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Conserved domains on  [gi|489183937|ref|WP_003093375|]
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MULTISPECIES: molecular chaperone CupB2 [Pseudomonas]

Protein Classification

molecular chaperone( domain architecture ID 11459711)

molecular chaperone belonging to the periplasmic pilus chaperone family may be involved in fimbrial biogenesis; similar to Escherichia coli fimbrial chaperones, YraI, YqiH, YbgP and ElfD

CATH:  2.60.40.10
Gene Ontology:  GO:0061077|GO:0030288|GO:0043711
PubMed:  1683764|8670884
SCOP:  4002248|4007561

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
5-246 2.77e-87

P pilus assembly protein, chaperone PapD [Extracellular structures];


:

Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 258.77  E-value: 2.77e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937   5 MHRFhSFVAASAVAIALCAGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTP 84
Cdd:COG3121    1 MKRL-LRLLLLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTGDTPYLVQSWVDDWDQDAGPDKATAPFVVTP 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  85 AVTRVDPNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPRDEDEN--NALQFSFRSRFKLFFRPSQLK-SVDSAAGKLQW 161
Cdd:COG3121   80 PLFRLEPGKSQTVRIIRTGPPLPQDRESLFRLNVDEIPPKDASEEgkNTLQIALRTRIKLFYRPAGLKgSPEDAAEKLTW 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937 162 KFlesggagKKTVVQVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFDWQGNPKNMEAASVRYEVINDYGGRNT 241
Cdd:COG3121  160 SL-------VGNGLTVTNPGPYYVTLSDLSLGAGGKKLKKGLGMVLPGSTRRWPLPAGASLAAGGKVTWATINDYGGAVP 232


                 ....*
gi 489183937 242 LDRAL 246
Cdd:COG3121  233 LEATL 237
 
Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
5-246 2.77e-87

P pilus assembly protein, chaperone PapD [Extracellular structures];


Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 258.77  E-value: 2.77e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937   5 MHRFhSFVAASAVAIALCAGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTP 84
Cdd:COG3121    1 MKRL-LRLLLLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTGDTPYLVQSWVDDWDQDAGPDKATAPFVVTP 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  85 AVTRVDPNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPRDEDEN--NALQFSFRSRFKLFFRPSQLK-SVDSAAGKLQW 161
Cdd:COG3121   80 PLFRLEPGKSQTVRIIRTGPPLPQDRESLFRLNVDEIPPKDASEEgkNTLQIALRTRIKLFYRPAGLKgSPEDAAEKLTW 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937 162 KFlesggagKKTVVQVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFDWQGNPKNMEAASVRYEVINDYGGRNT 241
Cdd:COG3121  160 SL-------VGNGLTVTNPGPYYVTLSDLSLGAGGKKLKKGLGMVLPGSTRRWPLPAGASLAAGGKVTWATINDYGGAVP 232


                 ....*
gi 489183937 242 LDRAL 246
Cdd:COG3121  233 LEATL 237
PRK09926 PRK09926
fimbrial chaperone;
4-238 1.25e-77

fimbrial chaperone;


Pssm-ID: 236634 [Multi-domain]  Cd Length: 246  Bit Score: 234.61  E-value: 1.25e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937   4 LMHRFHSFVAASAVAIALCAGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVT 83
Cdd:PRK09926   1 MFFNTKHTTALCFATCMAFSSSSIADIVISGTRIIYKSDQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTAT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  84 PAVTRVDPNGGAVLRIAYLKA-PLPTDRESLFWLNILEVPPR----DEDENNALQFSFRSRFKLFFRPSQLKSVDS-AAG 157
Cdd:PRK09926  81 PPVSRIDPKRGQTIKLMYTAStALPKDRESVFWFNVLEVPPKpdaeKVANQSLLQLAFRTRIKLFYRPDGLKGNPSeAPL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937 158 KLQWKFLESGGagkKTVVQVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFDWQGNPKNMEAASVRYEVINDYG 237
Cdd:PRK09926 161 ALKWSWAGSEG---KASLRVTNPTPYYVSFSSGDLEAGGKRYPVDSKMIAPFSDESMKVKGLSGKASSGKVHFYAINDFG 237


                 .
gi 489183937 238 G 238
Cdd:PRK09926 238 G 238
PapD_N pfam00345
Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich ...
 34-150 2.43e-54

Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.


