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Conserved domains on  [gi|489183239|ref|WP_003092679|]
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MULTISPECIES: YqfO family protein [Pseudomonas]

Protein Classification

YqfO family protein( domain architecture ID 10007221)

YqfO family protein similar to Acanthamoeba polyphaga mimivirus protein R836

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YqfO super family cl23429
PII-like insert in the uncharacterized protein YqfO, YbgI/NIF3 family [Function unknown];
1-100 2.59e-55

PII-like insert in the uncharacterized protein YqfO, YbgI/NIF3 family [Function unknown];


The actual alignment was detected with superfamily member COG3323:

Pssm-ID: 442552  Cd Length: 360  Bit Score: 175.10  E-value: 2.59e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183239   1 MYKLCFYVPESHLDVVKQAVFAAGGGRIGAYDSCCWQSLGQGQFRPLDGSQPYLGQVGQVEHVAEWKVELVVADELIHAS 80
Cdd:COG3323  131 LYKLVVFVPEEHAEAVREALFAAGAGHIGNYDHCSFQTEGTGTFRPLEGANPFIGEVGELERVEEVRIEVIVPESLLKKV 210

                         90       100
                 ....*....|....*....|
gi 489183239  81 VKALKAAHPYETPAYEVWRL 100
Cdd:COG3323  211 LKALKKAHPYEEPAYDIYPL 230
 
Name Accession Description Interval E-value
YqfO COG3323
PII-like insert in the uncharacterized protein YqfO, YbgI/NIF3 family [Function unknown];
1-100 2.59e-55

PII-like insert in the uncharacterized protein YqfO, YbgI/NIF3 family [Function unknown];


Pssm-ID: 442552  Cd Length: 360  Bit Score: 175.10  E-value: 2.59e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183239   1 MYKLCFYVPESHLDVVKQAVFAAGGGRIGAYDSCCWQSLGQGQFRPLDGSQPYLGQVGQVEHVAEWKVELVVADELIHAS 80
Cdd:COG3323  131 LYKLVVFVPEEHAEAVREALFAAGAGHIGNYDHCSFQTEGTGTFRPLEGANPFIGEVGELERVEEVRIEVIVPESLLKKV 210

                         90       100
                 ....*....|....*....|
gi 489183239  81 VKALKAAHPYETPAYEVWRL 100
Cdd:COG3323  211 LKALKKAHPYEEPAYDIYPL 230
CutA1 pfam03091
CutA1 divalent ion tolerance protein; Several gene loci with a possible involvement in ...
 58-102 1.06e-03

CutA1 divalent ion tolerance protein; Several gene loci with a possible involvement in cellular tolerance to copper have been identified. One such locus in eubacteria and archaebacteria, cutA, is thought to be involved in cellular tolerance to a wide variety of divalent cations other than copper. The cutA locus consists of two operons, of one and two genes. The CutA1 protein is a cytoplasmic protein, encoded by the single-gene operon and has been linked to divalent cation tolerance. It has no recognized structural motifs. This family also contains putative proteins from eukaryotes (human and Drosophila).


Pssm-ID: 460800  Cd Length: 98  Bit Score: 35.12  E-value: 1.06e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 489183239   58 GQVEHVAEWKVELVVADELIHASVKALKAAHPYETPAYEVWRLTD 102
Cdd:pfam03091  42 GKIEEDEEVLLLIKTRASLVDALEARIRELHPYEVPEIIALPIEA 86
 
Name Accession Description Interval E-value
YqfO COG3323
PII-like insert in the uncharacterized protein YqfO, YbgI/NIF3 family [Function unknown];
1-100 2.59e-55

PII-like insert in the uncharacterized protein YqfO, YbgI/NIF3 family [Function unknown];


Pssm-ID: 442552  Cd Length: 360  Bit Score: 175.10  E-value: 2.59e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183239   1 MYKLCFYVPESHLDVVKQAVFAAGGGRIGAYDSCCWQSLGQGQFRPLDGSQPYLGQVGQVEHVAEWKVELVVADELIHAS 80
Cdd:COG3323  131 LYKLVVFVPEEHAEAVREALFAAGAGHIGNYDHCSFQTEGTGTFRPLEGANPFIGEVGELERVEEVRIEVIVPESLLKKV 210

                         90       100
                 ....*....|....*....|
gi 489183239  81 VKALKAAHPYETPAYEVWRL 100
Cdd:COG3323  211 LKALKKAHPYEEPAYDIYPL 230
CutA1 pfam03091
CutA1 divalent ion tolerance protein; Several gene loci with a possible involvement in ...
 58-102 1.06e-03

CutA1 divalent ion tolerance protein; Several gene loci with a possible involvement in cellular tolerance to copper have been identified. One such locus in eubacteria and archaebacteria, cutA, is thought to be involved in cellular tolerance to a wide variety of divalent cations other than copper. The cutA locus consists of two operons, of one and two genes. The CutA1 protein is a cytoplasmic protein, encoded by the single-gene operon and has been linked to divalent cation tolerance. It has no recognized structural motifs. This family also contains putative proteins from eukaryotes (human and Drosophila).


Pssm-ID: 460800  Cd Length: 98  Bit Score: 35.12  E-value: 1.06e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 489183239   58 GQVEHVAEWKVELVVADELIHASVKALKAAHPYETPAYEVWRLTD 102
Cdd:pfam03091  42 GKIEEDEEVLLLIKTRASLVDALEARIRELHPYEVPEIIALPIEA 86
CutA1 COG1324
Divalent cation tolerance protein CutA [Inorganic ion transport and metabolism];
58-102 4.00e-03

Divalent cation tolerance protein CutA [Inorganic ion transport and metabolism];


Pssm-ID: 440935  Cd Length: 104  Bit Score: 34.00  E-value: 4.00e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 489183239  58 GQVEHVAEWKVELVVADELIHASVKALKAAHPYETPAYEVWRLTD 102
Cdd:COG1324   46 GKIEEDEEVLLLIKTTAERYDALEARIKELHPYEVPEIIALPIEA 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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