pase_like cd04305
human N-acetylneuraminate-9-phosphate phosphatase, Escherichia coli house-cleaning phosphatase ...
101-204 2.78e-38

human N-acetylneuraminate-9-phosphate phosphatase, Escherichia coli house-cleaning phosphatase YjjG, and related phosphatases; N-acetylneuraminate-9- phosphatase (Neu5Ac-9-Pase; E.C. 3.1.3.29) catalyzes the dephosphorylation of N-acylneuraminate 9-phosphate during the synthesis of N-acetylneuraminate; Escherichia coli nucleotide phosphatase YjjG has a broad pyrimidine nucleotide activity spectrum and functions as an in vivo house-cleaning phosphatase for noncanonical pyrimidine nucleotides. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319800 [Multi-domain]  Cd Length: 109  Bit Score: 131.13  E-value: 2.78e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671 101 TMLDEMRMTLDFLKsKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkRVIVSQATGFQKPEKEIFNLAAEQFDMNPQTTL 180
Cdd:cd04305    9 TLLPGAKELLEELK-KGYKLGIITNGPTEVQWEKLEQLGIHKYFD--HIVISEEVGVQKPNPEIFDYALNQLGVKPEETL 85
                         90       100
                 ....*....|....*....|....
gi 489145671 181 YVGDSYDNDIMGAFNGGWHSMWFN 204
Cdd:cd04305   86 MVGDSLESDILGAKNAGIKTVWFN 109
HAD-SF-IA-v1 TIGR01549
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or ...
4-197 5.14e-29

haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions.The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that representing it with a single model is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms: (1) hhhhsDxxx(x)(D/E), (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 1 (this model) is found in the enzymes phosphoglycolate phosphatase (TIGR01449) and enolase-phosphatase. These three variant models (see also TIGR01493 and TIGR01509) were created withthe knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly relatedHAD subfamilies caused by an overly broad single model. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273686 [Multi-domain]  Cd Length: 164  Bit Score: 108.64  E-value: 5.14e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671    4 AIVFDVDDTIYDQQAPYRIAMEKCFPDFDMsvmnqAYIRFRHYSDVGFprvMAGEWTTEYFRFWRckETLLEFGYREIDE 83
Cdd:TIGR01549   1 AILFDIDGTLVDIKFAIRRAFPQTFEEFGL-----DPASFKALKQAGG---LAEEEWYRIATSAL--EELQGRFWSEYDA 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   84 aagvhfqevyeHELENITMLDemrmTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkRVIVSQATGfQKPEKE 163
Cdd:TIGR01549  71 -----------EEAYIRGAAD----LLARLKSAGIKLGIISNGSLRAQKLLLRLFGLGDYFE--LILVSDEPG-SKPEPE 132
                         170       180       190
                  ....*....|....*....|....*....|....
gi 489145671  164 IFNLAAEQFDMNPQtTLYVGDSyDNDIMGAFNGG 197
Cdd:TIGR01549 133 IFLAALESLGVPPE-VLHVGDN-LNDIEGARNAG 164
YjjG/YfnB TIGR02254
noncanonical pyrimidine nucleotidase, YjjG family; This HAD superfamily includes including ...
5-220 7.82e-27

noncanonical pyrimidine nucleotidase, YjjG family; This HAD superfamily includes including YjjG from E. coli and YfnB from B. subtilis. YjjG has been shown to act as a house-cleaning enzyme, cleaving nucleotides with non-canonical nucleotide bases. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).


Pssm-ID: 162788 [Multi-domain]  Cd Length: 224  Bit Score: 104.88  E-value: 7.82e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671    5 IVFDVDDTIYDQQAPYRIAMEKCFPDFDMSVMNQAYIRFRH-----YSDVGFPRVMAGEWTTEYFRFWrcketLLEFGYr 79
Cdd:TIGR02254   4 LLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDMFAQYKEinqglWRAYEEGKITKDEVVNTRFSAL-----LKEYNT- 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   80 EIDEAAgvhFQEVYEHELENIT-MLDEMRMTLDFLKSKnVPMGIITNGPTEHQLKKVRKLGLYDYIDpkRVIVSQATGFQ 158
Cdd:TIGR02254  78 EADEAL---LNQKYLRFLEEGHqLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFD--DIFVSEDAGIQ 151
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489145671  159 KPEKEIFNLAAEQFDMNPQT-TLYVGDSYDNDIMGAFNGGWHSMWFNHRGRQLKPRTKPVYDV 220
Cdd:TIGR02254 152 KPDKEIFNYALERMPKFSKEeVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEI 214
Gph COG0546
Phosphoglycolate phosphatase, HAD superfamily [Energy production and conversion];
2-233 3.21e-25

Phosphoglycolate phosphatase, HAD superfamily [Energy production and conversion];


