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Conserved domains on  [gi|489185498|ref|WP_003094919|]
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MULTISPECIES: 2-hydroxyacid dehydrogenase [Pseudomonas]

Protein Classification

2-hydroxyacid dehydrogenase( domain architecture ID 10792795)

2-hydroxyacid dehydrogenase such as glycerate dehydrogenase (GDH), which converts hydroxypyruvate to glycerate as a key step in the serine cycle, and may also play an important role in C2 reactions, by interconverting glyoxylate and glycolate

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK06487 PRK06487
2-hydroxyacid dehydrogenase;
5-321 0e+00

2-hydroxyacid dehydrogenase;


:

Pssm-ID: 180588 [Multi-domain]  Cd Length: 317  Bit Score: 562.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498   5 LRAVFLDHASLDLGDLDMRPLRAAFDELQLHAASQPQEVAARLHGARVAISNKAPIDAQCIAACPELELILVSATGTNNI 84
Cdd:PRK06487   1 MRAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISNKVALDAAALAAAPQLKLILVAATGTNNV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  85 DLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELG 164
Cdd:PRK06487  81 DLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 165 GAVARLAEAFGMRVLLGQLPGRPARADRLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDE 244
Cdd:PRK06487 161 GAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDE 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489185498 245 QALADALRGGHLGGAATDVLSVEPPRNGNPLLAPDIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRALRVVN 321
Cdd:PRK06487 241 QALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPLRVVS 317
 
Name Accession Description Interval E-value
PRK06487 PRK06487
2-hydroxyacid dehydrogenase;
5-321 0e+00

2-hydroxyacid dehydrogenase;


Pssm-ID: 180588 [Multi-domain]  Cd Length: 317  Bit Score: 562.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498   5 LRAVFLDHASLDLGDLDMRPLRAAFDELQLHAASQPQEVAARLHGARVAISNKAPIDAQCIAACPELELILVSATGTNNI 84
Cdd:PRK06487   1 MRAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISNKVALDAAALAAAPQLKLILVAATGTNNV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  85 DLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELG 164
Cdd:PRK06487  81 DLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 165 GAVARLAEAFGMRVLLGQLPGRPARADRLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDE 244
Cdd:PRK06487 161 GAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDE 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489185498 245 QALADALRGGHLGGAATDVLSVEPPRNGNPLLAPDIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRALRVVN 321
Cdd:PRK06487 241 QALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPLRVVS 317
2-Hacid_dh_4 cd12162
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
5-311 3.04e-148

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240639 [Multi-domain]  Cd Length: 307  Bit Score: 418.78  E-value: 3.04e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498   5 LRAVFLDHASLDLGDLDMRPLRAAFdELQLHAASQPQEVAARLHGARVAISNKAPIDAQCIAACPELELILVSATGTNNI 84
Cdd:cd12162    1 MKIVFLDGYTLNPGDLSWDPLEFLG-ELTVYDRTSPEEVVERIKDADIVITNKVVLDAEVLAQLPNLKLIGVLATGYNNV 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  85 DLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELG 164
Cdd:cd12162   80 DLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEWQKSPDFCFWDYPIIELAGKTLGIIGYGNIG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 165 GAVARLAEAFGMRVLLGQLPGRPA-RADRLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVD 243
Cdd:cd12162  160 QAVARIARAFGMKVLFAERKGAPPlREGYVSLDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAILINTARGGLVD 239
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489185498 244 EQALADALRGGHLGGAATDVLSVEPPRNGNPLLAPdIPRLIVTPHNAWGSREARQRIVGQLAENAEAW 311
Cdd:cd12162  240 EQALADALNSGKIAGAGLDVLSQEPPRADNPLLKA-APNLIITPHIAWASREARQRLMDILVDNIKAF 306
LdhA COG1052
Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, ...
8-322 3.67e-99

Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, Coenzyme transport and metabolism, General function prediction only]; Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase is part of the Pathway/BioSystem: Pyridoxal phosphate biosynthesis


Pssm-ID: 440672 [Multi-domain]  Cd Length: 316  Bit Score: 294.69  E-value: 3.67e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498   8 VFLDHASLDlgDLDMRPLRAAFDELQLH-AASQPQEVAARLHGARVAISN-KAPIDAQCIAACPELELILVSATGTNNID 85
Cdd:COG1052    4 LVLDPRTLP--DEVLERLEAEHFEVTVYeDETSPEELAERAAGADAVITNgKDPIDAEVLEALPGLKLIANRGVGYDNID 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  86 LAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSsqfclLDFPIVELEGKT----------L 155
Cdd:COG1052   82 LAAAKERGITVTNTPGYLTEAVAEHAVALLLALARRIVEADRRVRAGDWSWS-----PGLLGRDLSGKTlgiiglgrigQ 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 156 gllghgelggAVARLAEAFGMRVLLGQLPGRPA----RADRLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGA 231
Cdd:COG1052  157 ----------AVARRAKGFGMKVLYYDRSPKPEvaelGAEYVSLDELLAESDIVSLHCPLTPETRHLINAEELALMKPGA 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 232 FLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNGNPLLapDIPRLIVTPHNAWGSREARQRIVGQLAENAEAW 311
Cdd:COG1052  227 ILINTARGGLVDEAALIEALKSGRIAGAGLDVFEEEPPPPDHPLL--SLPNVVLTPHIASATEEAREAMAELALDNLLAF 304
                        330
                 ....*....|..
gi 489185498 312 KAGRALR-VVNA 322
Cdd:COG1052  305 LAGEPPPnPVNP 316
2-Hacid_dh pfam00389
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; This family represents the ...
17-321 9.32e-58

D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.


Pssm-ID: 425656 [Multi-domain]  Cd Length: 311  Bit Score: 188.65  E-value: 9.32e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498   17 LGDLDMRPLRAAfdELQLHAASQPQEVAARLHGARVAISNKA-PIDAQCIAACPELELILVSATGTNNIDLAAARERGIV 95
Cdd:pfam00389   7 LSPEALELLKEG--EVEVHDELLTEELLEKAKDADALIVRSRtKVTAEVLEAAPKLKVIGRAGVGVDNVDLDAATERGIL 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498   96 VANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSQFCLldfpivELEGKTLGLLGHGELGGAVARLAEAFG 175
Cdd:pfam00389  85 VTNAPGYNTESVAELTIGLILALARRIPEADASVREGKWKKSGLIGL------ELYGKTLGVIGGGGIGGGVAAIAKAFG 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  176 MRVL---------LGQLPGRPARADRLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQA 246
Cdd:pfam00389 159 MGVVaydpypnpeRAEAGGVEVLSLLLLLLDLPESDDVLTVNPLTTMKTGVIIINEARGMLKDAVAIINAAGGGVIDEAA 238
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489185498  247 LADALRGGHLGGAATDVlSVEPPRNGNPLLapDIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRALR-VVN 321
Cdd:pfam00389 239 LDALLEEGIAAAADLDV-EEEPPPVDSPLL--DLPNVILTPHIGGATEEAQERIAEEAAENILAFLDGGPPAnAVN 311
PGDH TIGR01327
D-3-phosphoglycerate dehydrogenase; This model represents a long form of D-3-phosphoglycerate ...
58-323 2.52e-57

D-3-phosphoglycerate dehydrogenase; This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. [Amino acid biosynthesis, Serine family]


Pssm-ID: 273556 [Multi-domain]  Cd Length: 525  Bit Score: 193.31  E-value: 2.52e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498   58 APIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQS 137
Cdd:TIGR01327  50 TKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  138 sqfcllDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLLGQ--LPgrPARADRL------PLGELLPRVDALTLHC 209
Cdd:TIGR01327 130 ------AFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDpyIS--PERAEQLgvelvdDLDELLARADFITVHT 201
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  210 PLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNgNPLLapDIPRLIVTPHN 289
Cdd:TIGR01327 202 PLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTD-NPLF--DLDNVIATPHL 278
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 489185498  290 AWGSREARQRIVGQLAENA-EAWKAGRALRVVNAG 323
Cdd:TIGR01327 279 GASTREAQENVATQVAEQVlDALKGLPVPNAVNAP 313
 
Name Accession Description Interval E-value
PRK06487 PRK06487
2-hydroxyacid dehydrogenase;
5-321 0e+00

2-hydroxyacid dehydrogenase;


Pssm-ID: 180588 [Multi-domain]  Cd Length: 317  Bit Score: 562.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498   5 LRAVFLDHASLDLGDLDMRPLRAAFDELQLHAASQPQEVAARLHGARVAISNKAPIDAQCIAACPELELILVSATGTNNI 84
Cdd:PRK06487   1 MRAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISNKVALDAAALAAAPQLKLILVAATGTNNV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  85 DLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELG 164
Cdd:PRK06487  81 DLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 165 GAVARLAEAFGMRVLLGQLPGRPARADRLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDE 244
Cdd:PRK06487 161 GAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDE 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489185498 245 QALADALRGGHLGGAATDVLSVEPPRNGNPLLAPDIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRALRVVN 321
Cdd:PRK06487 241 QALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPLRVVS 317
2-Hacid_dh_4 cd12162
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
5-311 3.04e-148

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240639 [Multi-domain]  Cd Length: 307  Bit Score: 418.78  E-value: 3.04e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498   5 LRAVFLDHASLDLGDLDMRPLRAAFdELQLHAASQPQEVAARLHGARVAISNKAPIDAQCIAACPELELILVSATGTNNI 84
Cdd:cd12162    1 MKIVFLDGYTLNPGDLSWDPLEFLG-ELTVYDRTSPEEVVERIKDADIVITNKVVLDAEVLAQLPNLKLIGVLATGYNNV 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  85 DLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELG 164
Cdd:cd12162   80 DLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEWQKSPDFCFWDYPIIELAGKTLGIIGYGNIG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 165 GAVARLAEAFGMRVLLGQLPGRPA-RADRLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVD 243
Cdd:cd12162  160 QAVARIARAFGMKVLFAERKGAPPlREGYVSLDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAILINTARGGLVD 239
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489185498 244 EQALADALRGGHLGGAATDVLSVEPPRNGNPLLAPdIPRLIVTPHNAWGSREARQRIVGQLAENAEAW 311
Cdd:cd12162  240 EQALADALNSGKIAGAGLDVLSQEPPRADNPLLKA-APNLIITPHIAWASREARQRLMDILVDNIKAF 306
LdhA COG1052
Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, ...
8-322 3.67e-99

Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, Coenzyme transport and metabolism, General function prediction only]; Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase is part of the Pathway/BioSystem: Pyridoxal phosphate biosynthesis


Pssm-ID: 440672 [Multi-domain]  Cd Length: 316  Bit Score: 294.69  E-value: 3.67e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498   8 VFLDHASLDlgDLDMRPLRAAFDELQLH-AASQPQEVAARLHGARVAISN-KAPIDAQCIAACPELELILVSATGTNNID 85
Cdd:COG1052    4 LVLDPRTLP--DEVLERLEAEHFEVTVYeDETSPEELAERAAGADAVITNgKDPIDAEVLEALPGLKLIANRGVGYDNID 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  86 LAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSsqfclLDFPIVELEGKT----------L 155
Cdd:COG1052   82 LAAAKERGITVTNTPGYLTEAVAEHAVALLLALARRIVEADRRVRAGDWSWS-----PGLLGRDLSGKTlgiiglgrigQ 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 156 gllghgelggAVARLAEAFGMRVLLGQLPGRPA----RADRLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGA 231
Cdd:COG1052  157 ----------AVARRAKGFGMKVLYYDRSPKPEvaelGAEYVSLDELLAESDIVSLHCPLTPETRHLINAEELALMKPGA 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 232 FLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNGNPLLapDIPRLIVTPHNAWGSREARQRIVGQLAENAEAW 311
Cdd:COG1052  227 ILINTARGGLVDEAALIEALKSGRIAGAGLDVFEEEPPPPDHPLL--SLPNVVLTPHIASATEEAREAMAELALDNLLAF 304
                        330
                 ....*....|..
gi 489185498 312 KAGRALR-VVNA 322
Cdd:COG1052  305 LAGEPPPnPVNP 316
PRK08410 PRK08410
D-2-hydroxyacid dehydrogenase;
8-314 4.89e-86

D-2-hydroxyacid dehydrogenase;


Pssm-ID: 181414 [Multi-domain]  Cd Length: 311  Bit Score: 261.07  E-value: 4.89e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498   8 VFLDHASLdlGDLDMRPLRAaFDELQLHAASQPQEVAARLHGARVAISNKAPIDAQCIAACPELELILVSATGTNNIDLA 87
Cdd:PRK08410   4 VILDAKTL--GDKDLSVFEE-FGDFQIYPTTSPEEVIERIKDANIIITNKVVIDKEVLSQLPNLKLICITATGTNNVDIE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  88 AARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAV 167
Cdd:PRK08410  81 YAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRV 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 168 ARLAEAFGMRVLLGQLPGRPARAD--RLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQ 245
Cdd:PRK08410 161 AKIAQAFGAKVVYYSTSGKNKNEEyeRVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEK 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 246 ALADALRGGHLgGAATDVLSVEPPRNGNPLLAPDIP-RLIVTPHNAWGSREARQRIVGQLAENAEAWKAG 314
Cdd:PRK08410 241 DLAKALDEKDI-YAGLDVLEKEPMEKNHPLLSIKNKeKLLITPHIAWASKEARKTLIEKVKENIKDFLEG 309
SerA COG0111
Phosphoglycerate dehydrogenase or related dehydrogenase [Coenzyme transport and metabolism]; ...
16-321 7.43e-83

Phosphoglycerate dehydrogenase or related dehydrogenase [Coenzyme transport and metabolism]; Phosphoglycerate dehydrogenase or related dehydrogenase is part of the Pathway/BioSystem: Serine biosynthesis


Pssm-ID: 439881 [Multi-domain]  Cd Length: 314  Bit Score: 253.19  E-value: 7.43e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  16 DLGDLDMRPLRAAFD-ELQLHAASQPQEVAARLHGARVAIS-NKAPIDAQCIAACPELELILVSATGTNNIDLAAARERG 93
Cdd:COG0111    8 DLPPEALEALEAAPGiEVVYAPGLDEEELAEALADADALIVrSRTKVTAELLAAAPNLKLIGRAGAGVDNIDLAAATERG 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  94 IVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSqfclldFPIVELEGKT----------Lgllghgel 163
Cdd:COG0111   88 IPVTNAPGANARAVAEYALALLLALARRLPEADRAQRAGRWDRSA------FRGRELRGKTvgivglgrigR-------- 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 164 ggAVARLAEAFGMRVLLGQLPGRPARADRL------PLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTA 237
Cdd:COG0111  154 --AVARRLRAFGMRVLAYDPSPKPEEAADLgvglvdSLDELLAEADVVSLHLPLTPETRGLIGAEELAAMKPGAILINTA 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 238 RGGLVDEQALADALRGGHLGGAATDVLSVEPPRNGNPLLapDIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRAL 317
Cdd:COG0111  232 RGGVVDEDALLAALDSGRLAGAALDVFEPEPLPADSPLW--DLPNVILTPHIAGSTEEAQERAARQVAENIRRFLAGEPL 309

                 ....*
gi 489185498 318 R-VVN 321
Cdd:COG0111  310 RnLVN 314
PRK06932 PRK06932
2-hydroxyacid dehydrogenase;
5-309 1.97e-81

2-hydroxyacid dehydrogenase;


Pssm-ID: 235890 [Multi-domain]  Cd Length: 314  Bit Score: 249.33  E-value: 1.97e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498   5 LRAVFLDHASLDLGDLDMRPlraAFD-ELQLHAASQPQEVAARLHGARVAISNKAPIDAQCIAACPELELILVSATGTNN 83
Cdd:PRK06932   2 MKIVFLDSTAIPKHINIPRP---SFPhEWIEYDHTSAEQTIERAKDADIVITSKVLFTRETLAQLPKLKLIAITATGTNN 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  84 IDLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSQFCLLDFPIVELEGKTLGLLGHGEL 163
Cdd:PRK06932  79 VDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCL 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 164 GGAVARLAEAFGMRVLLGQLPG-RPARADRLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLV 242
Cdd:PRK06932 159 GTEVGRLAQALGMKVLYAEHKGaSVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLV 238
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489185498 243 DEQALADALRGGHLGGAATDVLSVEPPRNGNPLL--APDIPRLIVTPHNAWGSREARQRIVGQLAENAE 309
Cdd:PRK06932 239 DEQALLDALENGKIAGAALDVLVKEPPEKDNPLIqaAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIE 307
formate_dh_like cd05198
Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase ...
40-311 7.02e-81

Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family; Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240622 [Multi-domain]  Cd Length: 302  Bit Score: 247.54  E-value: 7.02e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  40 PQEVAARLHGARVAISN-KAPIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLAL 118
Cdd:cd05198   32 ADELEALLADADALIVSsTTPVTAEVLAKAPKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEAVAEHALGLLLAL 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 119 ATRLPDYQQAVRSGRWQQSsqfclLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLLGQLPGRPARA-----DRL 193
Cdd:cd05198  112 LRRLPRADAAVRRGWGWLW-----AGFPGYELEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRTRKPEPEedlgfRVV 186
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 194 PLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNGN 273
Cdd:cd05198  187 SLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDALLRALKSGKIAGAALDVFEPEPLPADH 266
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 489185498 274 PLLapDIPRLIVTPHNAWGSREARQRIVGQLAENAEAW 311
Cdd:cd05198  267 PLL--ELPNVILTPHIAGYTEEARERMAEIAVENLERF 302
CtBP_dh cd05299
C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related ...
6-318 4.52e-79

C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor; The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity.


Pssm-ID: 240624 [Multi-domain]  Cd Length: 312  Bit Score: 243.19  E-value: 4.52e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498   6 RAVFLDHASLDLgDLDMRPLRAAFDELQLHAASQPQEVAARLHGARVAISNKAPIDAQCIAACPELELILVSATGTNNID 85
Cdd:cd05299    2 KVVITDYDFPDL-DIEREVLEEAGVELVDAQSRTEDELIEAAADADALLVQYAPVTAEVIEALPRLKVIVRYGVGVDNVD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  86 LAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSqfCLldfPIVELEGKTLGLLGHGELGG 165
Cdd:cd05299   81 VAAATERGIPVCNVPDYCTEEVADHALALILALARKLPFLDRAVRAGGWDWTV--GG---PIRRLRGLTLGLVGFGRIGR 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 166 AVARLAEAFGMRVL-----LGQLPGRPARADRLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGG 240
Cdd:cd05299  156 AVAKRAKAFGFRVIaydpyVPDGVAALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTARGG 235
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489185498 241 LVDEQALADALRGGHLGGAATDVLSVEPPRNGNPLLapDIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRALR 318
Cdd:cd05299  236 LVDEAALARALKSGRIAGAALDVLEEEPPPADSPLL--SAPNVILTPHAAWYSEESLAELRRKAAEEVVRVLRGEPPR 311
PGDH_4 cd12173
Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate ...
25-315 1.23e-74

Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.


Pssm-ID: 240650 [Multi-domain]  Cd Length: 304  Bit Score: 231.54  E-value: 1.23e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  25 LRAAFDELQLHAASQPQEVAARLHGAR-VAISNKAPIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYG 103
Cdd:cd12173   16 LREAGIEVDVAPGLSEEELLAIIADADaLIVRSATKVTAEVIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPGAN 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 104 TPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSsqfcllDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVL---- 179
Cdd:cd12173   96 TISVAEHTIALMLALARNIPQADASLRAGKWDRK------KFMGVELRGKTLGIVGLGRIGREVARRARAFGMKVLaydp 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 180 -LGQLPGRPARADRLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGG 258
Cdd:cd12173  170 yISAERAAAGGVELVSLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGAILINTARGGIVDEAALADALKSGKIAG 249
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 489185498 259 AATDVLSVEPPRNGNPLLApdIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGR 315
Cdd:cd12173  250 AALDVFEQEPPPADSPLLG--LPNVILTPHLGASTEEAQERVAVDAAEQVLAVLAGE 304
2-Hacid_dh_11 cd12175
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
25-317 1.23e-69

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240652 [Multi-domain]  Cd Length: 311  Bit Score: 218.98  E-value: 1.23e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  25 LRAAFD---ELQLHAASQPQEVAARLHGARVAISNKAP-IDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCH 100
Cdd:cd12175   16 LRALLPpapGVEVVTAAELDEEAALLADADVLVPGMRKvIDAELLAAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIP 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 101 GYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSQFclldfPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVL- 179
Cdd:cd12175   96 GGNAESVAEHAVMLMLALLRRLPEADRELRAGRWGRPEGR-----PSRELSGKTVGIVGLGNIGRAVARRLRGFGVEVIy 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 180 -----LGQLPGRPARADRLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGG 254
Cdd:cd12175  171 ydrfrDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEELAAMKPGAILINTARGGLVDEEALLAALRSG 250
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489185498 255 HLGGAATDVLSVEPPRNGNPLLApdIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRAL 317
Cdd:cd12175  251 HLAGAGLDVFWQEPLPPDDPLLR--LDNVILTPHIAGVTDESYQRMAAIVAENIARLLRGEPP 311
PGDH_like_2 cd12172
Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; ...
40-307 3.61e-69

Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.