Pssm-ID: 425623  Cd Length: 123  Bit Score: 170.85  E-value: 2.43e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937   34 GTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVDPNGGAVLRIAYLKAPLPTDRESL 113
Cdd:pfam00345   5 GTRVIYPAGEKEASVTVSNTGDNPYLVQSWVDDGNEEGTDEKAKAPFIVTPPLFRLEPGQEQVLRIYTTGPPLPTDRESL 84

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 489183937  114 FWLNILEVPPRD--EDENNALQFSFRSRFKLFFRPSQLK 150
Cdd:pfam00345  85 FWLNVLEIPPKDkpKGGQNGLQLALRSRIKLFYRPAGLA 123
 
Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
5-246 2.77e-87

P pilus assembly protein, chaperone PapD [Extracellular structures];


Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 258.77  E-value: 2.77e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937   5 MHRFhSFVAASAVAIALCAGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTP 84
Cdd:COG3121    1 MKRL-LRLLLLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTGDTPYLVQSWVDDWDQDAGPDKATAPFVVTP 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  85 AVTRVDPNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPRDEDEN--NALQFSFRSRFKLFFRPSQLK-SVDSAAGKLQW 161
Cdd:COG3121   80 PLFRLEPGKSQTVRIIRTGPPLPQDRESLFRLNVDEIPPKDASEEgkNTLQIALRTRIKLFYRPAGLKgSPEDAAEKLTW 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937 162 KFlesggagKKTVVQVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFDWQGNPKNMEAASVRYEVINDYGGRNT 241
Cdd:COG3121  160 SL-------VGNGLTVTNPGPYYVTLSDLSLGAGGKKLKKGLGMVLPGSTRRWPLPAGASLAAGGKVTWATINDYGGAVP 232


                 ....*
gi 489183937 242 LDRAL 246
Cdd:COG3121  233 LEATL 237
PRK09926 PRK09926
fimbrial chaperone;
4-238 1.25e-77

fimbrial chaperone;


Pssm-ID: 236634 [Multi-domain]  Cd Length: 246  Bit Score: 234.61  E-value: 1.25e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937   4 LMHRFHSFVAASAVAIALCAGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVT 83
Cdd:PRK09926   1 MFFNTKHTTALCFATCMAFSSSSIADIVISGTRIIYKSDQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTAT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  84 PAVTRVDPNGGAVLRIAYLKA-PLPTDRESLFWLNILEVPPR----DEDENNALQFSFRSRFKLFFRPSQLKSVDS-AAG 157
Cdd:PRK09926  81 PPVSRIDPKRGQTIKLMYTAStALPKDRESVFWFNVLEVPPKpdaeKVANQSLLQLAFRTRIKLFYRPDGLKGNPSeAPL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937 158 KLQWKFLESGGagkKTVVQVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFDWQGNPKNMEAASVRYEVINDYG 237
Cdd:PRK09926 161 ALKWSWAGSEG---KASLRVTNPTPYYVSFSSGDLEAGGKRYPVDSKMIAPFSDESMKVKGLSGKASSGKVHFYAINDFG 237


                 .
gi 489183937 238 G 238
Cdd:PRK09926 238 G 238
PapD_N pfam00345
Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich ...
 34-150 2.43e-54

Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.


Pssm-ID: 425623  Cd Length: 123  Bit Score: 170.85  E-value: 2.43e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937   34 GTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVDPNGGAVLRIAYLKAPLPTDRESL 113
Cdd:pfam00345   5 GTRVIYPAGEKEASVTVSNTGDNPYLVQSWVDDGNEEGTDEKAKAPFIVTPPLFRLEPGQEQVLRIYTTGPPLPTDRESL 84

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 489183937  114 FWLNILEVPPRD--EDENNALQFSFRSRFKLFFRPSQLK 150
Cdd:pfam00345  85 FWLNVLEIPPKDkpKGGQNGLQLALRSRIKLFYRPAGLA 123
PRK15249 PRK15249
fimbrial chaperone;
17-239 2.26e-48

fimbrial chaperone;


