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Conserved domains on  [gi|489190163|ref|WP_003099535|]
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MULTISPECIES: ABC transporter permease [Pseudomonas]

Protein Classification

ABC transporter permease( domain architecture ID 11439530)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0016020
PubMed:  18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 39-270 1.84e-85

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


:

Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 256.19  E-value: 1.84e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  39 SFNSGTFLVYPLQGFSLRWYADFFQSAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVP 118
Cdd:COG1177   31 SFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVP 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 119 VVIIGVASYLFFAPLGLGNSYLSLIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVIS 198
Cdd:COG1177  111 GIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILA 190

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489190163 199 GALFAFATSFDEVVVTLFLAGPEQATLPRQMFSGIRENLSPTIAAAATLLIGFSVLLLLTLEWLRGRSEKMR 270
Cdd:COG1177  191 GALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLILLSLLLLLLAERLRRRGERRR 262
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 39-270 1.84e-85

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 256.19  E-value: 1.84e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  39 SFNSGTFLVYPLQGFSLRWYADFFQSAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVP 118
Cdd:COG1177   31 SFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVP 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 119 VVIIGVASYLFFAPLGLGNSYLSLIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVIS 198
Cdd:COG1177  111 GIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILA 190

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489190163 199 GALFAFATSFDEVVVTLFLAGPEQATLPRQMFSGIRENLSPTIAAAATLLIGFSVLLLLTLEWLRGRSEKMR 270
Cdd:COG1177  191 GALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLILLSLLLLLLAERLRRRGERRR 262
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 39-253 1.55e-43

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 148.59  E-value: 1.55e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  39 SFNSGTFlVYPLQGFSLRWYADFFQSAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVP 118
Cdd:PRK09500  28 SFNSSRF-GINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSP 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 119 VVIIGVASYLFFAPLGLGNSYLSLIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVIS 198
Cdd:PRK09500 107 DIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAA 186

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489190163 199 GALFAFATSFDEVVVTLFLAGPEQATLPRQMFSGIRENLSPTIAAAATLLIGFSV 253
Cdd:PRK09500 187 GWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSL 241
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 74-249 1.17e-24

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 97.70  E-value: 1.17e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163   74 SMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVASYLFFAPLGLGNSYLSL----------- 142
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELfgislvftftg 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  143 -IVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGP- 220
Cdd:TIGR02141  83 aVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAGNi 162

                         170       180       190
                  ....*....|....*....|....*....|.
gi 489190163  221 --EQATLPRQMFSGIRENLSPTIAAAATLLI 249
Cdd:TIGR02141 163 pgETQTIPLAIYDAVESDYELAHQLSLVLLA 193
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 71-253 6.01e-18

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 79.63  E-value: 6.01e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  71 LTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVASYLFFAPLGLGNSYLSL----IVVH 146
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLglpaLILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 147 AVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGPEQATLP 226
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*..
gi 489190163 227 RQMFSGIRENLSPTIAAAATLLIGFSV 253
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLL 187
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 85-253 4.19e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 57.69  E-value: 4.19e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163   85 AMVFGTLAAIGLTRgefRGKALVMSLMISPMVVPVVIIGVASYLFFAPLGLGNSYLSLIVVHAVLGVPFVIITVSATLQG 164
Cdd:pfam00528   1 GIPLGIIAALRRGR---RLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRS 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  165 FNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGPE---QATLPRQMFSGIRENLSPTI 241
Cdd:pfam00528  78 LPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPglgLLLIEAILGYDYPEIQGPVL 157

                         170
                  ....*....|..
gi 489190163  242 AAAATLLIGFSV 253
Cdd:pfam00528 158 AAALILLLLNLL 169
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 74-185 1.78e-05

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 44.46  E-value: 1.78e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  74 SMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVASYLFFA---PLGlgnsYLSL-------I 143
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSrsgPLG----FLGLlytptamI 76

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 489190163 144 VVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFF 185
Cdd:NF038017  77 IAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALW 118
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 39-270 1.84e-85

