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Conserved domains on  [gi|489173184|ref|WP_003082731|]
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MULTISPECIES: YqjD family protein [Gammaproteobacteria]

Protein Classification

DUF883 family protein( domain architecture ID 10008628)

DUF883 family protein similar to Escherichia coli YqjD, a membrane-anchored ribosome-binding protein that inhibits growth in stationary phase

Gene Ontology:  GO:0043022|GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 1-109 2.98e-22

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


:

Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 83.45  E-value: 2.98e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173184   1 MARKNAvKDNLEQIQHQSYSELQELLSEANSMLADSAAFAGDKADSARARIGALLEKANDALGKGGSAVAERSRHAVDAT 80
Cdd:COG4575    1 MANTKT-TTSVEDSKEDLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAA 79

                         90       100
                 ....*....|....*....|....*....
gi 489173184  81 ESYIGANPWQTVAITTAVGLLAGFLLGRR 109
Cdd:COG4575   80 DDYVHENPWQSVGIAAGVGLLLGLLLARR 108
 
Name Accession Description Interval E-value
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 1-109 2.98e-22

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 83.45  E-value: 2.98e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173184   1 MARKNAvKDNLEQIQHQSYSELQELLSEANSMLADSAAFAGDKADSARARIGALLEKANDALGKGGSAVAERSRHAVDAT 80
Cdd:COG4575    1 MANTKT-TTSVEDSKEDLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAA 79

                         90       100
                 ....*....|....*....|....*....
gi 489173184  81 ESYIGANPWQTVAITTAVGLLAGFLLGRR 109
Cdd:COG4575   80 DDYVHENPWQSVGIAAGVGLLLGLLLARR 108
DUF883_C pfam19029
DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed ...
 80-109 4.72e-09

DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed transmembrane helix found in DUF883 proteins. The helix contains a glycine zipper motif suggestive of dimerization.


Pssm-ID: 465949  Cd Length: 30  Bit Score: 47.93  E-value: 4.72e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 489173184   80 TESYIGANPWQTVAITTAVGLLAGFLLGRR 109
Cdd:pfam19029   1 TDDYVHENPWQTIGIAAGVGLLLGLLLARR 30
PRK10404 PRK10404
stress response protein ElaB;
24-109 6.15e-07

stress response protein ElaB;


Pssm-ID: 182432  Cd Length: 101  Bit Score: 44.07  E-value: 6.15e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173184  24 ELLSEAnsmLADSAAFAGDKADSARARIGALLEKANDALGKGGSAVAE----RSRHAVDATESYIGANPWQTVAITTAVG 99
Cdd:PRK10404  15 TLLSET---LEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDsyyyRAKQAVYRADDYVHEKPWQGIGVGAAVG 91

                         90
                 ....*....|
gi 489173184 100 LLAGFLLGRR 109
Cdd:PRK10404  92 LVLGLLLARR 101
 
Name Accession Description Interval E-value
ElaB COG4575
Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD ...
 1-109 2.98e-22

Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 443632 [Multi-domain]  Cd Length: 108  Bit Score: 83.45  E-value: 2.98e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173184   1 MARKNAvKDNLEQIQHQSYSELQELLSEANSMLADSAAFAGDKADSARARIGALLEKANDALGKGGSAVAERSRHAVDAT 80
Cdd:COG4575    1 MANTKT-TTSVEDSKEDLEADLKALVDDLEELLKSTADDAGEKAAELREKAEAALDEARERLSEAEDAAVERAREAADAA 79

                         90       100
                 ....*....|....*....|....*....
gi 489173184  81 ESYIGANPWQTVAITTAVGLLAGFLLGRR 109
Cdd:COG4575   80 DDYVHENPWQSVGIAAGVGLLLGLLLARR 108
DUF883_C pfam19029
DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed ...
 80-109 4.72e-09

DUF883 C-terminal glycine zipper region; This family corresponds to the C-terminal presumed transmembrane helix found in DUF883 proteins. The helix contains a glycine zipper motif suggestive of dimerization.


Pssm-ID: 465949  Cd Length: 30  Bit Score: 47.93  E-value: 4.72e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 489173184   80 TESYIGANPWQTVAITTAVGLLAGFLLGRR 109
Cdd:pfam19029   1 TDDYVHENPWQTIGIAAGVGLLLGLLLARR 30
PRK10404 PRK10404
stress response protein ElaB;
24-109 6.15e-07

stress response protein ElaB;


Pssm-ID: 182432  Cd Length: 101  Bit Score: 44.07  E-value: 6.15e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173184  24 ELLSEAnsmLADSAAFAGDKADSARARIGALLEKANDALGKGGSAVAE----RSRHAVDATESYIGANPWQTVAITTAVG 99
Cdd:PRK10404  15 TLLSET---LEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDsyyyRAKQAVYRADDYVHEKPWQGIGVGAAVG 91

                         90
                 ....*....|
gi 489173184 100 LLAGFLLGRR 109
Cdd:PRK10404  92 LVLGLLLARR 101
PRK10132 PRK10132
hypothetical protein; Provisional
 4-109 3.58e-06

hypothetical protein; Provisional


Pssm-ID: 182259  Cd Length: 108  Bit Score: 42.16  E-value: 3.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489173184   4 KNAVKDNLEQIqHQSYSELQELLSEansMLADSAAFAGDKADSARARIGALLeKANDALGKGGSAVAERSRHAVDATESY 83
Cdd:PRK10132   7 RNDVDDGVQDI-QNDVNQLADSLES---VLKSWGSDAKGEAEAARRKAQALL-KETRARMHGRTRVQQAARDAVGCADTF 81

                         90       100
                 ....*....|....*....|....*.
gi 489173184  84 IGANPWQTVAITTAVGLLAGFLLGRR 109
Cdd:PRK10132  82 VRERPWCSVGTAAAVGIFIGALLSLR 107
DUF883 pfam05957
DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of ...
 16-68 1.32e-05

DUF883 N-terminal domain; This family consists of several hypothetical bacterial proteins of unknown function. The N-terminal domain found in this entry is related to pfam05532.


Pssm-ID: 461786  Cd Length: 53  Bit Score: 39.42  E-value: 1.32e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 489173184   16 HQSYSELQELLSEANSMLADSAAFAGDKADSARARIGALLEKANDALGKGGSA 68
Cdd:pfam05957   1 EELIDDLKSLLADLEELLKDAADEAGEEADALRERLESRLKRARERLSDAQDA 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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