Pssm-ID: 237930 [Multi-domain]  Cd Length: 253  Bit Score: 159.96  E-value: 2.26e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  17 VAIALCAGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEE-LQVPFSVTPAVTRVDPNGGA 95
Cdd:PRK15249  17 LFLALPATASWASVTILGSRIIYPSTASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENsSAMPFIATPPVFRIQPKAGQ 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  96 VLRIAYLKA-PLPTDRESLFWLNILEVPPRD---EDENNALQFSFRSRFKLFFRPSQLKSVDSAAGKLQWKFLE--SGGA 169
Cdd:PRK15249  97 VVRVIYNNTkKLPQDRESVFWFNVLQVPPTNigsDSGQNKMLVMLRSRIKLFYRPDGLGKPDNLAKKLQIKTVNkgSGKS 176

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489183937 170 GkktvVQVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFdWQGNPKNMEAAS--VRYEVINDYGGR 239
Cdd:PRK15249 177 G----IVIVNPQPWFASLSNLNVKVNGASYNLDADMIAPFSSQTW-WLPGKRSLKSFSgtVTVTLVNDQGAR 243
PRK15253 PRK15253
putative fimbrial assembly chaperone protein StcB; Provisional
 15-237 1.58e-44

putative fimbrial assembly chaperone protein StcB; Provisional


Pssm-ID: 185165 [Multi-domain]  Cd Length: 242  Bit Score: 149.82  E-value: 1.58e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  15 SAVAIALCAGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVDPNGG 94
Cdd:PRK15253  20 SAVLLSAIILPAHAGIVIYGTRVIYPAEKKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESG 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  95 AVLRIAYLKAPLPTDRESLFWLNILEVPP--RDEDENNALQFSFRSRFKLFFRPSQLKSVDSAAgklqwkFLESGGAGKK 172
Cdd:PRK15253 100 QQIKIKKMPNSLPDNKESLFYLNVLDIPPnsQENAGKNVLKFAMQNRIKLIWRPSRIAAVTKDS------FQRIGLFRSN 173

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489183937 173 TVVQVNNPTPYYVSFASVELivdGRV-MSVGKGMVAPFSTKEFdwqgnpkNMEAASVR-YEV--INDYG 237
Cdd:PRK15253 174 KTVIMKNDTANWITVTDVKA---GNTkINDQTIMLPPLSTQNI-------NMKYASTSqYEVtiIDDNG 232
PRK15295 PRK15295
fimbrial assembly chaperone;
13-237 1.53e-40

fimbrial assembly chaperone;


Pssm-ID: 237936 [Multi-domain]  Cd Length: 226  Bit Score: 138.92  E-value: 1.53e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  13 AASAVAIALCAGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEElqvPFSVTPAVTRVDPN 92
Cdd:PRK15295   4 KKSVLVVLLTSHVAHASIVVGGTRLVFDGNNDESSINVENKDSKANLVQSWLSVVDPQVTNKQ---AFIITPPLFRLDAG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  93 GGAVLRIAYLKAPLPTDRESLFWLNILEVPPRDED-ENNALQFSFRSRFKLFFRPSQLK--SVDSAAGKLQWkflesGGA 169
Cdd:PRK15295  81 QKNSIRVIRSGAPLPADRESMYWLNIKGIPSIDDNaSANRVEISINTQIKLIYRPPALTksTPDSQSQQLKW-----QTA 155

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489183937 170 GkkTVVQVNNPTPYYVSFASVELivDGRVMSvGKGMVAPFSTKEFDWQgnPKNMEAASVRYEVINDYG 237
Cdd:PRK15295 156 G--DVITVNNPTPYYMNFASVTL--NSHEVK-SATFVPPKSSASFKLG--STAAPHGTVTWRLISDYG 216
PRK15218 PRK15218
fimbrial assembly chaperone;
19-156 1.85e-40

fimbrial assembly chaperone;


Pssm-ID: 185140 [Multi-domain]  Cd Length: 226  Bit Score: 138.96  E-value: 1.85e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  19 IALC----AGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVDPNGG 94
Cdd:PRK15218   5 IALClacaAMPAWSGIYIYGTRIIYPAQKKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSG 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489183937  95 AVLRIAYLKAPLPTDRESLFWLNILEVPPrDEDEN---NALQFSFRSRFKLFFRPSQLKSVDSAA 156
Cdd:PRK15218  85 QQLKIKKLANNLPGDRESLFYLNVLDIPP-NSDENkdkNIIKFALQNRIKLIYRPPGVQKVDKAT 148
lfpB PRK15290
fimbrial chaperone;
26-237 1.75e-36

fimbrial chaperone;