Pssm-ID: 440312 [Multi-domain]  Cd Length: 214  Bit Score: 100.00  E-value: 3.21e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   2 ITAIVFDVDDTIYDQQAPYRIAMEKCFPDFDMSVMNQAYIR-FRHYSDVGFPRVMAGEWTTEYFrfwrcketllefgyre 80
Cdd:COG0546    1 IKLVLFDLDGTLVDSAPDIAAALNEALAELGLPPLDLEELRaLIGLGLRELLRRLLGEDPDEEL---------------- 64
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  81 idEAAGVHFQEVY-EHELENITMLDEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkRVIVSQATGFQK 159
Cdd:COG0546   65 --EELLARFRELYeEELLDETRLFPGVRELLEALKARGIKLAVVTNKPREFAERLLEALGLDDYFD--AIVGGDDVPPAK 140
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489145671 160 PEKEIFNLAAEQFDMNPQTTLYVGDSYdNDIMGAFNGGWHSM---WFNHRGRQLKpRTKPvyDVAIDNFEQLFGAVK 233
Cdd:COG0546  141 PKPEPLLEALERLGLDPEEVLMVGDSP-HDIEAARAAGVPFIgvtWGYGSAEELE-AAGA--DYVIDSLAELLALLA 213
Hydrolase pfam00702
haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha ...
2-197 5.66e-23

haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha/beta hydrolase family (pfam00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Swiss:P24069. The rest of the fold is composed of the core alpha/beta domain. Those members with the characteriztic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria.


Pssm-ID: 459910 [Multi-domain]  Cd Length: 191  Bit Score: 93.42  E-value: 5.66e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671    2 ITAIVFDVDDTIYDQQAPYRIAMEKCFPDFDMSVMNQAYIRFRHYSDVGFP-RVMAGEWtteyfRFWRCKETLLEFGYRE 80
Cdd:pfam00702   1 IKAVVFDLDGTLTDGEPVVTEAIAELASEHPLAKAIVAAAEDLPIPVEDFTaRLLLGKR-----DWLEELDILRGLVETL 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   81 IDEAAGVHFQEVYEHEL--ENITMLDEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkRVIVSQATGFQ 158
Cdd:pfam00702  76 EAEGLTVVLVELLGVIAlaDELKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFD--VVISGDDVGVG 153
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 489145671  159 KPEKEIFNLAAEQFDMNPQTTLYVGDSYdNDIMGAFNGG 197
Cdd:pfam00702 154 KPKPEIYLAALERLGVKPEEVLMVGDGV-NDIPAAKAAG 191
DREG-2 TIGR02252
REG-2-like, HAD superfamily (subfamily IA) hydrolase; This family of proteins includes ...
4-202 1.27e-22

REG-2-like, HAD superfamily (subfamily IA) hydrolase; This family of proteins includes uncharacterized sequences from eukaryotes, cyanobacteria and Leptospira as well as the DREG-2 protein from Drosophila melanogaster which has been identified as a rhythmically (diurnally) regulated gene. This family is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called 'capping domain', or the absence of such a domain. This family is a member of subfamily 1A in which the cap domain consists of a predicted alpha helical bundle found in between the first and second catalytic motifs. A distinctive feature of this family is a conserved tandem pair of tryptophan residues in the cap domain. The most divergent sequences included within the scope of this model are from plants and have "FW" at this position instead. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.


Pssm-ID: 274056 [Multi-domain]  Cd Length: 203  Bit Score: 92.73  E-value: 1.27e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671    4 AIVFDVDDTIYDQQAP----YRIAMEK----CFPDFDMSVMNQAYIRFRHYSDvGFPRVMAGEWtteyFRFWRckeTLLE 75
Cdd:TIGR02252   2 LITFDAVGTLLALKEPvgevYCEIARKygveVSPDELEQAFRKAFKAMSEAFP-NFGFSSGLTP----QQWWQ---KLVR 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   76 --FGYREIDEAAGVH--FQEVYEH--ELENITMLDEMRMTLDFLKSKNVPMGIITNgpTEHQLKKV-RKLGLYDYIDPkr 148
Cdd:TIGR02252  74 dtFGRAGVPDPESFEkiFEELYSYfaTPEPWQVYPDAIKLLKDLRERGLILGVISN--FDSRLRGLlEALGLLEYFDF-- 149
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 489145671  149 VIVSQATGFQKPEKEIFNLAAEQFDMNPQTTLYVGDSYDNDIMGAFNGGWHSMW 202
Cdd:TIGR02252 150 VVTSYEVGAEKPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203
HAD_dREG-2_like cd16415
uncharacterized family of the haloacid dehalogenase-like superfamily, similar to ...
109-229 2.32e-22

uncharacterized family of the haloacid dehalogenase-like superfamily, similar to uncharacterized Drosophila melanogaster rhythmically expressed gene 2 protein and human haloacid dehalogenase-like hydrolase domain-containing protein 3; The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319852 [Multi-domain]  Cd Length: 128  Bit Score: 90.04  E-value: 2.32e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671 109 TLDFLKSKNVPMGIITNgpTEHQLKKV-RKLGLYDYIDpkRVIVSQATGFQKPEKEIFNLAAEQFDMNPQTTLYVGDSYD 187
Cdd:cd16415   15 TLKDLKEKGLKLAVVSN--FDRRLRELlEALGLDDYFD--FVVFSYEVGYEKPDPRIFQKALERLGVSPEEALHVGDDLK 90
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 489145671 188 NDIMGAFNGGWHSMWFNhrgrqlKPRTKPVYDVAIDNFEQLF 229
Cdd:cd16415   91 NDYLGARAVGWHALLVD------REGALHELPSLANLLERLL 126
CTE7 TIGR02253
HAD superfamily (subfamily IA) hydrolase, TIGR02253; This family of sequences from archaea and ...
1-228 1.37e-21

HAD superfamily (subfamily IA) hydrolase, TIGR02253; This family of sequences from archaea and metazoans includes the human uncharacterized protein CTE7. Pyrococcus species appear to have three different forms of this enzyme, so it is unclear whether all members of this family have the same function. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).