Pssm-ID: 240649 [Multi-domain]  Cd Length: 306  Bit Score: 217.74  E-value: 3.61e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  40 PQEVAARLHGARVAISNKAPIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALA 119
Cdd:cd12172   38 EEELIELLKDADGVIAGLDPITEEVLAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALA 117
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 120 TRLPDYQQAVRSGRWQQssqfclldFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVL----------LGQLPGRPAr 189
Cdd:cd12172  118 RQIPQADREVRAGGWDR--------PVGTELYGKTLGIIGLGRIGKAVARRLSGFGMKVLaydpypdeefAKEHGVEFV- 188
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 190 adrlPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPP 269
Cdd:cd12172  189 ----SLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILINTARGGLVDEEALYEALKSGRIAGAALDVFEEEPP 264
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 489185498 270 RNGNPLLApdIPRLIVTPHNAWGSREARQRIVGQLAEN 307
Cdd:cd12172  265 PADSPLLE--LPNVILTPHIGASTKEAVLRMGTMAAQN 300
2-Hacid_dh_10 cd12171
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
36-311 4.06e-63

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240648 [Multi-domain]  Cd Length: 310  Bit Score: 202.38  E-value: 4.06e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  36 AASQPQEVAARLHGARVAISNKAPIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALL 115
Cdd:cd12171   33 AVEPEEELLEALKDADILITHFAPVTKKVIEAAPKLKLIGVCRGGPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLM 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 116 LALATRLPDYQQAVRSGRWQQSSQFCllDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVL-----LGQLPGRPARA 190
Cdd:cd12171  113 LAETRNIARAHAALKDGEWRKDYYNY--DGYGPELRGKTVGIVGFGAIGRRVAKRLKAFGAEVLvydpyVDPEKIEADGV 190
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 191 DRLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPR 270
Cdd:cd12171  191 KKVSLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARAGLVDEDALIEALEEGKIGGAALDVFPEEPLP 270
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 489185498 271 NGNPLLApdIPRLIVTPHNAWGSREARQRIVGQLAENAEAW 311
Cdd:cd12171  271 ADHPLLK--LDNVTLTPHIAGATRDVAERSPEIIAEELKRY 309
GDH_like_1 cd12161
Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy ...
40-320 4.03e-62

Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family; This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240638 [Multi-domain]  Cd Length: 315  Bit Score: 200.14  E-value: 4.03e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  40 PQEVAARLHGARVAISNKAPIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALA 119
Cdd:cd12161   39 TAELIERSKDADIVMIANMPLPGEVIEACKNLKMISVAFTGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLL 118
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 120 TRLPDYQQAVRSGRWQQSsqfcLLDFpivELEGKTLGLLGHGELGGAVARLAEAFGMRVLlGQLPGRPARADRL-----P 194
Cdd:cd12161  119 RNIVPCDAAVRAGGTKAG----LIGR---ELAGKTVGIVGTGAIGLRVARLFKAFGCKVL-AYSRSEKEEAKALgieyvS 190
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 195 LGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNGN- 273
Cdd:cd12161  191 LDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARGPVVDNEALADALNEGKIAGAGIDVFDMEPPLPADy 270
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 489185498 274 PLLapDIPRLIVTPHNAWGSREA---RQRIVgqlAENAEAWKAGRALRVV 320
Cdd:cd12161  271 PLL--HAPNTILTPHVAFATEEAmekRAEIV---FDNIEAWLAGKPQNVV 315
PGDH_like_1 cd12169
Putative D-3-Phosphoglycerate Dehydrogenases; Phosphoglycerate dehydrogenases (PGDHs) catalyze ...
12-314 3.56e-61

Putative D-3-Phosphoglycerate Dehydrogenases; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.


Pssm-ID: 240646 [Multi-domain]  Cd Length: 308  Bit Score: 197.35  E-value: 3.56e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  12 HASLDLGDLDMRPLRAAFDELQLHAASqPQEVAARLHGAR--VAISNKAPIDAQCIAACPELELILVSATGTNNIDLAAA 89
Cdd:cd12169   10 DVARTLADWSKLDDRAEVTVFNDHLLD-EDALAERLAPFDaiVLMRERTPFPAALLERLPNLKLLVTTGMRNASIDLAAA 88
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  90 RERGIVVANCHGYGTPsVAQHTLALLLALATRLPDYQQAVRSGRWQQSsqfclldfPIVELEGKTLGLLGHGELGGAVAR 169
Cdd:cd12169   89 KERGIVVCGTGGGPTA-TAELTWALILALARNLPEEDAALRAGGWQTT--------LGTGLAGKTLGIVGLGRIGARVAR 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 170 LAEAFGMRVLLGQLPGRPARADRLP------LGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVD 243
Cdd:cd12169  160 IGQAFGMRVIAWSSNLTAERAAAAGveaavsKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTSRGPLVD 239
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489185498 244 EQALADALRGGHLGGAATDVLSVEPPRNGNPLLApdIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAG 314
Cdd:cd12169  240 EGALLAALRAGRIAGAALDVFDVEPLPADHPLRG--LPNVLLTPHIGYVTEEAYEGFYGQAVENIAAWLAG 308
2-Hacid_dh pfam00389
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; This family represents the ...
17-321 9.32e-58

D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.


Pssm-ID: 425656 [Multi-domain]  Cd Length: 311  Bit Score: 188.65  E-value: 9.32e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498   17 LGDLDMRPLRAAfdELQLHAASQPQEVAARLHGARVAISNKA-PIDAQCIAACPELELILVSATGTNNIDLAAARERGIV 95
Cdd:pfam00389   7 LSPEALELLKEG--EVEVHDELLTEELLEKAKDADALIVRSRtKVTAEVLEAAPKLKVIGRAGVGVDNVDLDAATERGIL 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498   96 VANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSQFCLldfpivELEGKTLGLLGHGELGGAVARLAEAFG 175
Cdd:pfam00389  85 VTNAPGYNTESVAELTIGLILALARRIPEADASVREGKWKKSGLIGL------ELYGKTLGVIGGGGIGGGVAAIAKAFG 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  176 MRVL---------LGQLPGRPARADRLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQA 246
Cdd:pfam00389 159 MGVVaydpypnpeRAEAGGVEVLSLLLLLLDLPESDDVLTVNPLTTMKTGVIIINEARGMLKDAVAIINAAGGGVIDEAA 238
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489185498  247 LADALRGGHLGGAATDVlSVEPPRNGNPLLapDIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRALR-VVN 321
Cdd:pfam00389 239 LDALLEEGIAAAADLDV-EEEPPPVDSPLL--DLPNVILTPHIGGATEEAQERIAEEAAENILAFLDGGPPAnAVN 311
PGDH TIGR01327
D-3-phosphoglycerate dehydrogenase; This model represents a long form of D-3-phosphoglycerate ...
58-323 2.52e-57

D-3-phosphoglycerate dehydrogenase; This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. [Amino acid biosynthesis, Serine family]


Pssm-ID: 273556 [Multi-domain]  Cd Length: 525  Bit Score: 193.31  E-value: 2.52e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498   58 APIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQS 137
Cdd:TIGR01327  50 TKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  138 sqfcllDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLLGQ--LPgrPARADRL------PLGELLPRVDALTLHC 209
Cdd:TIGR01327 130 ------AFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDpyIS--PERAEQLgvelvdDLDELLARADFITVHT 201
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  210 PLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNgNPLLapDIPRLIVTPHN 289
Cdd:TIGR01327 202 PLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTD-NPLF--DLDNVIATPHL 278
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 489185498  290 AWGSREARQRIVGQLAENA-EAWKAGRALRVVNAG 323
Cdd:TIGR01327 279 GASTREAQENVATQVAEQVlDALKGLPVPNAVNAP 313
LDH_like_1 cd12187
D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains; ...
60-316 2.67e-56

D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains; D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240663 [Multi-domain]  Cd Length: 329  Bit Score: 185.56  E-value: 2.67e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  60 IDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWqqsSQ 139
Cdd:cd12187   53 LDAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSRKLREAIERTRRGDF---SQ 129
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 140 FCLLDFpivELEGKTLGLLGHGELGGAVARLAEAFGMRVLLGQLPGRPARADRL-----PLGELLPRVDALTLHCPLTED 214
Cdd:cd12187  130 AGLRGF---ELAGKTLGVVGTGRIGRRVARIARGFGMKVLAYDVVPDEELAERLgfryvSLEELLQESDIISLHVPYTPQ 206
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 215 TRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEP--------------PRNGNPLLAPDI 280
Cdd:cd12187  207 THHLINRENFALMKPGAVLINTARGAVVDTEALVRALKEGKLAGAGLDVLEQEEvlreeaelfredvsPEDLKKLLADHA 286
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 489185498 281 ----PRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRA 316
Cdd:cd12187  287 llrkPNVIITPHVAYNTKEALERILDTTVENIKAFAAGQP 326
2-Hacid_dh_13 cd12178
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
19-321 2.68e-56

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240655 [Multi-domain]  Cd Length: 317  Bit Score: 185.13  E-value: 2.68e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  19 DLDMRPLRAAFDElqlhaasqpQEVAARLHGARVAISNKA-PIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVA 97
Cdd:cd12178   22 EVTYYDGLGLISK---------EELLERIADYDALITPLStPVDKEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVT 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  98 NCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSqfcLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMR 177
Cdd:cd12178   93 NTPAVSTEPTAELTFGLILALARRIAEGDRLMRRGGFLGWA---PLFFLGHELAGKTLGIIGMGRIGQAVARRAKAFGMK 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 178 VL---LGQLPGRPAR---ADRLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADAL 251
Cdd:cd12178  170 ILyynRHRLSEETEKelgATYVDLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAARGPLVDEKALVDAL 249
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489185498 252 RGGHLGGAATDVLSVEPPRNGNpLLAPDipRLIVTPHNAWGSREARQRIVGQLAENAEAWKAG-RALRVVN 321
Cdd:cd12178  250 KTGEIAGAALDVFEFEPEVSPE-LKKLD--NVILTPHIGNATVEARDAMAKEAADNIISFLEGkRPKNIVN 317
2-Hacid_dh_1 cd05300
Putative D-isomer specific 2-hydroxyacid dehydrogenase; 2-Hydroxyacid dehydrogenases catalyze ...
16-321 2.78e-55

Putative D-isomer specific 2-hydroxyacid dehydrogenase; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants.