Pssm-ID: 237934 [Multi-domain]  Cd Length: 243  Bit Score: 128.95  E-value: 1.75e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  26 AHAGLIAQGTRVVFPASEREVTLRV-SNTSGTPVLAQAWIDDGRQDvppEELQVPFSVTPAVTRVDPNGGAVLRIAYLKA 104
Cdd:PRK15290  35 TYAGVVIGGTRVVYLSNNPDKSISVfSKEEKIPYLIQAWVDPFNKE---DKSKAPFTVIPPVSRLEPSQEKVLRIIHTKG 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937 105 P-LPTDRESLFWLNILEVPPRDEDE-NNALQFSFRSRFKLFFRPSQLKSV-DSAAGKLQWKflesgGAGKKTVVQvnNPT 181
Cdd:PRK15290 112 VsLPDDRESVFWLNIKNIPPSASNKaTNSLEIAVKTRIKLFWRPASIRLIpEDAAPKVKWR-----REGRNLIAE--NPN 184

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 489183937 182 PYYVSFASVelIVDGRvmSVGKGMVAPFSTKEFDWqgnPKNMEAASVRYEVINDYG 237
Cdd:PRK15290 185 PIHISVMDV--IVDGH--DVPLNMIRPFETLTLPL---PANSAGGQMTWRFINDYG 233
PRK15246 PRK15246
fimbrial assembly chaperone;
24-237 3.03e-33

fimbrial assembly chaperone;


Pssm-ID: 185158 [Multi-domain]  Cd Length: 233  Bit Score: 120.45  E-value: 3.03e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  24 GTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVDPNGGAVLRIAYL- 102
Cdd:PRK15246   6 GPAQAAVNIDRTRIIFASDDVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSs 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937 103 KAPLPTDRESLFWLNILEVPPRDEDENNA---LQFSFRSRFKLFFRPSQLKSVDSA-AGKLQWKFLESGgagkktvVQVN 178
Cdd:PRK15246  86 RQQLATDRESLFWLNIYQIPPVTQDIKNHprkLVLPLRLRLKILIRPTGLKAPTEAeEKKLRFIAKENT-------IRIV 158

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 489183937 179 NPTPYYVSFAsVELIvdgRVMSVGKGMVAPFSTKEFDWQGNPKnmEAASVRYEVINDYG 237
Cdd:PRK15246 159 NPTSWYMSLT-LTMD---NKKSIGDIMVAPKTALDVPLTRSPT--PGASINYAVINDSG 211
PRK15211 PRK15211
fimbrial chaperone;
11-239 4.87e-33

fimbrial chaperone;


Pssm-ID: 185133 [Multi-domain]  Cd Length: 229  Bit Score: 119.54  E-value: 4.87e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  11 FVAASAVAIALCaGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDvppeELQVPFSVTPAVTRVD 90
Cdd:PRK15211   6 WGLVSLLSLAVC-GQAMAAFVLNGTRFIYDEGRKNISFEVTNQADQTYGGQVWIDNTTQG----SSTVYMVPAPPFFKVR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  91 PNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPR-DEDENNALQFSFRSRFKLFFRPSQLKSVDSAAGKlQWKFLESGGa 169
Cdd:PRK15211  81 PKEKQIIRIMKTDSALPKDRESLFWLNVQEIPPKpKASEGNVLAVALNTQVKLIYRPKALKEGRENAEK-NLQIIHRGG- 158

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489183937 170 gkKTVVQvnNPTPYYvsFASVELIVDGRVMSVGK------GMVAPFSTKEFDwqgnpKNMEAASVRYEVINDYGGR 239
Cdd:PRK15211 159 --ETYLK--NPTPYY--FAVTGVKLNGQPVKLSDrvmneiAQLAPFSEVSLG-----KLSLNGTVTVQAVNDWGGT 223
PRK15208 PRK15208
molecular chaperone LpfB;
12-237 8.61e-32

molecular chaperone LpfB;