Pssm-ID: 274057 [Multi-domain]  Cd Length: 221  Bit Score: 90.54  E-value: 1.37e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671    1 MITAIVFDVDDTIYDQQAPYRIAMEKC---------FPDFDmsvmnQAYIRFrhysdVGFPRVMAGEWTTeYFRFWRcKE 71
Cdd:TIGR02253   1 MIKAIFFDLDDTLIDTSGLAEKARRNAievlieaglNVDFE-----EAYEEL-----LKLIKEYGSNYPT-HFDYLI-RR 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   72 TLLEFGYREIDEAAGVHFQEVYEHelenITMLDEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkRVIV 151
Cdd:TIGR02253  69 LWEEYNPKLVAAFVYAYHKLKFAY----LRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFD--AVIT 142
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  152 SQATGFQKPEKEIFNLAAEQFDMNPQTTLYVGDSYDNDIMGAFNGGWHSMWFN---HRGRQLKPRTKPvyDVAIDNFEQL 228
Cdd:TIGR02253 143 SEEEGVEKPHPKIFYAALKRLGVKPEEAVMVGDRLDKDIKGAKNAGMKTVWINqgkSSKMEDDVYPYP--DYEISSLREL 220
PRK09449 PRK09449
dUMP phosphatase; Provisional
101-221 1.57e-21

dUMP phosphatase; Provisional


Pssm-ID: 181865 [Multi-domain]  Cd Length: 224  Bit Score: 90.35  E-value: 1.57e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671 101 TMLDEMRMTLDFLKSKnVPMGIITNGPTEHQLKKVRKLGLYDYIDPkrVIVSQATGFQKPEKEIFNLAAEQFDmNPQTT- 179
Cdd:PRK09449  95 TPLPGAVELLNALRGK-VKMGIITNGFTELQQVRLERTGLRDYFDL--LVISEQVGVAKPDVAIFDYALEQMG-NPDRSr 170
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 489145671 180 -LYVGDSYDNDIMGAFNGGWHSMWFNHRGRQLKPRTKPVYDVA 221
Cdd:PRK09449 171 vLMVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQVS 213
HAD_2 pfam13419
Haloacid dehalogenase-like hydrolase;
5-197 2.45e-19

Haloacid dehalogenase-like hydrolase;


Pssm-ID: 404323 [Multi-domain]  Cd Length: 178  Bit Score: 83.40  E-value: 2.45e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671    5 IVFDVDDTIYDQQAPYRIAMEKCFPDFDMSVMNQAYIRFRhysdVGFPRVMAGEWTTEYFRFWRCKETLLefgyreidea 84
Cdd:pfam13419   1 IIFDFDGTLLDTEELIIKSFNYLLEEFGYGELSEEEILKF----IGLPLREIFRYLGVSEDEEEKIEFYL---------- 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   85 agvhfQEVYEHEL-ENITMLDEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkrVIVSQATGFQ-KPEK 162
Cdd:pfam13419  67 -----RKYNEELHdKLVKPYPGIKELLEELKEQGYKLGIVTSKSRENVEEFLKQLGLEDYFD---VIVGGDDVEGkKPDP 138
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 489145671  163 EIFNLAAEQFDMNPQTTLYVGDSYdNDIMGAFNGG 197
Cdd:pfam13419 139 DPILKALEQLGLKPEEVIYVGDSP-RDIEAAKNAG 172
HAD-SF-IA-v3 TIGR01509
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; ...
4-202 2.39e-16

haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that representing it with a single model is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms: (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 3 (this model) is found in the enzymes beta-phosphoglucomutase (TIGR01990) and deoxyglucose-6-phosphatase, while many other enzymes of subfamily IA exhibit this variant as well as variant 1 (TIGR01549). These three variant models were created with the knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly related HAD subfamilies caused by an overly broad single model. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273662 [Multi-domain]  Cd Length: 178  Bit Score: 75.15  E-value: 2.39e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671    4 AIVFDVDDTIYDqqapyriamekcfPDFDMSVMNQAYI--RFRHYSDVGFPRVMAGEWTTEYFRFWRCKETLLEFGYREi 81
Cdd:TIGR01509   1 AILFDLDGVLVD-------------TEFAIAKLINREElgLVPDELGVSAVGRLELALRRFKAQYGRTISPEDAQLLYK- 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   82 deaagvHFQEVYEHELENITMLDEMRMTLDFLKSKNVPMGIITNGPTEHQLKKvRKLGLYDYIDpkRVIVSQATGFQKPE 161
Cdd:TIGR01509  67 ------QLFYEQIEEEAKLKPLPGVRALLEALRARGKKLALLTNSPRAHKLVL-ALLGLRDLFD--VVIDSSDVGLGKPD 137
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 489145671  162 KEIFNLAAEQFDMNPQTTLYVGDSYDNdIMGAFNGGWHSMW 202
Cdd:TIGR01509 138 PDIYLQALKALGLEPSECVFVDDSPAG-IEAAKAAGMHTVG 177
HAD_sEH-N_like cd02603
N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX ...
2-188 4.31e-16