Pssm-ID: 240625 [Multi-domain]  Cd Length: 313  Bit Score: 182.34  E-value: 2.78e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  16 DLGDLDMRPLRAAFDELQLHAaSQPQEVAARLHGARVAISNkaPIDAQCIAACPELELILVSATGTNNIDLAAARERGIV 95
Cdd:cd05300    8 PLDDEHLERLRAAAPGAELRV-VTAEELTEELADADVLLGN--PPLPELLPAAPRLRWIQSTSAGVDALLFPELLERDVV 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  96 VANCHG-YGTPsVAQHTLALLLALATRLPDYQQAVRSGRWQQSsqfclldFPIVELEGKTLGLLGHGELGGAVARLAEAF 174
Cdd:cd05300   85 LTNARGiFGPP-IAEYVLGYMLAFARKLPRYARNQAERRWQRR-------GPVRELAGKTVLIVGLGDIGREIARRAKAF 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 175 GMRVLLGQLPGRPARADRLP------LGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALA 248
Cdd:cd05300  157 GMRVIGVRRSGRPAPPVVDEvytpdeLDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDALI 236
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489185498 249 DALRGGHLGGAATDVLSVEPPRNGNPLLapDIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRALR-VVN 321
Cdd:cd05300  237 EALESGRIAGAALDVFEEEPLPADSPLW--DLPNVIITPHISGDSPSYPERVVEIFLENLRRYLAGEPLLnVVD 308
GDH cd05301
D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH); D-glycerate dehydrogenase (GDH, ...
22-314 3.67e-55

D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH); D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240626 [Multi-domain]  Cd Length: 309  Bit Score: 181.82  E-value: 3.67e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  22 MRPLRAAFDeLQLHAASQP---QEVAARLHGARVAISNKA-PIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVA 97
Cdd:cd05301   14 LALLREGFE-VEVWDEDRPlprEELLEAAKGADGLLCTLTdKIDAELLDAAPPLKVIANYSVGYDHIDVDAAKARGIPVT 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  98 NchgygTP-----SVAQHTLALLLALATRLPDYQQAVRSGRWQQSSQFCLLDfpiVELEGKTLGLLGHGELGGAVARLAE 172
Cdd:cd05301   93 N-----TPdvltdATADLAFALLLAAARRVVEGDRFVRAGEWKGWSPTLLLG---TDLHGKTLGIVGMGRIGQAVARRAK 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 173 AFGMRVLLGQLPGRPARADRL-----PLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQAL 247
Cdd:cd05301  165 GFGMKILYHNRSRKPEAEEELgaryvSLDELLAESDFVSLHCPLTPETRHLINAERLALMKPTAILINTARGGVVDEDAL 244
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489185498 248 ADALRGGHLGGAATDVLSVEPPRNGNPLLapDIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAG 314
Cdd:cd05301  245 VEALKSGKIAGAGLDVFEPEPLPADHPLL--TLPNVVLLPHIGSATVETRTAMAELAADNLLAVLAG 309
PGDH_2 cd05303
Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains; Phosphoglycerate ...
40-307 5.02e-55

Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains; Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.


Pssm-ID: 240628 [Multi-domain]  Cd Length: 301  Bit Score: 181.20  E-value: 5.02e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  40 PQEVAARLHGARVAISNKAP-IDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLAL 118
Cdd:cd05303   32 KEELLEKIKDYDVLIVRSRTkVTKEVIDAAKNLKIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSL 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 119 ATRLPDYQQAVRSGRWQQSsqfcllDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLLGQLPGRPARADRL----- 193
Cdd:cd05303  112 ARFIHRANREMKLGKWNKK------KYKGIELRGKTLGIIGFGRIGREVAKIARALGMNVIAYDPYPKDEQAVELgvktv 185
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 194 PLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNgN 273
Cdd:cd05303  186 SLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRGGVIDEEALLEALKSGKLAGAALDVFENEPPPG-S 264
                        250       260       270
                 ....*....|....*....|....*....|....
gi 489185498 274 PLLApdIPRLIVTPHNAWGSREARQRIVGQLAEN 307
Cdd:cd05303  265 KLLE--LPNVSLTPHIGASTKEAQERIGEELANK 296
2-Hacid_dh_6 cd12165
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
47-320 2.45e-53

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240642 [Multi-domain]  Cd Length: 314  Bit Score: 177.44  E-value: 2.45e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  47 LHGARVAISNKAPIDAQcIAACPELELILVSATGTNNIDLAAARErGIVVANCHGYGtPSVAQHTLALLLALATRLPDYQ 126
Cdd:cd12165   38 LEDADVLVGGRLTKEEA-LAALKRLKLIQVPSAGVDHLPLERLPE-GVVVANNHGNS-PAVAEHALALILALAKRIVEYD 114
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 127 QAVRSGRWqqsSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVL-LGQLPGRPARADRL----PLGELLPR 201
Cdd:cd12165  115 NDLRRGIW---HGRAGEEPESKELRGKTVGILGYGHIGREIARLLKAFGMRVIgVSRSPKEDEGADFVgtlsDLDEALEQ 191
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 202 VDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRnGNPLLAPDIP 281
Cdd:cd12165  192 ADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNVGRGPVVDEEALYEALKERPIAGAAIDVWWRYPSR-GDPVAPSRYP 270
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 489185498 282 -----RLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRALRVV 320
Cdd:cd12165  271 fhelpNVIMSPHNAGWTEETFRRRIDEAAENIRRYLRGEPLLNL 314
PGDH_3 cd12176
Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate ...
25-300 9.26e-53

Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.


Pssm-ID: 240653  Cd Length: 304  Bit Score: 175.46  E-value: 9.26e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  25 LRAAFDELQLHAAS-QPQEVAARLHGARVA-ISNKAPIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGY 102
Cdd:cd12176   17 FRAGGIEVERLKGAlDEDELIEALKDVHLLgIRSKTQLTEEVLEAAPKLLAIGCFCIGTNQVDLDAAAKRGIPVFNAPFS 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 103 GTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSQFCLldfpivELEGKTLGLLGHGELGGAVARLAEAFGMRVLLGQ 182
Cdd:cd12176   97 NTRSVAELVIGEIIMLARRLPDRNAAAHRGIWNKSATGSH------EVRGKTLGIIGYGHIGSQLSVLAEALGMRVIFYD 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 183 LpgrparADRLPLG---------ELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRG 253
Cdd:cd12176  171 I------AEKLPLGnarqvssleELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRGTVVDIDALAEALRS 244
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 489185498 254 GHLGGAATDVLSVEPPRNGNPLLAP--DIPRLIVTPHNAWGSREARQRI 300
Cdd:cd12176  245 GHLAGAAVDVFPEEPASNGEPFSSPlqGLPNVILTPHIGGSTEEAQENI 293
2-Hacid_dh_C pfam02826
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; This domain is inserted ...
121-290 5.65e-52

D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.


Pssm-ID: 427007 [Multi-domain]  Cd Length: 178  Bit Score: 169.21  E-value: 5.65e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  121 RLPDYQQAVRSGRWQQSSqfcllDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLLGQLPGRPARADR------LP 194
Cdd:pfam02826  10 RIPEADRQVRAGRWASPD-----ALLGRELSGKTVGIIGLGRIGRAVAKRLKAFGMKVIAYDRYPKPEEEEEelgaryVS 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  195 LGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNGNP 274
Cdd:pfam02826  85 LDELLAESDVVSLHLPLTPETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPADHP 164
                         170
                  ....*....|....*.
gi 489185498  275 LLapDIPRLIVTPHNA 290
Cdd:pfam02826 165 LL--DLPNVILTPHIA 178
2-Hacid_dh_12 cd12177
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
40-321 2.26e-49

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240654 [Multi-domain]  Cd Length: 321  Bit Score: 167.11  E-value: 2.26e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  40 PQEVAARLHGARVAISNKAPI-DAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYG-TPSVAQHTLALLLA 117
Cdd:cd12177   38 GKALAEKLKGYDIIIASVTPNfDKEFFEYNDGLKLIARHGIGYDNVDLKAATEHGVIVTRVPGAVeRDAVAEHAVALILT 117
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 118 LATRLPDYQQAVRSGRWQQSSQFCLLdfpivELEGKTLGLLGHGELGGAVAR-LAEAFGMRVL-----LGQLPGRPARAD 191
Cdd:cd12177  118 VLRKINQASEAVKEGKWTERANFVGH-----ELSGKTVGIIGYGNIGSRVAEiLKEGFNAKVLaydpyVSEEVIKKKGAK 192
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 192 RLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRN 271
Cdd:cd12177  193 PVSLEELLAESDIISLHAPLTEETYHMINEKAFSKMKKGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEPIKA 272
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 489185498 272 GNPLLApdIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRA-LRVVN 321
Cdd:cd12177  273 DHPLLH--YENVVITPHIGAYTYESLYGMGEKVVDDIEDFLAGKEpKGILN 321
LDH_like cd01619
D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; D-Lactate ...
59-307 1.02e-47

D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240620 [Multi-domain]  Cd Length: 323  Bit Score: 162.86  E-value: 1.02e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  59 PIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALA--TRLPDYQQAVRSGRWQQ 136
Cdd:cd01619   56 KIDAELLDKAPGLKFISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLrnRKYIDERDKNQDLQDAG 135
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 137 SSQFclldfpivELEGKTLGLLGHGELGGAVARLAEAFGMRVLlGQLPGRPA-----RADRLPLGELLPRVDALTLHCPL 211
Cdd:cd01619  136 VIGR--------ELEDQTVGVVGTGKIGRAVAQRAKGFGMKVI-AYDPFRNPeledkGVKYVSLEELFKNSDIISLHVPL 206
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 212 TEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNG------------NPLLApD 279
Cdd:cd01619  207 TPENHHMINEEAFKLMKKGVIIINTARGSLVDTEALIEALDSGKIFGAGLDVLEDETPDLLkdlegeifkdalNALLG-R 285
                        250       260
                 ....*....|....*....|....*...
gi 489185498 280 IPRLIVTPHNAWGSREARQRIVGQLAEN 307
Cdd:cd01619  286 RPNVIITPHTAFYTDDALKNMVEISCEN 313
PRK11790 PRK11790
phosphoglycerate dehydrogenase;
25-300 7.60e-46

phosphoglycerate dehydrogenase;