Pssm-ID: 237925 [Multi-domain]  Cd Length: 228  Bit Score: 116.55  E-value: 8.61e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  12 VAASAVAIALCAGTAHAGLIA-QGTRVVFPASEREVTLRVSNTSGT-PVLAQAWIDDGRQDVppeelQVPFSVTPAVTRV 89
Cdd:PRK15208   4 ISFTALALALIAQNSFAGGVAlSSTRVIYDGSKKEASLTVNNKSKTeEFLIQSWIDDANGNK-----KTPFIITPPLFKL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  90 DPNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPRDED-EN-NALQFSFRSRFKLFFRPSQLK-SVDSAAGKLQWKfles 166
Cdd:PRK15208  79 DPTKNNVLRIVNITNTLPQDRESVYWINVKAIPAKSEDaENkNVLQIAVRTRLKLFYRPAGLKgNSMDAWNKLRFT---- 154

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489183937 167 gGAGKKtvVQVNNPTPYYVSFAsvELIVDGRVMSvGKGMVAPFSTKEFDWQGNPKNmeAASVRYEVINDYG 237
Cdd:PRK15208 155 -RAGNQ--IKVENPSAFNLTFN--QFYANGRDIE-KAGMVPAKGSLNIELPAGTGK--VSEVKYNIINDFG 217
PRK15299 PRK15299
fimbrial chaperone protein StiB; Provisional
 9-238 2.60e-31

fimbrial chaperone protein StiB; Provisional


Pssm-ID: 185199 [Multi-domain]  Cd Length: 227  Bit Score: 115.26  E-value: 2.60e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937   9 HSFVAASAVAIALCAGTAHAGLIAQGT-RVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEElqVPFSVTPAVT 87
Cdd:PRK15299   2 NSLAKAGLLCCLLCGSLAHAAGINIGTtRVIFHGDAKDASISISNSDNVPYLIQSWAQSISETGASGD--APFMVTPPLF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  88 RVDPNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPRDED-ENNALQFSFRSRFKLFFRPSQL-KSVDSAAGKLQWkfle 165
Cdd:PRK15299  80 RLNGGQKNVLRIIRTGGNLPEDRESLYWLDIKSIPSSNPDnKHNTLMLAVKAEFKLIYRPKALtQKPEEVADRLTW---- 155

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489183937 166 sggAGKKTVVQVNNPTPYYVSFASVELivdGRVMSVGKGMVAPFSTKEFDWQGnpknMEAASVRYEVINDYGG 238
Cdd:PRK15299 156 ---SRQGRTLTVKNPTPYYMNFATLSV---GSQKVKAPRYVAPFGNAQYTLPA----AASGPIAWSIINDFGG 218
PRK15195 PRK15195
molecular chaperone FimC;
28-237 4.49e-30

molecular chaperone FimC;


Pssm-ID: 185117 [Multi-domain]  Cd Length: 229  Bit Score: 111.88  E-value: 4.49e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  28 AGLIAQG-TRVVFPASEREVTLRVSNT-SGTPVLAQAWIDDGRQdvppeELQVPFSVTPAVTRVDPNGGAVLRIAYLKAP 105
Cdd:PRK15195  24 AGGIALGaTRVIYPADAKQTSLAIRNShTNERYLVNSWIENSSG-----VKEKSFIVTPPLFVSEPKSENTLRIIYAGPP 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937 106 LPTDRESLFWLNILEVPPRDEDE---NNALQFSFRSRFKLFFRPSQLKSVDSAAGKlQWKFLESGgagkkTVVQVNNPTP 182
Cdd:PRK15195  99 LAADRESLFWMNVKAIPSVDKNAlegRNVLQLAILSRIKLFVRPINLQELPEEAPD-TLKFSRSG-----NHLKVHNPSP 172

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489183937 183 YYVSFasVELIVDGRvmSVGKGMVAPFSTKEfdwQGNPKNMEaASVRYEVINDYG 237
Cdd:PRK15195 173 YYVTL--VNLQVGSQ--KLGNAMIAPKVNSQ---IPLPSGVQ-GKLKFQTVNDYG 219
PRK15285 PRK15285
fimbrial chaperone StfD;
24-239 2.09e-27

fimbrial chaperone StfD;