N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive; This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319790 [Multi-domain]  Cd Length: 195  Bit Score: 75.07  E-value: 4.31e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   2 ITAIVFDVDDTIYDqqapyrIAMEKCFPDFDMSVMNQAYIRFRHYSDVG-FPRVMAGEWTTEyfRFWR-CKETLLEFGYR 79
Cdd:cd02603    1 IRAVLFDFGGVLID------PDPAAAVARFEALTGEPSEFVLDTEGLAGaFLELERGRITEE--EFWEeLREELGRPLSA 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  80 EIDEAAGVHFQEVYEHelenitMLDEMRMtldfLKSKNVPMGIITNGPTEHqlkKVRKLGLYDYID--PKRVIVSQATGF 157
Cdd:cd02603   73 ELFEELVLAAVDPNPE------MLDLLEA----LRAKGYKVYLLSNTWPDH---FKFQLELLPRRGdlFDGVVESCRLGV 139
                        170       180       190
                 ....*....|....*....|....*....|.
gi 489145671 158 QKPEKEIFNLAAEQFDMNPQTTLYVGDSYDN 188
Cdd:cd02603  140 RKPDPEIYQLALERLGVKPEEVLFIDDREEN 170
YcjU COG0637
Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];
1-197 1.09e-14

Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];


Pssm-ID: 440402 [Multi-domain]  Cd Length: 208  Bit Score: 71.39  E-value: 1.09e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   1 MITAIVFDVDDTIYDqqapyriamekcfpdfDMSVMNQAYIR-FRHYsdvGFPrvmageWTTEYFR------FWRCKETL 73
Cdd:COG0637    1 MIKAVIFDMDGTLVD----------------SEPLHARAWREaFAEL---GID------LTEEEYRrlmgrsREDILRYL 55
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  74 LEFGYREIDEAAGV-----HFQEVYEHEleNITMLDEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkr 148
Cdd:COG0637   56 LEEYGLDLPEEELAarkeeLYRELLAEE--GLPLIPGVVELLEALKEAGIKIAVATSSPRENAEAVLEAAGLLDYFD--- 130
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 489145671 149 VIVsqaTGFQ----KPEKEIFNLAAEQFDMNPQTTLYVGDSyDNDIMGAFNGG 197
Cdd:COG0637  131 VIV---TGDDvargKPDPDIYLLAAERLGVDPEECVVFEDS-PAGIRAAKAAG 179
HAD_like cd01427
Haloacid dehalogenase-like hydrolases; The haloacid dehalogenase-like (HAD) superfamily ...
109-203 1.09e-14

Haloacid dehalogenase-like hydrolases; The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others. This superfamily includes a variety of enzymes that catalyze the cleavage of substrate C-Cl, P-C, and P-OP bonds via nucleophilic substitution pathways. All of which use a nucleophilic aspartate in their phosphoryl transfer reaction. They catalyze nucleophilic substitution reactions at phosphorus or carbon centers, using a conserved Asp carboxylate in covalent catalysis. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319763 [Multi-domain]  Cd Length: 106  Bit Score: 68.58  E-value: 1.09e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671 109 TLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDPkrVIVSQATGFQKPEKEIFNLAAEQFDMNPQTTLYVGDSyDN 188
Cdd:cd01427   15 LLKRLRAAGIKLAIVTNRSREALRALLEKLGLGDLFDG--IIGSDGGGTPKPKPKPLLLLLLKLGVDPEEVLFVGDS-EN 91
                         90
                 ....*....|....*
gi 489145671 189 DIMGAFNGGWHSMWF 203
Cdd:cd01427   92 DIEAARAAGGRTVAV 106
HAD_PGPase cd16417
Escherichia coli Gph phosphoglycolate phosphatase and related proteins; belongs to the ...
89-228 2.87e-14

Escherichia coli Gph phosphoglycolate phosphatase and related proteins; belongs to the haloacid dehalogenase-like superfamily; Phosphoglycolate phosphatase (PGP; EC 3.1.3.18) catalyzes the conversion of 2-phosphoglycolate into glycolate and phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319854 [Multi-domain]  Cd Length: 212  Bit Score: 70.34  E-value: 2.87e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  89 FQEVYEHELENITML-DEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkrVIVSQATGFQ-KPEKEIFN 166
Cdd:cd16417   74 FDRHYAETLSVHSHLyPGVKEGLAALKAQGYPLACVTNKPERFVAPLLEALGISDYFS---LVLGGDSLPEkKPDPAPLL 150
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489145671 167 LAAEQFDMNPQTTLYVGDSyDNDIMGAFNGGWHSMW----FNHRG--RQLKPrtkpvyDVAIDNFEQL 228
Cdd:cd16417  151 HACEKLGIAPAQMLMVGDS-RNDILAARAAGCPSVGltygYNYGEdiAASGP------DAVIDSLAEL 211
PRK13222 PRK13222
N-acetylmuramic acid 6-phosphate phosphatase MupP;
89-232 6.19e-14

N-acetylmuramic acid 6-phosphate phosphatase MupP;


Pssm-ID: 237310 [Multi-domain]  Cd Length: 226  Bit Score: 69.45  E-value: 6.19e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  89 FQEVYEHELENITML-DEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkrVIVSQAT-GFQKPEKEIFN 166
Cdd:PRK13222  80 FDRHYAENVAGGSRLyPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFS---VVIGGDSlPNKKPDPAPLL 156
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489145671 167 LAAEQFDMNPQTTLYVGDSyDNDIMGAFNGGWHSMWF----NHRG--RQLKPrtkpvyDVAIDNFEQLFGAV 232
Cdd:PRK13222 157 LACEKLGLDPEEMLFVGDS-RNDIQAARAAGCPSVGVtygyNYGEpiALSEP------DVVIDHFAELLPLL 221
PRK10748 PRK10748
5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB;
2-210 7.83e-12

