cytochrome c is an electron carrier protein that contains one or more heme groups, similar to the cytochrome c subunit of alcohol dehydrogenase (quinone)
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
181-264
5.79e-12
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.
:
Pssm-ID: 459641 [Multi-domain] Cd Length: 89 Bit Score: 60.63 E-value: 5.79e-12
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
181-264
5.79e-12
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.
Pssm-ID: 459641 [Multi-domain] Cd Length: 89 Bit Score: 60.63 E-value: 5.79e-12
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome ...
189-261
6.83e-06
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.
Pssm-ID: 275278 [Multi-domain] Cd Length: 78 Bit Score: 43.34 E-value: 6.83e-06
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
181-264
5.79e-12
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.
Pssm-ID: 459641 [Multi-domain] Cd Length: 89 Bit Score: 60.63 E-value: 5.79e-12
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome ...
189-261
6.83e-06
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.
Pssm-ID: 275278 [Multi-domain] Cd Length: 78 Bit Score: 43.34 E-value: 6.83e-06
putative heme-binding domain, Pirellula/Verrucomicrobium type; This model represents a domain ...
177-208
7.72e-05
putative heme-binding domain, Pirellula/Verrucomicrobium type; This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).
Pssm-ID: 274224 Cd Length: 133 Bit Score: 41.58 E-value: 7.72e-05
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
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