Pssm-ID: 185185 [Multi-domain]  Cd Length: 250  Bit Score: 105.63  E-value: 2.09e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  24 GTAHAGLIAQGTRVVFPASEREVTLRVSNT-SGTPVLAQAWIDDGRQdvppEELQVPFSVTPAVTRVDPNGGAVLRIAYL 102
Cdd:PRK15285  21 GSAQAAIAPDRTRLVFRGEDKSISVDLKNAnSKLPYLAQSWVEDEKG----VKITSPLIVVPPVQRIEPSAIGQVKIQGM 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937 103 KA--PLPTDRESLFWLNILEVPPRdEDENNALQFSFRSRFKLFFRPSQLKSVDSaagKLQWKF---LESGGAGkktvVQV 177
Cdd:PRK15285  97 PAlaSLPQDRETLFYYNVREIPPQ-SDKPNTLQIALQTRIKVFYRPQALSKIDM---QHPWQYkitLQRQGNG----YQV 168

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489183937 178 NNPTPYYVSFASVELIVDGR-VMSVGKGMVAPFSTKEFDwqGNPKNMEAASVrYEVINDYGGR 239
Cdd:PRK15285 169 SNPTGYYVVLSNASNRMDGTpARGFSPLVIAPKSNVTLG--GDASELGHSPV-LTYVNDYGAR 228
PRK15224 PRK15224
pili assembly chaperone PapD;
1-240 3.14e-27

pili assembly chaperone PapD;


Pssm-ID: 185146 [Multi-domain]  Cd Length: 237  Bit Score: 104.82  E-value: 3.14e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937   1 MAPLMHRFHSFVAASAVAIALCAGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPpeelqVPF 80
Cdd:PRK15224   1 MAAVLFVSNSITPVYAAEQKLNLNTKSFSVKLGATRVIYHAGTAGATLSVSNPQNYPILVQSSVKAADKSSP-----APF 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  81 SVTPAVTRVDPNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPRDEDENNA-------LQFSFRSRFKLFFRPSQLKSV- 152
Cdd:PRK15224  76 LVMPPLFRLEANQQSQLRIVRTGGDMPTDRETLQWVCIKAVPPENEPSDTQakgatldLNLSINVCDKLIFRPDAVKGTp 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937 153 DSAAGKLQWkfLESGGAgkktvVQVNNPTPYYVSFASVelIVDGRVMSvGKGMVAPFSTKEFDWQGNPKnmeaASVRYEV 232
Cdd:PRK15224 156 EDVAGNLRW--VETGNK-----LKVENPTPFYMNLASV--TVGGKPIT-GLEYIPPFADKTLNMPGSAH----GDIEWRV 221


                 ....*...
gi 489183937 233 INDYGGRN 240
Cdd:PRK15224 222 ITDFGGES 229
PRK15192 PRK15192
pili/flagellar-assembly chaperone;
26-237 1.36e-26

pili/flagellar-assembly chaperone;


Pssm-ID: 185114 [Multi-domain]  Cd Length: 234  Bit Score: 102.86  E-value: 1.36e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  26 AHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQ--DVPPEELQVPFSVTPAVTRVDPNGGAVLRIAYLK 103
Cdd:PRK15192  20 AQAGVVIGGTRFIYHAGAPALSVPVSNHSEASWLIDTHILPGGRwpGTKNEGNITPFVVTPPLFMLSARQENSMRVVYTG 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937 104 APLPTDRESLFWLNILEVpPRDEDENNALQFSFRSRFKLFFRPSQLKSVDSAAGK-LQWKFLESGGAgkktvvqVNNPTP 182
Cdd:PRK15192 100 APLPADRESLFTLSIAAI-PSGKPEANRVQMAFRSALKLLYRPEGLAGNPQQAYRhLIWSLTPDGAT-------VRNPTP 171

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489183937 183 YYVSFasVELIVDGRVMSvGKGMVAPFSTKEFDWqgnPKNMEAASVRYEVINDYG 237
Cdd:PRK15192 172 YYVTL--FLLRANERAQD-NAGVVAPFATRQTDW---CRHTVRCTVRWQSINDYG 220
PRK11385 PRK11385
fimbrial chaperone;
16-238 2.27e-25

fimbrial chaperone;