5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB;


Pssm-ID: 182696 [Multi-domain]  Cd Length: 238  Bit Score: 63.99  E-value: 7.83e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   2 ITAIVFDVDDTIYD---------QQApyrIA-MEKCFPDFDmSVMNQAYIRFRH---------YSDVGfprvmagEWTte 62
Cdd:PRK10748  10 ISALTFDLDDTLYDnrpvilrteQEA---LAfVQNYHPALR-SFQNEDLQRLRQalreaepeiYHDVT-------RWR-- 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  63 yfrfWRCKE-TLLEFGYREIDEAAGVHF-QEVYEHELENITMLDEMRMTLDFLkSKNVPMGIITNGPTEHQLkkvrkLGL 140
Cdd:PRK10748  77 ----WRAIEqAMLDAGLSAEEASAGADAaMINFAKWRSRIDVPQATHDTLKQL-AKKWPLVAITNGNAQPEL-----FGL 146
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671 141 YDYIdpKRVIVSQATGFQKPEKEIFNLAAEQFDMNPQTTLYVGDSYDNDIMGAFNGGWHSMWFNHRGRQL 210
Cdd:PRK10748 147 GDYF--EFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDL 214
HAD_L2-DEX cd02588
L-2-haloacid dehalogenase; L-2-Haloacid dehalogenase catalyzes the hydrolytic dehalogenation ...
4-223 5.67e-11

L-2-haloacid dehalogenase; L-2-Haloacid dehalogenase catalyzes the hydrolytic dehalogenation of L-2-haloacids to produce the corresponding D-2-hydroxyacids with an inversion of the C2-configuration. 2-haloacid dehalogenases are of interest for their potential to degrade recalcitrant halogenated environmental pollutants and their use in the synthesis of industrial chemicals. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319787 [Multi-domain]  Cd Length: 216  Bit Score: 61.13  E-value: 5.67e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   4 AIVFDVDDTIYDQQAPYRIAMEKcFPDFDMSVMNQAYIRFRHYSDV---GFPRVMAGEWTTEYFRFwrckeTLLEFGyRE 80
Cdd:cd02588    2 ALVFDVYGTLIDWHSGLAAAERA-FPGRGEELSRLWRQKQLEYTWLvtlMGPYVDFDELTRDALRA-----TAAELG-LE 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  81 IDEAAGVHFQEVYEHelenITMLDEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkRVIVSQATGFQKP 160
Cdd:cd02588   75 LDESDLDELGDAYLR----LPPFPDVVAGLRRLREAGYRLAILSNGSPDLIEDVVANAGLRDLFD--AVLSAEDVRAYKP 148
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489145671 161 EKEIFNLAAEQFDMNPQTTLYVGDSYdNDIMGAFNGGWHSMWFNHRGRQLKPRTKPVYDVAID 223
Cdd:cd02588  149 APAVYELAAERLGVPPDEILHVASHA-WDLAGARALGLRTAWINRPGEVPDPLGPAPDFVVPD 210
HAD_PPase cd02616
pyrophosphatase similar to Bacillus subtilis PpaX; This family includes Bacillus subtilis PpaX ...
2-197 3.11e-10

pyrophosphatase similar to Bacillus subtilis PpaX; This family includes Bacillus subtilis PpaX which hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr (P-Ser-HPr) dephosphorylation by the bifunctional enzyme HPr kinase/phosphorylase. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319797 [Multi-domain]  Cd Length: 207  Bit Score: 58.83  E-value: 3.11e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   2 ITAIVFDVDDTIYDQQAPYRIAMEKCFPDFDMSVMNQAYIRfrHYSDVGFPRVMAGEWTTEYFRFWrckETLLEFGYREI 81
Cdd:cd02616    1 ITTILFDLDGTLIDTNELIIKSFNHTLKEYGLEGYTREEVL--PFIGPPLRETFEKIDPDKLEDMV---EEFRKYYREHN 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  82 DEaagvhFQEVYEHELEnitmldemrmTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkrVIV-SQATGFQKP 160
Cdd:cd02616   76 DD-----LTKEYPGVYE----------TLARLKSQGIKLGVVTTKLRETALKGLKLLGLDKYFD---VIVgGDDVTHHKP 137
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 489145671 161 EKEIFNLAAEQFDMNPQTTLYVGDSYdNDIMGAFNGG 197
Cdd:cd02616  138 DPEPVLKALELLGAEPEEALMVGDSP-HDILAGKNAG 173
NagD COG0647
Ribonucleotide monophosphatase NagD, HAD superfamily [Nucleotide transport and metabolism];
151-202 1.05e-07

Ribonucleotide monophosphatase NagD, HAD superfamily [Nucleotide transport and metabolism];


Pssm-ID: 440412 [Multi-domain]  Cd Length: 259  Bit Score: 52.03  E-value: 1.05e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 489145671 151 VSQATGFQ-----KPEKEIFNLAAEQFDMNPQTTLYVGDSYDNDIMGAFNGGWHSMW 202
Cdd:COG0647  173 LEAATGGEplvvgKPSPPIYELALERLGVDPERVLMVGDRLDTDILGANAAGLDTLL 229
Hydrolase_like pfam13242
HAD-hyrolase-like;
159-202 1.83e-07

HAD-hyrolase-like;