Pssm-ID: 236985 [Multi-domain]  Cd Length: 409  Bit Score: 160.34  E-value: 7.60e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  25 LRAA-FDELQLHAAS-QPQEVAARLHGAR-VAISNKAPIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHG 101
Cdd:PRK11790  27 LRAAgYTNIEYHKGAlDEEELIEAIKDAHfIGIRSRTQLTEEVLAAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPF 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 102 YGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSQFClldfpiVELEGKTLGLLGHGELGGAVARLAEAFGMRVLLG 181
Cdd:PRK11790 107 SNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGS------FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFY 180
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 182 QLpgrparADRLPLG---------ELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALR 252
Cdd:PRK11790 181 DI------EDKLPLGnarqvgsleELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALK 254
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 489185498 253 GGHLGGAATDVLSVEPPRNGNPLLAP--DIPRLIVTPHNAWGSREARQRI 300
Cdd:PRK11790 255 SGHLAGAAIDVFPVEPKSNGDPFESPlrGLDNVILTPHIGGSTQEAQENI 304
PRK13243 PRK13243
glyoxylate reductase; Reviewed
59-315 8.35e-45

glyoxylate reductase; Reviewed


Pssm-ID: 183914  Cd Length: 333  Bit Score: 155.72  E-value: 8.35e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  59 PIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSS 138
Cdd:PRK13243  56 RIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRG 135
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 139 -QFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLLGQLPGRPA-----RADRLPLGELLPRVDALTLHCPLT 212
Cdd:PRK13243 136 vAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEaekelGAEYRPLEELLRESDFVSLHVPLT 215
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 213 EDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNgNPLLAPDipRLIVTPHNAWG 292
Cdd:PRK13243 216 KETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYN-EELFSLK--NVVLAPHIGSA 292
                        250       260
                 ....*....|....*....|...
gi 489185498 293 SREARQRIVGQLAENAEAWKAGR 315
Cdd:PRK13243 293 TFEAREGMAELVAENLIAFKRGE 315
HPPR cd12156
Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase; ...
19-311 4.68e-44

Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase; Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240633 [Multi-domain]  Cd Length: 301  Bit Score: 152.62  E-value: 4.68e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  19 DLDMRPLRAAFDELQLHAASQPQEVAARlHGAR---VAISNKAPIDAQCIAACPELELILVSATGTNNIDLAAARERGIV 95
Cdd:cd12156   11 PELLAELEARFTVHRLWEAADPAALLAE-HGGRiraVVTNGETGLSAALIAALPALELIASFGVGYDGIDLDAARARGIR 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  96 VANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSsqfcllDFPI-VELEGKTLGLLGHGELGGAVARLAEAF 174
Cdd:cd12156   90 VTNTPGVLTDDVADLAVGLLLAVLRRIPAADRFVRAGRWPKG------AFPLtRKVSGKRVGIVGLGRIGRAIARRLEAF 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 175 GMRVLLGqlpGRPARADrLP------LGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALA 248
Cdd:cd12156  164 GMEIAYH---GRRPKPD-VPyryyasLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLVNVARGSVVDEAALI 239
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489185498 249 DALRGGHLGGAATDVLSVEPprNGNPLLApDIPRLIVTPHNAWGSREARQRIVGQLAENAEAW 311
Cdd:cd12156  240 AALQEGRIAGAGLDVFENEP--NVPAALL-DLDNVVLTPHIASATVETRRAMGDLVLANLEAF 299
Mand_dh_like cd12168
D-Mandelate Dehydrogenase-like dehydrogenases; D-Mandelate dehydrogenase (D-ManDH), identified ...
59-311 6.72e-44

D-Mandelate Dehydrogenase-like dehydrogenases; D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240645 [Multi-domain]  Cd Length: 321  Bit Score: 152.70  E-value: 6.72e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  59 PIDAQCIAACPE-LELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQS 137
Cdd:cd12168   64 PFDEELISPLPPsLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSRAERSARAGKWRGF 143
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 138 SQFCLLDFPivelEGKTLGLLGHGELGGAVARLAEAFGMRVLL---GQLPGRPARADRLP---LGELLPRVDALTLHCPL 211
Cdd:cd12168  144 LDLTLAHDP----RGKTLGILGLGGIGKAIARKAAAFGMKIIYhnrSRLPEELEKALATYyvsLDELLAQSDVVSLNCPL 219
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 212 TEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPprNGNPLLApDIPRLIVTPHNAW 291
Cdd:cd12168  220 TAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDALVDALESGKVASAGLDVFENEP--EVNPGLL-KMPNVTLLPHMGT 296
                        250       260
                 ....*....|....*....|
gi 489185498 292 GSREARQRIVGQLAENAEAW 311
Cdd:cd12168  297 LTVETQEKMEELVLENIEAF 316
PGDH_like_3 cd12174
Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; ...
65-288 5.64e-42

Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.


Pssm-ID: 240651 [Multi-domain]  Cd Length: 305  Bit Score: 147.32  E-value: 5.64e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  65 IAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPD--------YQQAVRSGRWQQ 136
Cdd:cd12174   45 MDFAPSLKAIARAGAGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIQaikwvtngDGDDISKGVEKG 124
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 137 SSQFclldfPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLlGQLPGRPA-RADRLP--------LGELLPRVDALTL 207
Cdd:cd12174  125 KKQF-----VGTELRGKTLGVIGLGNIGRLVANAALALGMKVI-GYDPYLSVeAAWKLSvevqrvtsLEELLATADYITL 198
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 208 HCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVlsvepprnGNPLLAPDIPRLIVTP 287
Cdd:cd12174  199 HVPLTDETRGLINAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGGYVTDF--------PEPALLGHLPNVIATP 270

                 .
gi 489185498 288 H 288
Cdd:cd12174  271 H 271
PTDH cd12157
Thermostable Phosphite Dehydrogenase; Phosphite dehydrogenase (PTDH), a member of the ...
60-307 1.61e-41

Thermostable Phosphite Dehydrogenase; Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain.


Pssm-ID: 240634 [Multi-domain]  Cd Length: 318  Bit Score: 146.66  E-value: 1.61e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  60 IDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSQ 139
Cdd:cd12157   56 IDADFLDACPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGRHILAGDRFVRSGKFGGWRP 135
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 140 FclldFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVL------LGQLPGRPARADRLPLGELLPRVDALTLHCPLTE 213
Cdd:cd12157  136 K----FYGTGLDGKTVGILGMGALGRAIARRLSGFGATLLyydphpLDQAEEQALNLRRVELDELLESSDFLVLALPLTP 211
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 214 DTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEP------PRNGNPLLAPDIPRLIVTP 287
Cdd:cd12157  212 DTLHLINAEALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEMEDwarpdrPRSIPQELLDQHDRTVFTP 291
                        250       260
                 ....*....|....*....|
gi 489185498 288 HNAWGSREARQRIVGQLAEN 307
Cdd:cd12157  292 HIGSAVDEVRLEIELEAALN 311
2-Hacid_dh_8 cd12167
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
42-318 1.11e-39

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240644 [Multi-domain]  Cd Length: 330  Bit Score: 141.93  E-value: 1.11e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  42 EVAARLHGARVAIS--NKAPIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALA 119
Cdd:cd12167   42 ELRALLAGVEVLVTgwGTPPLDAELLARAPRLRAVVHAAGSVRGLVTDAVWERGILVTSAADANAEPVAEFTLAAILLAL 121
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 120 TRLPDYQQAVRSGRWQQssqfCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLLGQLPGRPARADRL-----P 194
Cdd:cd12167  122 RRIPRFAAAYRAGRDWG----WPTRRGGRGLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYDPYLPAAEAAALgvelvS 197
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 195 LGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLgGAATDVLSVEPPRNGNP 274
Cdd:cd12167  198 LDELLARSDVVSLHAPLTPETRGMIDARLLALMRDGATFINTARGALVDEAALLAELRSGRL-RAALDVTDPEPLPPDSP 276
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 489185498 275 LLapDIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRALR 318
Cdd:cd12167  277 LR--TLPNVLLTPHIAGSTGDERRRLGDYALDELERFLAGEPLL 318
FDH cd05302
NAD-dependent Formate Dehydrogenase (FDH); NAD-dependent formate dehydrogenase (FDH) catalyzes ...
42-318 6.31e-39

NAD-dependent Formate Dehydrogenase (FDH); NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form.