Pssm-ID: 183112 [Multi-domain]  Cd Length: 236  Bit Score: 99.82  E-value: 2.27e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  16 AVAIALCAGTAHAGLIAQGTRVVFPASEREVTLRVSNTSgtpvlAQAWIDDGRQDVP-------PEELQVPFSVTPAVTR 88
Cdd:PRK11385  14 AVLSLLVAGELQAGVVVGGTRFIFPADRESISILLTNTS-----QESWLINSKINRPtrwaggeASTVPAPLLAAPPLIL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  89 VDPNGGAVLRIAYLKAP-LPTDRESLFWLNILEVpPRDEDENNALQFSFRSRFKLFFRPSQLKSVD-SAAGKLQWKFLES 166
Cdd:PRK11385  89 LKPGTTGTLRLLRTESDiLPVDRETLFELSIASV-PSGKVENQSVKVAMRSVFKLFWRPEGLPGDPlEAYQQLRWTRNSQ 167

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489183937 167 GgagkktvVQVNNPTPYYVSFasVELIVDGRVMSvGKGMVAPFSTKEFDWqgnPKNMEAASVRYEVINDYGG 238
Cdd:PRK11385 168 G-------VQLTNPTPYYINL--IQVSVNGKALS-NAGVVPPKSQRQTSW---CQAIAPCHVAWRAINDYGG 226
PRK15274 PRK15274
putative periplasmic fimbrial chaperone protein SteC; Provisional
 5-185 2.50e-24

putative periplasmic fimbrial chaperone protein SteC; Provisional


Pssm-ID: 185177 [Multi-domain]  Cd Length: 257  Bit Score: 97.54  E-value: 2.50e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937   5 MHRFHSFVAASAVAIALCAG--TAHAGLIAQGTRVVFPASEREVTLRVSNTSGT-PVLAQAWIDDgrqDVPPEELQVpFS 81
Cdd:PRK15274   1 MNKTNHFKRQALIASVLLAAplVSHSAIVPDRTRVIFNGNENSITVTLKNGNATlPYLAQAWLED---DKFAKDTRY-FT 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  82 VTPAVTRVDPNGGAVLRIAYLKAP--LPTDRESLFWLNILEVPPRdEDENNALQFSFRSRFKLFFRPSQLKSVDSAAGKL 159
Cdd:PRK15274  77 ALPPLQRIEPKSDGQVKVQPLPAAasLPQDRESLFYFNVREIPPK-SDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPW 155

                        170       180
                 ....*....|....*....|....*..
gi 489183937 160 QWKF-LESGGAGkktvVQVNNPTPYYV 185
Cdd:PRK15274 156 QTKLtLTYQGDG----VIFDNPTPFYL 178
PRK15254 PRK15254
fimbrial chaperone protein StdC; Provisional
 35-238 5.42e-23

fimbrial chaperone protein StdC; Provisional


Pssm-ID: 185166 [Multi-domain]  Cd Length: 239  Bit Score: 93.68  E-value: 5.42e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  35 TRVVFPASEREVTLRVSNTSGT-PVLAQAWIDDG---RQDVppeelqvpFSVTPAVTRVDPNGGAVLRIAYLKA---PLP 107
Cdd:PRK15254  23 TRIIMDAPQKTVAITLNNDDKTtPFLAQSWVTDAdgvRTDA--------LMALPPLQRIDAGQKSQVRITQVRGltdKLP 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937 108 TDRESLFWLNILEVPPRDEDEnNALQFSFRSRFKLFFRPSQLksVDSAAGKLQWKFLESGGAGKKTvvqVNNPTPYYVSF 187
Cdd:PRK15254  95 QDRETLFWFNVRGVPPKPEDD-NVLQLAMQSQLKLFYRPKAI--IRSSSDQPERKLTAERNAGHLT---LRNPTPYYITV 168

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 489183937 188 ASVELIVDGRVMSVGKG-MVAPFSTKEFDwQGNPKNMEAASVRYevINDYGG 238
Cdd:PRK15254 169 AWLGADRSHRLSGFREGvMVPPLGSLPLK-AVLPAETRTLWVGY--IDDYGG 217
PapD_C pfam02753
Pili assembly chaperone PapD, C-terminal domain; Ig-like beta-sandwich fold. This domain is ...
 177-241 5.03e-21

Pili assembly chaperone PapD, C-terminal domain; Ig-like beta-sandwich fold. This domain is the C-terminal part of the pilus and flagellar-assembly chaperone protein PapD.