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 256.19  E-value: 1.84e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  39 SFNSGTFLVYPLQGFSLRWYADFFQSAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVP 118
Cdd:COG1177   31 SFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVP 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 119 VVIIGVASYLFFAPLGLGNSYLSLIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVIS 198
Cdd:COG1177  111 GIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILA 190

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489190163 199 GALFAFATSFDEVVVTLFLAGPEQATLPRQMFSGIRENLSPTIAAAATLLIGFSVLLLLTLEWLRGRSEKMR 270
Cdd:COG1177  191 GALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLILLSLLLLLLAERLRRRGERRR 262
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 39-253 1.55e-43

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 148.59  E-value: 1.55e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  39 SFNSGTFlVYPLQGFSLRWYADFFQSAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVP 118
Cdd:PRK09500  28 SFNSSRF-GINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSP 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 119 VVIIGVASYLFFAPLGLGNSYLSLIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVIS 198
Cdd:PRK09500 107 DIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAA 186

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489190163 199 GALFAFATSFDEVVVTLFLAGPEQATLPRQMFSGIRENLSPTIAAAATLLIGFSV 253
Cdd:PRK09500 187 GWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSL 241
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 39-270 1.33e-34

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 126.12  E-value: 1.33e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  39 SFNSGTfLVYPLQGFSLRWYADFFQSAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTR-GEFRGKALVMSLMISPMVV 117
Cdd:PRK10592  34 SFNSSK-LVTVWAGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRfGRFRGSNGFAFMITAPLVM 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 118 PVVIIGVASYLFFAPLGLGNSY------LSLIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPL 191
Cdd:PRK10592 113 PDVITGLSLLLLFVALAHAIGWpadrgmLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPM 192

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489190163 192 IAPGVISGALFAFATSFDEVVVTLFLAGPEQATLPRQMFSGIRENLSPTIAAAATLLIGFSVLLLLTLEWLRGRSEKMR 270
Cdd:PRK10592 193 IMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINALATLILGVVGIVGFIAWYLMARAEKQR 271
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
44-266 1.26e-33

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 127.97  E-value: 1.26e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  44 TFLVYPLQGFSLRWYADFFQSAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIG 123
Cdd:COG1178  313 SLTKALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLG 392

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 124 VASYLFFA---PLGLGNSYLSLIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGA 200
Cdd:COG1178  393 LGLLLLFNrplPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAA 472

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489190163 201 LFAFATSFDEVVVTLFLAGPEQATLPRQMFSGIRENLSPTIAAAATLLIGFSVLLLLTLEWLRGRS 266
Cdd:COG1178  473 LLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLLVLVSLLPVLLLERLLGRR 538
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 51-249 2.24e-31

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 117.50  E-value: 2.24e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  51 QGFSLRWYADFFQSAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVASYLFF 130
Cdd:COG0395   56 SEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLF 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 131 APLGLGNSYLSLIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGALFAFATSFDE 210
Cdd:COG0395  136 RQLGLLNTYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWND 215

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 489190163 211 VVVTL-FLAGPEQATLPR--QMFSGIRENLSPTIAAAATLLI 249
Cdd:COG0395  216 FLWPLiLLTSPDLRTLPVglASFQGQYGTDWGLLMAAAVIAT 257
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 39-270 5.79e-30

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 113.70  E-value: 5.79e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  39 SFNSGTFLVYPLQGFSLRWYADFFQSAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVP 118
Cdd:COG1176   37 SFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTS 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 119 VVIIGVASYLFFA-----------------PLGLGNSYLSLIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPL 181
Cdd:COG1176  117 FLVRTYAWIVLLGrngllnslllalglidePLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPW 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 182 TTFFRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGPEQATLPRQMFSGIRENLSPTIAAA-ATLLIGFSVLLLLTLE 260
Cdd:COG1176  197 QTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALNWPLAAAlAVVLLLIVLLVLLLYL 276