Pssm-ID: 240627  Cd Length: 348  Bit Score: 140.54  E-value: 6.31e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  42 EVAARLHGARVAISNK---APIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLAL 118
Cdd:cd05302   53 ELEKHLPDADVVISTPfhpAYMTAERIAKAKNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILIL 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 119 ATR-LPDYQQAVRsGRWqqssqfcllDFPIV-----ELEGKTLGLLGHGELGGAVARLAEAFGMRVL------LGQLPGR 186
Cdd:cd05302  133 VRNyVPGHEQAIE-GGW---------NVADVvkrayDLEGKTVGTVGAGRIGLRVLRRLKPFDVHLLyydrhrLPEEVEK 202
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 187 PARADRLP-LGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLS 265
Cdd:cd05302  203 ELGLTRHAdLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAYLVNTARGKICDREAVAEALESGHLAGYAGDVWF 282
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 489185498 266 VEPPRNGNPLLapDIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRALR 318
Cdd:cd05302  283 PQPAPKDHPWR--TMPNNAMTPHISGTTLDAQARYAAGTKEILERFFEGEPFR 333
LDH_like_2 cd12183
D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; D-Lactate ...
73-317 9.45e-39

D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240659  Cd Length: 328  Bit Score: 139.50  E-value: 9.45e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  73 LILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGrwqqssqfcllDFPI----- 147
Cdd:cd12183   71 LIALRCAGFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIHRAYNRVREG-----------NFSLdgllg 139
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 148 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLLGQLPGRPARADR----LPLGELLPRVDALTLHCPLTEDTRGMLGAAE 223
Cdd:cd12183  140 FDLHGKTVGVIGTGKIGQAFARILKGFGCRVLAYDPYPNPELAKLgveyVDLDELLAESDIISLHCPLTPETHHLINAET 219
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 224 LALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPP-----RNGNPLLAPDIPRL------IVTPHNAWG 292
Cdd:cd12183  220 IAKMKDGVMLINTSRGGLIDTKALIEALKSGKIGGLGLDVYEEEAGlffedHSDEIIQDDVLARLlsfpnvLITGHQAFF 299
                        250       260
                 ....*....|....*....|....*
gi 489185498 293 SREARQRIVGQLAENAEAWKAGRAL 317
Cdd:cd12183  300 TKEALTNIAETTLENLDDFEAGKPL 324
PRK07574 PRK07574
NAD-dependent formate dehydrogenase;
40-323 7.75e-36

NAD-dependent formate dehydrogenase;


Pssm-ID: 181041  Cd Length: 385  Bit Score: 133.26  E-value: 7.75e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  40 PQEVAAR-LHGARVAISN---KAPIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALL 115
Cdd:PRK07574  80 PDSDFEKeLPDADVVISQpfwPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMI 159
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 116 LALATR-LPDYQQAVRSGrW------QQSsqfclldfpiVELEGKTLGLLGHGELGGAVARLAEAFGMRVLLGQlPGRPA 188
Cdd:PRK07574 160 LALVRNyEPSHRQAVEGG-WniadcvSRS----------YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTD-RHRLP 227
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 189 RADRLPLG--------ELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAA 260
Cdd:PRK07574 228 EEVEQELGltyhvsfdSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYA 307
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489185498 261 TDVLSVEPPRNGNPLLApdIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRALR----VVNAG 323
Cdd:PRK07574 308 GDVWFPQPAPADHPWRT--MPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRdeylIVDGG 372
LDH cd12186
D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding ...
79-301 8.97e-35

D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains; D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240662  Cd Length: 329  Bit Score: 128.81  E-value: 8.97e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  79 TGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSG--RWQQssqfclldfPIV--ELEGKT 154
Cdd:cd12186   77 AGVDMIDLDLAKENGLKITNVPAYSPRAIAEFAVTQALNLLRNTPEIDRRVAKGdfRWAP---------GLIgrEIRDLT 147
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 155 LGLLGHGELGGAVARLAEAFGMRVL---LGQLPG-RPARADRLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPG 230
Cdd:cd12186  148 VGIIGTGRIGSAAAKIFKGFGAKVIaydPYPNPElEKFLLYYDSLEDLLKQADIISLHVPLTKENHHLINAEAFAKMKDG 227
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 231 AFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPP-----RNGNPLLAPDI------PRLIVTPHNAWGSREARQR 299
Cdd:cd12186  228 AILVNAARGGLVDTKALIDALDSGKIAGAALDTYENETGyfnkdWSGKEIEDEVLkeliamPNVLITPHIAFYTDTAVKN 307

                 ..
gi 489185498 300 IV 301
Cdd:cd12186  308 MV 309
HGDH_LDH_like cd12185
Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, ...
31-314 1.33e-32

Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains; This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240661  Cd Length: 322  Bit Score: 123.09  E-value: 1.33e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  31 ELQLHAASQPQEVAARLHGAR-VAISNKAPIDAQCIAACPELELILVS--ATGTNNIDLAAARERGIVVANCHgYGTPSV 107
Cdd:cd12185   26 EVTLTKEPLTLENAHLAEGYDgISILGKSKISAELLEKLKEAGVKYIStrSIGYDHIDLDAAKELGIKVSNVT-YSPNSV 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 108 AQHTLALLLALatrLPDYQQAVRSGRWQQSSQFCLLDfpiVELEGKTLGLLGHGELGGAVARLAEAFGMRVLLGQLPGRP 187
Cdd:cd12185  105 ADYTVMLMLMA---LRKYKQIMKRAEVNDYSLGGLQG---RELRNLTVGVIGTGRIGQAVIKNLSGFGCKILAYDPYPNE 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 188 A---RADRLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVL 264
Cdd:cd12185  179 EvkkYAEYVDLDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTARGELIDTEALIEGLESGKIGGAALDVI 258
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489185498 265 SVE-----PPRNGNPLLAPDI------PRLIVTPHNAWGSREARQRIVGQLAENAEAWKAG 314
Cdd:cd12185  259 EGEdgiyyNDRKGDILSNRELailrsfPNVILTPHMAFYTDQAVSDMVENSIESLVAFEKG 319
2-Hacid_dh_2 cd12159
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
92-317 1.92e-32

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240636  Cd Length: 303  Bit Score: 122.37  E-value: 1.92e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  92 RGIVVANCHGYGTPSVAQHTLALLLALATRLPdyqQAVRSGRWQQSSQFCLLDFpiveLEGKTLGLLGHGELGGAVARLA 171
Cdd:cd12159   72 PGRRWTNAAGAYAETVAEHALALLLAGLRQLP---ARARATTWDPAEEDDLVTL----LRGSTVAIVGAGGIGRALIPLL 144
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 172 EAFGMRVLLGQLPGRPA-------RADRLplGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDE 244
Cdd:cd12159  145 APFGAKVIAVNRSGRPVegadetvPADRL--DEVWPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDT 222
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489185498 245 QALADALRGGHLGGAATDVLSVEPPRNGNPLLapDIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRAL 317
Cdd:cd12159  223 DALVDALRSGEIAGAALDVTDPEPLPDGHPLW--SLPNALITPHVANTPEVIRPLLAERVAENVRAFAAGEPL 293
2-Hacid_dh_15 cd12180
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
166-318 7.44e-31

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240657  Cd Length: 308  Bit Score: 118.21  E-value: 7.44e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 166 AVARLAEAFGMRVLLGQLPGRPA------RADRLplGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARG 239
Cdd:cd12180  149 ALARRALALGMRVLALRRSGRPSdvpgveAAADL--AELFARSDHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARG 226
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489185498 240 GLVDEQALADALRGGHLGGAATDVLSVEPPRNGNPLLAPdiPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRALR 318
Cdd:cd12180  227 GLVDQEALLEALDSGRISLASLDVTDPEPLPEGHPLYTH--PRVRLSPHTSAIAPDGRRNLADRFLENLARYRAGQPLH 303
PGDH_1 cd12155
Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family; Phosphoglycerate ...
14-313 1.40e-30

Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family; Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240632 [Multi-domain]  Cd Length: 314  Bit Score: 117.30  E-value: 1.40e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  14 SLDLGDLDMRPLRAAFDELQLHAASQPQeVAARLHGARVAISNKAPIDAQCIAACPELELILVSATGTNNIDLAAARERG 93
Cdd:cd12155    5 TLDYGDEKEEQIEDLGYDVDVVFEDELS-DEEDLEDIEILYGYNPDFDELDLAKMKNLKWIQLYSAGVDYLPLEYIKKKG 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  94 IVVANCHGYGTPSVAQHTLALLlalatrLPDYQQAVRSGRWQQSSQFcLLDFPIVELEGKTLGLLGHGELGGAVARLAEA 173
Cdd:cd12155   84 ILLTNNSGIHSIPIAEWIVGYI------LEIYKGLKKAYKNQKEKKW-KMDSSLLELYGKTILFLGTGSIGQEIAKRLKA 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 174 FGMRVLLGQLPGRPARA-DR-LPLGEL---LPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALA 248
Cdd:cd12155  157 FGMKVIGVNTSGRDVEYfDKcYPLEELdevLKEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFINVGRGPSVDEDALI 236
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489185498 249 DALRGGHLGGAATDVLSVEP-PRNgNPLLapDIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKA 313
Cdd:cd12155  237 EALKNKQIRGAALDVFEEEPlPKD-SPLW--DLDNVLITPHISGVSEHFNERLFDIFYENLKSFLE 299
PLN02928 PLN02928
oxidoreductase family protein
29-290 2.49e-30

oxidoreductase family protein


Pssm-ID: 215501  Cd Length: 347  Bit Score: 117.47  E-value: 2.49e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  29 FDELQLHAASQPQeVAARLHGARVAISNKAPIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGT---P 105
Cdd:PLN02928  42 YPFIQVDAVARED-VPDVIANYDICVPKMMRLDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTgnaA 120
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 106 SVAQHTLALLLALATRLPDYQQAVRSGRwqqssqfclLDFPI-VELEGKTLGLLGHGELGGAVARLAEAFGMRVL----- 179
Cdd:PLN02928 121 SCAEMAIYLMLGLLRKQNEMQISLKARR---------LGEPIgDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLatrrs 191
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 180 --LGQLPGRPARADRLP-----------LGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQA 246
Cdd:PLN02928 192 wtSEPEDGLLIPNGDVDdlvdekgghedIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDA 271
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 489185498 247 LADALRGGHLGGAATDVLSVEPPRNGNPLLApdIPRLIVTPHNA 290
Cdd:PLN02928 272 VLAALESGHLGGLAIDVAWSEPFDPDDPILK--HPNVIITPHVA 313
2-Hacid_dh_14 cd12179
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
54-311 1.02e-29

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240656 [Multi-domain]  Cd Length: 306  Bit Score: 115.08  E-value: 1.02e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  54 ISNKAPIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGR 133
Cdd:cd12179   46 IRSRFPIDKEFIEKATNLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQEVRNGI 125
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 134 WQQSSQFClldfpiVELEGKTLGLLGHGELGGAVARLAEAFGMRVLL-GQLPGRP-ARADRLPLGELLPRVDALTLHCPL 211
Cdd:cd12179  126 WDREGNRG------VELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAyDKYKNFGdAYAEQVSLETLFKEADILSLHIPL 199
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 212 TEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNGNPLLAPDI-------PRLI 284
Cdd:cd12179  200 TPETRGMVNKEFISSFKKPFYFINTARGKVVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAfeyliksPKVI 279
                        250       260
                 ....*....|....*....|....*..
gi 489185498 285 VTPHNAWGSREARQRIVGQLAENAEAW 311
Cdd:cd12179  280 LTPHIAGWTFESYEKIAEVLVDKIKAL 306
2-Hacid_dh_7 cd12166
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
52-320 4.41e-28