Pssm-ID: 433056 [Multi-domain]  Cd Length: 75  Bit Score: 47.61  E-value: 1.83e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 489145671  159 KPEKEIFNLAAEQFDMNPQTTLYVGDSYDNDIMGAFNGGWHSMW 202
Cdd:pfam13242   4 KPNPGMLERALARLGLDPERTVMIGDRLDTDILGAREAGARTIL 47
HAD_BPGM-like cd16423
uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized ...
96-226 2.07e-07

uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW; This subfamily includes the uncharacterized Bacillus subtilis YhcW. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319859 [Multi-domain]  Cd Length: 169  Bit Score: 49.95  E-value: 2.07e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  96 ELENITMLDEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkrVIVsqaTGFQ----KPEKEIFNLAAEQ 171
Cdd:cd16423   39 EKTDLPPIEGVKELLEFLKEKGIKLAVASSSPRRWIEPHLERLGLLDYFE---VIV---TGDDveksKPDPDLYLEAAER 112
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489145671 172 FDMNPQTTLYVGDSyDNDIMGAFNGGWHSMWFNHrgRQLKPRTKPVYDVAIDNFE 226
Cdd:cd16423  113 LGVNPEECVVIEDS-RNGVLAAKAAGMKCVGVPN--PVTGSQDFSKADLVLSSFA 164
HAD_BPGM-like cd07505
beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase ...
109-197 3.78e-07

beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily; This family represents the beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. Family members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. It belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319808 [Multi-domain]  Cd Length: 143  Bit Score: 48.77  E-value: 3.78e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671 109 TLDFLKSKNVPMGIITNGPTEHQLKKVRKLGL-YDYIDpkrVIVSQATGFQ-KPEKEIFNLAAEQFDMNPQTTLYVGDSY 186
Cdd:cd07505   49 LLDALKAAGIPVAVATSSSRRNVELLLLELGLlRGYFD---VIVSGDDVERgKPAPDIYLLAAERLGVDPERCLVFEDSL 125
                         90
                 ....*....|.
gi 489145671 187 dNDIMGAFNGG 197
Cdd:cd07505  126 -AGIEAAKAAG 135
HAD_PGPase cd07512
haloacid dehalogenase-like superfamily phosphoglycolate phosphatase, similar to Rhodobacter ...
89-232 8.59e-07

haloacid dehalogenase-like superfamily phosphoglycolate phosphatase, similar to Rhodobacter sphaeroides CbbZ; Phosphoglycolate phosphatase catalyzes the dephosphorylation of phosphoglycolate; its activity requires divalent cations, especially Mg++. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319815 [Multi-domain]  Cd Length: 214  Bit Score: 48.85  E-value: 8.59e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  89 FQEVYEHELENITML-DEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDpkrVIVSQAT-GFQKPEKEIFN 166
Cdd:cd07512   73 FLDHYEADPPGLTRPyPGVIEALERLRAAGWRLAICTNKPEAPARALLSALGLADLFA---AVVGGDTlPQRKPDPAPLR 149
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671 167 LAAEQFDMNPQTTLYVGDSyDNDIMGAFNGGWHSMWFNhRGrqlkPRTKPV----YDVAIDNFEQLFGAV 232
Cdd:cd07512  150 AAIRRLGGDVSRALMVGDS-ETDAATARAAGVPFVLVT-FG----YRHAPVaelpHDAVFSDFDALPDLL 213
HAD_BPGM_like cd07526
subfamily of beta-phosphoglucomutase-like family, similar to Escherichia coli ...
71-185 9.76e-07

subfamily of beta-phosphoglucomutase-like family, similar to Escherichia coli 6-phosphogluconate phosphatase YieH; This subfamily includes Escherichia coli YieH/HAD3 an 6-phosphogluconate phosphatase, which can hydrolyzed purines and pyrimidines as secondary substrates. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate, and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319828 [Multi-domain]  Cd Length: 141  Bit Score: 47.31  E-value: 9.76e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  71 ETLLEFGYReiDEAAgvhfqevYEHELENItmlDEMRMTLDFLkskNVPMGIITNGPTEHQLKKVRKLGLYDYIDPkRVI 150
Cdd:cd07526   24 EVLAELGAR--VLAA-------FEAELQPI---PGAAAALSAL---TLPFCVASNSSRERLTHSLGLAGLLAYFEG-RIF 87
                         90       100       110
                 ....*....|....*....|....*....|....*
gi 489145671 151 VSQATGFQKPEKEIFNLAAEQFDMNPQTTLYVGDS 185
Cdd:cd07526   88 SASDVGRGKPAPDLFLHAAAQMGVAPERCLVIEDS 122
PRK13288 PRK13288
pyrophosphatase PpaX; Provisional
1-197 2.46e-06

pyrophosphatase PpaX; Provisional


Pssm-ID: 237336 [Multi-domain]  Cd Length: 214  Bit Score: 47.33  E-value: 2.46e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671   1 MITAIVFDVDDTIYDqqapyriamekcfpdfdmsvMNQAYIR-----FRHYSDVGFPRvmagewtteyfrfwrckETLLE 75
Cdd:PRK13288   2 KINTVLFDLDGTLIN--------------------TNELIISsflhtLKTYYPNQYKR-----------------EDVLP 44
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  76 F-------GYREIDEAAGVHFQEVY-----EHELENITMLDEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDY 143
Cdd:PRK13288  45 FigpslhdTFSKIDESKVEEMITTYrefnhEHHDELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEF 124
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489145671 144 IDPkrVIVSQATGFQKPEKEIFNLAAEQFDMNPQTTLYVGDSYdNDIMGAFNGG 197
Cdd:PRK13288 125 FDV--VITLDDVEHAKPDPEPVLKALELLGAKPEEALMVGDNH-HDILAGKNAG 175
HAD_Pase_UmpH-like cd07530
UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide ...
151-197 2.49e-06

UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase; Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319832 [Multi-domain]  Cd Length: 247  Bit Score: 47.59  E-value: 2.49e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 489145671 151 VSQATGFQ-----KPEKEIFNLAAEQFDMNPQTTLYVGDSYDNDIMGAFNGG 197
Cdd:cd07530  164 LEAATGVKplfigKPEPIMMRAALEKLGLKSEETLMVGDRLDTDIAAGIAAG 215
HAD-SF-IIA TIGR01460
Haloacid Dehalogenase Superfamily Class (subfamily) IIA; This model represents one structural ...
104-202 1.15e-04

Haloacid Dehalogenase Superfamily Class (subfamily) IIA; This model represents one structural subclass of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The classes are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Class I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Class II consists of sequences in which the capping domain is found between the second and third motifs. Class III sequences have no capping domain in iether of these positions. The Class IIA capping domain is predicted by PSI-PRED to consist of a mixed alpha-beta fold with the basic pattern: Helix-Helix-Helix-Sheet-Helix-Loop-Sheet-Helix-Sheet-Helix. Presently, this subfamily encompasses a single equivalog model (TIGR01452) for the eukaryotic phosphoglycolate phosphatase, as well as four hypothetical equivalogs covering closely related sequences (TIGR01456 and TIGR01458 in eukaryotes, TIGR01457 in gram positive bacteria and TIGR01459 in gram negative bacteria). The Escherishia coli NagD gene and the Bacillus subtilus AraL gene are members of this subfamily but are not members of the any of the presently defined equivalogs within it. NagD is part of the NAG operon responsible for N-acetylglucosamine metabolism. The function of this gene is unknown. Genes from several organisms have been annotated as NagD, or NagD-like. However, without data on the presence of other members of this pathway, (such as in the case of Yersinia pestis) these assignments should not be given great weight. The AraL gene is similar: it is part of the L-arabinose operon, but the function is unknown. A gene from Halobacterium has been annotated as AraL, but no other Ara operon genes have been annotated. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273637 [Multi-domain]  Cd Length: 236  Bit Score: 42.70  E-value: 1.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  104 DEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLYDYIDP--KRVIVSQATGFQKPEKEIFNLAAEQFDMNP-QTTL 180
Cdd:TIGR01460 131 YDELAKAAYLLAEGDVPFIAANRDDLVRLGDGRFRPGAGAIAAgiKELSGREPTVVGKPSPAIYRAALNLLQARPeRRDV 210
                          90       100
                  ....*....|....*....|..
gi 489145671  181 YVGDSYDNDIMGAFNGGWHSMW 202
Cdd:TIGR01460 211 MVGDNLRTDILGAKNAGFDTLL 232
HAD_BPGM cd02598
beta-phosphoglucomutase, similar to Lactococcus lactis beta-phosphoglucomutase (beta-PGM); ...
60-177 1.76e-04

beta-phosphoglucomutase, similar to Lactococcus lactis beta-phosphoglucomutase (beta-PGM); Lactococcus lactis beta-PGM catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), forming beta-D-glucose 1,6-(bis)phosphate as an intermediate. In the forward G6P-forming direction, this reaction links polysaccharide phosphorolysis to glycolysis, in the reverse direction, the reaction provides G1P for the biosynthesis of exo-polysaccharides. This subfamily belongs to the beta-phosphoglucomutase-like family whose other members include Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319788 [Multi-domain]  Cd Length: 174  Bit Score: 41.51  E-value: 1.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  60 TTEY-FRFWRCKETLLEFGYREIDeaagvhfqeVYEHELENIT---MLDEMRMTLDFLKSKNVPMGIIT---NGPtehql 132
Cdd:cd02598   13 TAEYhYRAWKKLADKEELAARKNR---------IYVELIEELTpvdVLPGIASLLVDLKAKGIKIALASaskNAP----- 78
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 489145671 133 KKVRKLGLYDYIDpkrVIVSQAT-GFQKPEKEIFNLAAEQFDMNPQ 177
Cdd:cd02598   79 KILEKLGLAEYFD---AIVDGAVlAKGKPDPDIFLAAAEGLGLNPK 121
HAD_5NT cd02604
haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p ...
122-202 7.42e-04

haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p; This family includes Saccharomyces cerevisiae Phm8p (phosphate metabolism protein 8) and Sdt1p (Suppressor of disruption of TFIIS). Phm8p participates in the ribose salvage pathway, it catalyzes the dephosphorylation of nucleotide monophosphates to nucleosides, its preferred substrates are nucleotide monophosphates AMP, GMP, CMP, and UMP. Phm8p is also a lysophosphatidic acid phosphatase, dephosphorylating lysophosphatidic acids (LPAs) to monoacylglycerol in response to phosphate starvation. Sdt1p is a pyrimidine and pyridine-specific 5'-nucleotidase; it is an NMN/NaMN 5'-nucleotidases involved in the production of nicotinamide riboside and nicotinic acid riboside, and is a pyrimidine 5'-nucleotidase with high specificity for UMP and CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319791 [Multi-domain]  Cd Length: 182  Bit Score: 39.54  E-value: 7.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671 122 IITNGPTEHQLKKVRKLGLYDYIDpkRVIVSQATGFQ-KPEKEIFNLAAEQFDMNPQTTLYVGDSYDNdIMGAFNGGWHS 200
Cdd:cd02604  101 IFTNASKNHAIRVLKRLGLADLFD--GIFDIEYAGPDpKPHPAAFEKAIREAGLDPKRAAFFDDSIRN-LLAAKALGMKT 177