Pssm-ID: 426960 [Multi-domain]  Cd Length: 63  Bit Score: 83.47  E-value: 5.03e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489183937  177 VNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKefDWQGNPKNMEAASVRYEVINDYGGRNT 241
Cdd:pfam02753   1 VKNPTPYYVTFSSLSLGGGGKELALDPGMVAPFSSQ--TFAGLPAPAAGGTVSYTYINDYGGIVP 63
PRK15188 PRK15188
fimbrial chaperone protein BcfB; Provisional
 3-208 7.27e-21

fimbrial chaperone protein BcfB; Provisional


Pssm-ID: 185110 [Multi-domain]  Cd Length: 228  Bit Score: 87.51  E-value: 7.27e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937   3 PLMHRFHSFVAASAVAIALCAGtahaGLIAQGTRVVFPASEREVTLRVSNTSGTPV-LAQAWID--DGRQdvppeelQVP 79
Cdd:PRK15188   6 PIFLRLLLLLSAAGLSFAAQAG----GIALGATRVIYPQGSKQTSLPIINSSASNVfLIQSWVAnaDGSR-------STD 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  80 FSVTPAVTRVDPNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPRDEDE--NNALQFSFRSRFKLFFRPSQLKSVDSAAG 157
Cdd:PRK15188  75 FIITPPLFVIQPKKENILRIMYVGPSLPTDRESVFYLNSKAIPSVDKNKltGNSLQIATQSVIKLFIRPKNLAEAPAHAP 154

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 489183937 158 KLQWKFLESGGagkktvVQVNNPTPYYVSFasVELIVDGRVMSvgKGMVAP 208
Cdd:PRK15188 155 STLRCRNERGQ------LTITNPSPYYVSM--VELYSAGKKLP--NTMVPP 195
PRK09918 PRK09918
putative fimbrial chaperone protein; Provisional
 6-237 4.70e-17

putative fimbrial chaperone protein; Provisional


Pssm-ID: 236632 [Multi-domain]  Cd Length: 230  Bit Score: 77.39  E-value: 4.70e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937   6 HRFHSFVAASAVAIALCAGTAHA-GLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIddgrQDVpPEELQVPFSVTP 84
Cdd:PRK09918   1 NRFNLFFLFTALVLLSSSSAVHAaGMVPETSVVIVEESDGEGSINVKNTDSNPILLYTTL----VDL-PEDKSKLLLVTP 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  85 AVTRVDPngGAVLRIAY-LKAPLPTDRESLFWLNILEVPPRDEDeNNALQFSFRSRFKLFFRPSQLKSVDSAagklqWKF 163
Cdd:PRK09918  76 PVARVEP--GQSQQVRFiLKSGSPLNTEHLLRVSFEGVPPKPGG-KNKVVMPIRQDLPVLIQPAALPVVRDP-----WKL 147

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489183937 164 LESGGAGKKtvVQVNNPTPYYVSFA-SVELIVDGRVMSVGKGMVAPFSTKEFdwQGNPKNMEAASVRYEVINDYG 237
Cdd:PRK09918 148 LVWSISGNN--LVVSNPSPYVVRLGqQVILLPSGKVVALPKPYILPGESLTV--AITNSKATDTKVRFFPASRYG 218
PRK15233 PRK15233
fimbrial chaperone SefB;
29-209 6.32e-11

fimbrial chaperone SefB;


Pssm-ID: 185149 [Multi-domain]  Cd Length: 246  Bit Score: 60.51  E-value: 6.32e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937  29 GLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWI--DDgrqdvppEELQVPFSVTPAVTRVDPNGGAVLRIAYLKAPL 106
Cdd:PRK15233  41 GLRLGTTRVIYKEDAPSTSFWIMNEKEYPILVQTQVynDD-------KSSKAPFIVTPPILKVESNARTRLKVIPTSNLF 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489183937 107 PTDRESLFWLNILEVPPRDEDENN---------ALQFSFRSRFKLFFRPsqlKSVDSAAGKLQWKF-LESGGagkkTVVQ 176
Cdd:PRK15233 114 NKNEESLYWLCVKGVPPLNDNESNnknnittnlNVNVVTNSCIKLIYRP---KTIDLTTMEIADKLkLERKG----NSIV 186

                        170       180       190
                 ....*....|....*....|....*....|....
gi 489183937 177 VNNPTPYYVSFASVElivDGRV-MSVGKGMVAPF 209
Cdd:PRK15233 187 IKNPTSSYVNIANIK---SGNLsFNIPNGYIEPF 217
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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