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240643 [Multi-domain]  Cd Length: 300  Bit Score: 110.37  E-value: 4.41e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  52 VAISNKAPIDAQCIAACPELELILVSATGTNNIdlAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRS 131
Cdd:cd12166   42 VPPYMAAPPVLEALRALPRLRVVQTLSAGYDGV--LPLLPEGVTLCNARGVHDASTAELAVALILASLRGLPRFVRAQAR 119
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 132 GRWQQssqfclldFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLLGQLPGRPARA----DRLPlgELLPRVDALTL 207
Cdd:cd12166  120 GRWEP--------RRTPSLADRRVLIVGYGSIGRAIERRLAPFEVRVTRVARTARPGEQvhgiDELP--ALLPEADVVVL 189
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 208 HCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLgGAATDVLSVEPPRNGNPLLapDIPRLIVTP 287
Cdd:cd12166  190 IVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDALVAELASGRL-RAALDVTDPEPLPPGHPLW--SAPGVLITP 266
                        250       260       270
                 ....*....|....*....|....*....|...
gi 489185498 288 HNAWGSREARQRIVGQLAENAEAWKAGRALRVV 320
Cdd:cd12166  267 HVGGATPAFLPRAYALVRRQLRRYAAGEPLENV 299
2-Hacid_dh_5 cd12163
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
69-317 1.26e-27

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240640  Cd Length: 334  Bit Score: 110.06  E-value: 1.26e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  69 PELELILVSATGTNN-IDLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSQFCLldfpI 147
Cdd:cd12163   53 PNLRLVQLFSAGADHwLGHPLYKDPEVPLCTASGIHGPQIAEWVIGTWLVLSHHFLQYIELQKEQTWGRRQEAYS----V 128
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 148 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLLGQLPGRPARADRL-----------PLGELlPR--------------- 201
Cdd:cd12163  129 EDSVGKRVGILGYGSIGRQTARLAQALGMEVYAYTRSPRPTPESRKddgyivpgtgdPDGSI-PSawfsgtdkaslhefl 207
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 202 ---VDALTLHCPLTEDTRGMLGAAELALM-KPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNGNPLLa 277
Cdd:cd12163  208 rqdLDLLVVSLPLTPATKHLLGAEEFEILaKRKTFVSNIARGSLVDTDALVAALESGQIRGAALDVTDPEPLPADHPLW- 286
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 489185498 278 pDIPRLIVTPHNAWGSREARQRIVGQLAENAEAWKAGRAL 317
Cdd:cd12163  287 -SAPNVIITPHVSWQTQEYFDRALDVLEENLERLRKGEPL 325
GDH_like_2 cd12164
Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy ...
195-317 1.86e-27

Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family; This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240641 [Multi-domain]  Cd Length: 306  Bit Score: 108.74  E-value: 1.86e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 195 LGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNGNP 274
Cdd:cd12164  180 LDAFLAQTDILVCLLPLTPETRGILNAELLARLPRGAALINVGRGPHLVEADLLAALDSGHLSGAVLDVFEQEPLPADHP 259
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 489185498 275 LLAPdiPRLIVTPHNAwgSREARQRIVGQLAENAEAWKAGRAL 317
Cdd:cd12164  260 LWRH--PRVTVTPHIA--AITDPDSAAAQVAENIRRLEAGEPL 298
2-Hacid_dh_3 cd12160
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
52-320 6.48e-27

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240637  Cd Length: 310  Bit Score: 107.46  E-value: 6.48e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  52 VAISNKAPIDAQCIAACPELELILVSATGTNNIdLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRS 131
Cdd:cd12160   41 VVWGNSSDNLADAARRLTRLRWVQALAAGPDAV-LAAGFAPEVAVTSGRGLHDGTVAEHTLALILAAVRRLDEMREAQRE 119
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 132 GRWQQS---SQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVL-----LGQLPGRPARA-DRLPlgELLPRV 202
Cdd:cd12160  120 HRWAGElggLQPLRPAGRLTTLLGARVLIWGFGSIGQRLAPLLTALGARVTgvarsAGERAGFPVVAeDELP--ELLPET 197
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 203 DALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNGNPLLapDIPR 282
Cdd:cd12160  198 DVLVMILPATPSTAHALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEPLPASSPLW--DAPN 275
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 489185498 283 LIVTPHNAWGSREARQRIVgqlAENAEAWKAGRALRVV 320
Cdd:cd12160  276 LILTPHAAGGRPQGAEELI---AENLRAFLAGGPLRNV 310
PLN03139 PLN03139
formate dehydrogenase; Provisional
58-288 7.81e-27

formate dehydrogenase; Provisional


Pssm-ID: 178684  Cd Length: 386  Bit Score: 108.78  E-value: 7.81e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  58 APIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALATR-LPDYQQAVrSGRWQQ 136
Cdd:PLN03139 109 AYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNfLPGYHQVV-SGEWNV 187
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 137 SSqfclLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLL-GQLPGRPARADRL------PLGELLPRVDALTLHC 209
Cdd:PLN03139 188 AG----IAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYhDRLKMDPELEKETgakfeeDLDAMLPKCDVVVINT 263
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489185498 210 PLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNGNPLLApdIPRLIVTPH 288
Cdd:PLN03139 264 PLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRY--MPNHAMTPH 340
ErythrP_dh cd12158
D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains; ...
77-288 1.24e-25

D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains; D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.


Pssm-ID: 240635 [Multi-domain]  Cd Length: 343  Bit Score: 104.53  E-value: 1.24e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  77 SAT-GTNNIDLAAARERGIVVANCHGYGTPSVAQhtlalllalatrlpdYQQAVRSgRWQQSSQFCLLDFPI-------V 148
Cdd:cd12158   63 TATiGTDHIDTDYLKERGIGFANAPGCNANSVAE---------------YVLSALL-VLAQRQGFSLKGKTVgivgvgnV 126
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 149 eleGKtlgllghgelggAVARLAEAFGMRVLLGQLPgRPARADR---LPLGELLPRVDALTLHCPLTED----TRGMLGA 221
Cdd:cd12158  127 ---GS------------RLARRLEALGMNVLLCDPP-RAEAEGDpgfVSLEELLAEADIITLHVPLTRDgehpTYHLLDE 190
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489185498 222 AELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPprNGNPLLAPDIprLIVTPH 288
Cdd:cd12158  191 DFLAALKPGQILINASRGAVIDNQALLALLQRGKDLRVVLDVWENEP--EIDLELLDKV--DIATPH 253
PRK15409 PRK15409
glyoxylate/hydroxypyruvate reductase GhrB;
34-297 5.18e-23

glyoxylate/hydroxypyruvate reductase GhrB;


Pssm-ID: 185307  Cd Length: 323  Bit Score: 97.13  E-value: 5.18e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  34 LHAASQPQEVAArLHGARVAISNKAPIDAQCIAACPELELILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLA 113
Cdd:PRK15409  31 LSPETVEQHAAA-FAEAEGLLGSGEKVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMA 109
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 114 LLLALATRLPDYQQAVRSGRWQQSSQfclLDFPIVELEGKTLGLLGHGELGGAVARLAE-AFGMRVLLGQLPGRPARADR 192
Cdd:PRK15409 110 LVLSTARRVVEVAERVKAGEWTASIG---PDWFGTDVHHKTLGIVGMGRIGMALAQRAHfGFNMPILYNARRHHKEAEER 186
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 193 L-----PLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVE 267
Cdd:PRK15409 187 FnarycDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQE 266
                        250       260       270
                 ....*....|....*....|....*....|
gi 489185498 268 PPRNGNPLLApdIPRLIVTPHNAWGSREAR 297
Cdd:PRK15409 267 PLSVDSPLLS--LPNVVAVPHIGSATHETR 294
PRK00257 PRK00257
4-phosphoerythronate dehydrogenase PdxB;
80-299 7.57e-21

4-phosphoerythronate dehydrogenase PdxB;


Pssm-ID: 166874 [Multi-domain]  Cd Length: 381  Bit Score: 91.64  E-value: 7.57e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  80 GTNNIDLAAARERGIVVANCHGYGTPSVAQHTlalllalatrlpdyqqavrsgrwqQSSQFCLLDFPIVELEGKTLGLLG 159
Cdd:PRK00257  68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYV------------------------LGSLLTLAEREGVDLAERTYGVVG 123
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 160 HGELGGAVARLAEAFGMRVLLGQLP--GRPARADRLPLGELLPRVDALTLHCPLTED----TRGMLGAAELALMKPGAFL 233
Cdd:PRK00257 124 AGHVGGRLVRVLRGLGWKVLVCDPPrqEAEGDGDFVSLERILEECDVISLHTPLTKEgehpTRHLLDEAFLASLRPGAWL 203
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489185498 234 VNTARGGLVDEQALADALRGGHLGGAATDVLSVEPprNGNPLLAPDIprLIVTPHNAWGSREARQR 299
Cdd:PRK00257 204 INASRGAVVDNQALREALLSGEDLDAVLDVWEGEP--QIDLELADLC--TIATPHIAGYSLDGKAR 265
HGDH_like cd12184
(R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic ...
80-307 6.15e-20

(R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains; (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240660  Cd Length: 330  Bit Score: 88.50  E-value: 6.15e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  80 GTNNIDLAAARERGIVVANCHGYGTPSVAQ--HTLALLLALATRLPDYQQAVRsgrwqqssqfcllDFPI------VELE 151
Cdd:cd12184   78 GFNHIDLEAAKELGFKMARVPSYSPNAIAElaFTLAMTLSRHTAYTASRTANK-------------NFKVdpfmfsKEIR 144
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 152 GKTLGLLGHGELGGAVARLAEAFGMRVLLGQL-PGRPAR--ADRLPLGELLPRVDALTLHCP-LTEDTRGMLGAAELALM 227
Cdd:cd12184  145 NSTVGIIGTGRIGLTAAKLFKGLGAKVIGYDIyPSDAAKdvVTFVSLDELLKKSDIISLHVPyIKGKNDKLINKEFISKM 224
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 228 KPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNGNPLLAPDI------------PRLIVTPHNAWGSRE 295
Cdd:cd12184  225 KDGAILINTARGELQDEEAILEALESGKLAGFGTDVLNNEKEIFFKDFDGDKIedpvveklldlyPRVLLTPHIGSYTDE 304
                        250
                 ....*....|..
gi 489185498 296 ARQRIVGQLAEN 307
Cdd:cd12184  305 ALSNMIETSYEN 316
PRK08605 PRK08605
D-lactate dehydrogenase; Validated
52-319 5.93e-15