                 ..
gi 489145671 201 MW 202
Cdd:cd02604  178 VL 179
HAD_BsYqeG-like cd16416
Uncharacterized family of the the haloacid dehalogenase-like superfamily, similar to the ...
104-200 1.04e-03

Uncharacterized family of the the haloacid dehalogenase-like superfamily, similar to the uncharacterized protein Bacillus subtilis YqeG; The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319853 [Multi-domain]  Cd Length: 108  Bit Score: 38.02  E-value: 1.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671 104 DEMRMTLDFLKSKNVPMGIITNGPTEHQLKKVRKLGLyDYIDPKRvivsqatgfqKPEKEIFNLAAEQFDMNPQTTLYVG 183
Cdd:cd16416   20 PEVKAWLADLKEAGIKVVLVSNNNERRVAKVIEKLDL-PFVARAG----------KPRPRAFRRALKEMDLPPEQVAMVG 88
                         90
                 ....*....|....*..
gi 489145671 184 DSYDNDIMGAFNGGWHS 200
Cdd:cd16416   89 DQLFTDILGGNRAGLYT 105
HAD_PPase cd07509
inorganic pyrophosphatase similar to a human phospholysine phosphohistidine inorganic ...
153-197 1.33e-03

inorganic pyrophosphatase similar to a human phospholysine phosphohistidine inorganic pyrophosphate phosphatase (LHPP); LHPP hydrolyzes nitrogen-phosphorus bonds in phospholysine, phosphohistidine and imidodiphosphate as well as oxygen-phosphorus bonds in inorganic pyrophosphate in vitro. This family also includes human haloacid dehalogenase like hydrolase domain containing 2 protine (HDHD2) a phosphatase which may be involved in polygenic hypertension. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319812 [Multi-domain]  Cd Length: 248  Bit Score: 39.57  E-value: 1.33e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 489145671 153 QATGFQKPEKEIFNLAAEQFDMNPQTTLYVGDSYDNDIMGAFNGG 197
Cdd:cd07509  166 KATVVGKPSPEFFLSALRSLGVDPEEAVMIGDDLRDDVGGAQACG 210
HAD_PNPase_UmpH-like cd07532
UmpH/NagD family phosphatase para nitrophenyl phosphate phosphatase, similar to Plasmodium ...
157-202 1.53e-03

UmpH/NagD family phosphatase para nitrophenyl phosphate phosphatase, similar to Plasmodium falciparum PNPase; Plasmodium falciparum para nitrophenyl phosphate phosphatase (PNPase) catalyzes the dephosphorylation of thiamine monophosphate to thiamine, other substrates on which its active are nucleotides, phosphorylated sugars, pyridoxal-5-phosphate, and paranitrophenyl phosphate. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319834 [Multi-domain]  Cd Length: 286  Bit Score: 39.60  E-value: 1.53e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 489145671 157 FQKPEKEIFNLAAEQFDMNPQTTLYVGDSYDNDIMGAFNGGWHSMW 202
Cdd:cd07532  204 LGKPNPQILNFLMKSGVIKPERTLMIGDRLKTDILFANNCGFQSLL 249
HAD_Pase_UmpH-like cd07510
UmpH/NagD family phosphatase, similar to human PGP phosphoglycolate phosphatase and ...
159-197 2.65e-03

UmpH/NagD family phosphatase, similar to human PGP phosphoglycolate phosphatase and Schizosaccharomyces pombe PHO2 p-nitrophenylphosphatase; This subfamily includes the phosphoglycolate phosphatases (human PGP and Arabidopsis thaliana PGLP2) and p-nitrophenylphosphatases (Schizosaccharomyces pombe PHO2 and Saccharomyces PHO13p). It belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319813 [Multi-domain]  Cd Length: 282  Bit Score: 38.91  E-value: 2.65e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 489145671 159 KPEKEIFNLAAEQFDMNPQTTLYVGDSYDNDIMGAFNGG 197
Cdd:cd07510  204 KPSRFMFDCISSKFSIDPARTCMVGDRLDTDILFGQNCG 242
HAD-like cd07515
uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily; The ...
98-198 5.65e-03

uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily; The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319817 [Multi-domain]  Cd Length: 131  Bit Score: 36.24  E-value: 5.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489145671  98 ENITMLDEMRMTLDFLKSKNVPMgIITNGPTEHQLKKVRKLGLYDYIDpkRV-IVSqatgfQKPEKEIFNLAAEqFDMNP 176
Cdd:cd07515   14 EPIELLPGVREALAALKADYRLV-LITKGDLLDQEQKLARSGLSDYFD--AVeVVS-----EKDPDTYRRVLSR-YGIGP 84
                         90       100
                 ....*....|....*....|...
gi 489145671 177 QTTLYVGDSYDNDIMGAFN-GGW 198
Cdd:cd07515   85 ERFVMVGNSLRSDILPVLAaGGW 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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