D-lactate dehydrogenase; Validated


Pssm-ID: 181499  Cd Length: 332  Bit Score: 74.40  E-value: 5.93e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  52 VAISNKAPIDAQCIAACPELEL--ILVSATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAV 129
Cdd:PRK08605  49 LSLSQQIPLSEAIYKLLNELGIkqIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKV 128
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 130 RSG--RWQQSsqfcLLDFPIVELegkTLGLLGHGELGGAVARL-AEAFGMRVLLGQLPGRPARADRL----PLGELLPRV 202
Cdd:PRK08605 129 REHdfRWEPP----ILSRSIKDL---KVAVIGTGRIGLAVAKIfAKGYGSDVVAYDPFPNAKAATYVdykdTIEEAVEGA 201
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 203 DALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEP---PRN------GN 273
Cdd:PRK08605 202 DIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERplfPSDqrgqtiND 281
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 489185498 274 PLLAPDI--PRLIVTPHNAWGSREA-RQRIVGQLAENAEAWKAGRA-LRV 319
Cdd:PRK08605 282 PLLESLInrEDVILTPHIAFYTDAAvKNLIVDALDATLEVLQTGTTrLRV 331
PRK06436 PRK06436
2-hydroxyacid dehydrogenase;
78-320 5.94e-15

2-hydroxyacid dehydrogenase;


Pssm-ID: 235800 [Multi-domain]  Cd Length: 303  Bit Score: 74.15  E-value: 5.94e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  78 ATGTNNIDLAAARERGIVVANCHGYGTPsVAQHTLALLLALATRLPDYQQAVRSGRWQQSsqfclldfPIVELEGKTLGL 157
Cdd:PRK06436  57 SAGVDHIDVSGIPENVVLCSNAGAYSIS-VAEHAFALLLAWAKNICENNYNMKNGNFKQS--------PTKLLYNKSLGI 127
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 158 LGHGELGGAVARLAEAFGMRVLLGQLPGRPARADRLPL--GELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVN 235
Cdd:PRK06436 128 LGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMepEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIIN 207
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 236 TARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNGNpllapDIPRLIVTPHNAWG-SREARQRIVGQLAENAEAWKAG 314
Cdd:PRK06436 208 VARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET-----NPDNVILSPHVAGGmSGEIMQPAVALAFENIKNFFEG 282

                 ....*.
gi 489185498 315 RALRVV 320
Cdd:PRK06436 283 KPKNIV 288
PRK12480 PRK12480
D-lactate dehydrogenase; Provisional
80-323 1.67e-14

D-lactate dehydrogenase; Provisional


Pssm-ID: 183550  Cd Length: 330  Bit Score: 73.02  E-value: 1.67e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  80 GTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQSSQfcLLDFPIVELegkTLGLLG 159
Cdd:PRK12480  79 GFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAE--IMSKPVKNM---TVAIIG 153
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 160 HGELGGAVARLAEAFGMRVLlgqlpGRPARAD--------RLPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGA 231
Cdd:PRK12480 154 TGRIGAATAKIYAGFGATIT-----AYDAYPNkdldfltyKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGA 228
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 232 FLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPR-----NGNPLLAPDIPRLI------VTPHNAWGSREARQRI 300
Cdd:PRK12480 229 ILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYftndwTNKDIDDKTLLELIeherilVTPHIAFFSDEAVQNL 308
                        250       260
                 ....*....|....*....|....
gi 489185498 301 V-GQLaeNAeawkagrALRVVNAG 323
Cdd:PRK12480 309 VeGGL--NA-------ALSVINTG 323
PLN02306 PLN02306
hydroxypyruvate reductase
78-307 7.17e-14

hydroxypyruvate reductase


Pssm-ID: 177941  Cd Length: 386  Bit Score: 71.43  E-value: 7.17e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  78 ATGTNNIDLAAARERGIVVANCHGYGTPSVAQHTLALLLALATRLPDYQQAVRSGRWQQssqfcLLDFPIVE--LEGKTL 155
Cdd:PLN02306  94 AVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEG-----WLPHLFVGnlLKGQTV 168
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 156 GLLGHGELGGAVARL-AEAFGMRVLL-----------------------GQLPGRPARADRLPlgELLPRVDALTLHCPL 211
Cdd:PLN02306 169 GVIGAGRIGSAYARMmVEGFKMNLIYydlyqstrlekfvtaygqflkanGEQPVTWKRASSME--EVLREADVISLHPVL 246
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 212 TEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRngNPLLApDIPRLIVTPHNAW 291
Cdd:PLN02306 247 DKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYM--KPGLA-DMKNAVVVPHIAS 323
                        250
                 ....*....|....*.
gi 489185498 292 GSREARQRIVGQLAEN 307
Cdd:PLN02306 324 ASKWTREGMATLAALN 339
2-Hacid_dh_9 cd12170
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
27-309 1.20e-13

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240647 [Multi-domain]  Cd Length: 294  Bit Score: 70.02  E-value: 1.20e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  27 AAFDELQLHAA------SQPQ---EVAARLHGAR-VAISNKAPIDAQCIAACPELELI-----LVSATGTNnIDLAAARE 91
Cdd:cd12170   15 EAEEELKKYAEevvfydDIPEsdeEIIERIGDADcVLVSYTTQIDEEVLEACPNIKYIgmccsLYSEESAN-VDIAAARE 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  92 RGIVVANCHGYGTPSVAQHTlalllalATRLPDYQQAVRSGRWQqssqfcllDFPiVELEGKTLGLLGHGELGGAVARLA 171
Cdd:cd12170   94 NGITVTGIRDYGDEGVVEYV-------ISELIRLLHGFGGKQWK--------EEP-RELTGLKVGIIGLGTTGQMIADAL 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 172 EAFGMRVllgQLPGRPARADR-------LPLGELLPRVDALTLHcpLTEDTRgMLGAAELALMKPGAFLVNTARGGLVDE 244
Cdd:cd12170  158 SFFGADV---YYYSRTRKPDAeakgiryLPLNELLKTVDVICTC--LPKNVI-LLGEEEFELLGDGKILFNTSLGPSFEV 231
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489185498 245 QALADALRGG---HLGGAATDVLSVEpprngnPLLapDIPRLIVTPHNAWGSREARQRIVGQLAENAE 309
Cdd:cd12170  232 EALKKWLKASgynIFDCDTAGALGDE------ELL--RYPNVICTNKSAGWTRQAFERLSQKVLANLE 291
PRK15438 PRK15438
erythronate-4-phosphate dehydrogenase PdxB; Provisional
168-319 6.10e-11

erythronate-4-phosphate dehydrogenase PdxB; Provisional


Pssm-ID: 185335 [Multi-domain]  Cd Length: 378  Bit Score: 62.62  E-value: 6.10e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 168 ARLaEAFGMRVLLGQlpgrPARADR------LPLGELLPRVDALTLHCPLTED----TRGMLGAAELALMKPGAFLVNTA 237
Cdd:PRK15438 133 ARL-EALGIKTLLCD----PPRADRgdegdfRSLDELVQEADILTFHTPLFKDgpykTLHLADEKLIRSLKPGAILINAC 207
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 238 RGGLVDEQALADALRGGHLGGAATDVLSVEPPRNGNPLLAPDIPrlivTPHNAWGSREARQRIVGQLAENAEAWkAGRAL 317
Cdd:PRK15438 208 RGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVDIG----TPHIAGYTLEGKARGTTQVFEAYSKF-IGHEQ 282

                 ..
gi 489185498 318 RV 319
Cdd:PRK15438 283 HV 284
ghrA PRK15469
glyoxylate/hydroxypyruvate reductase GhrA;
121-296 6.27e-10

glyoxylate/hydroxypyruvate reductase GhrA;


Pssm-ID: 185366  Cd Length: 312  Bit Score: 59.43  E-value: 6.27e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 121 RLPDYQQAVRSGRWQQSSQFCLLDFPIVELEGKTLGllghgelggavARLAEA-----FGMRVL---LGQLPGRPARADR 192
Cdd:PRK15469 113 RFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLG-----------SKVAQSlqtwgFPLRCWsrsRKSWPGVQSFAGR 181
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 193 LPLGELLPRVDALTLHCPLTEDTRGMLGAAELALMKPGAFLVNTARGGLVDEQALADALRGGHLGGAATDVLSVEPPRNG 272
Cdd:PRK15469 182 EELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPE 261
                        170       180
                 ....*....|....*....|....
gi 489185498 273 NPLLAPdiPRLIVTPHNAWGSREA 296
Cdd:PRK15469 262 SPLWQH--PRVAITPHVAAVTRPA 283
FDH_GDH_like cd12154
Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related ...
10-277 7.17e-08

Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases; The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases.


Pssm-ID: 240631 [Multi-domain]  Cd Length: 310  Bit Score: 53.00  E-value: 7.17e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  10 LDHASLDLGDLDMRPLRAAFDELQLHAASQPQEVAARLHGARVAISNKAPIDAQciaacpeLELILVSATGTNNIDLA-A 88
Cdd:cd12154   34 ETGAGIGAGFADQAYVQAGAIVVTLAKALWSLDVVLKVKEPLTNAEYALIQKLG-------DRLLFTYTIGADHRDLTeA 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498  89 ARERGIVVANCHGYGTPSVAQHTLALLlalatrlpdyQQAVRSGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVA 168
Cdd:cd12154  107 LARAGLTAIAVEGVELPLLTSNSIGAG----------ELSVQFIARFLEVQQPGRLGGAPDVAGKTVVVVGAGVVGKEAA 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489185498 169 RLAEAFGMRVLLGQLPgrpaRADRLPLGEL-----------LPRVDALTLHCPLTEDTRGMLGAAEL-ALMKPGAFLVNT 236
Cdd:cd12154  177 QMLRGLGAQVLITDIN----VEALEQLEELggknveeleeaLAEADVIVTTTLLPGKRAGILVPEELvEQMKPGSVIVNV 252
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 489185498 237 ARGGLVDEQAL-ADALRGGHLGGAATDVLSVEP-PRNGNPLLA 277
Cdd:cd12154  253 AVGAVGCVQALhTQLLEEGHGVVHYGDVNMPGPgCAMGVPWDA 295
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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