                        250
                 ....*....|
gi 489190163 261 WLRGRSEKMR 270
Cdd:COG1176  277 RLLRRRRLLG 286
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 45-219 1.19e-27

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 107.14  E-value: 1.19e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  45 FLVYPL-----QGFSLRW--YADFFQSAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVV 117
Cdd:COG0555   23 IVLLPLaalvlKAAGLGWaeFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFAL 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 118 PVVIIGVASYLFFAPLGLGNSYLSLI---VVHAVLGV---------PFVIITVSATLQGFNYNLVRAAASLGAPPLTTFF 185
Cdd:COG0555  103 PTAVAGIALLLLFGPNGWLGQLLAPLgikVAFTPLGIvlaqtfvslPFVVRTVQPVLEELDPELEEAAATLGASRWQTFR 182

                        170       180       190
                 ....*....|....*....|....*....|....
gi 489190163 186 RVTLPLIAPGVISGALFAFATSFDEVVVTLFLAG 219
Cdd:COG0555  183 RVILPLLLPALLTGFALAFARALGEFGAVIFIAG 216
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 64-219 2.27e-26

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 102.82  E-value: 2.27e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  64 SAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVASYLFFAPLGLGNSYLS-- 141
Cdd:COG4149    2 SPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEel 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 142 -----------LIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGALFAFATSFDE 210
Cdd:COG4149   82 fgislvftwtgAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGE 161


                 ....*....
gi 489190163 211 VVVTLFLAG 219
Cdd:COG4149  162 FGATLMFAG 170
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
45-265 3.70e-25

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 104.09  E-value: 3.70e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  45 FLVYPL-----QGFS--LRWYADFFQSAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVV 117
Cdd:COG1178   23 LVLLPLlalllRAFTdgLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLAL 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 118 PVVIIGVASYLFFAPLGLGNSYLS---------------LIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLT 182
Cdd:COG1178  103 PPYVVALAWIALFGPNGLLNTLLRalfgleppdiyglggIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWR 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 183 TFFRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGPEQaTLPRQMFSGIRENLSPTIAAA-ATLLIGFSVLLLLTLEW 261
Cdd:COG1178  183 AFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYT-TLTTAIYQAWLGDFDLGAAAAlALVLLLLVLLLLLLERR 261


                 ....
gi 489190163 262 LRGR 265
Cdd:COG1178  262 LRRR 265
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 74-249 1.17e-24

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 97.70  E-value: 1.17e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163   74 SMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVASYLFFAPLGLGNSYLSL----------- 142
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELfgislvftftg 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  143 -IVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGP- 220
Cdd:TIGR02141  83 aVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAGNi 162

                         170       180       190
                  ....*....|....*....|....*....|.
gi 489190163  221 --EQATLPRQMFSGIRENLSPTIAAAATLLI 249
Cdd:TIGR02141 163 pgETQTIPLAIYDAVESDYELAHQLSLVLLA 193
modB PRK09421
molybdate ABC transporter permease subunit;
74-253 3.42e-19

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 83.82  E-value: 3.42e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  74 SMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVASYLFFAPLGLGNSYLS------------ 141
Cdd:PRK09421  14 SLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYewfgisfafswr 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 142 -LIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGALFAFATSFDEVVVTL-FLAG 219
Cdd:PRK09421  94 gAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGATItFVSN 173

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 489190163 220 --PEQATLPRQMFSGIRenlSPTIAAAATLLIGFSV 253
Cdd:PRK09421 174 ipGETQTIPSAMYTLIQ---TPGGESAAARLCIISI 206
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 71-253 6.01e-18

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 79.63  E-value: 6.01e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  71 LTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVASYLFFAPLGLGNSYLSL----IVVH 146
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLglpaLILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 147 AVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGPEQATLP 226
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*..
gi 489190163 227 RQMFSGIRENLSPTIAAAATLLIGFSV 253
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLL 187
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
55-224 2.49e-17

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 79.79  E-value: 2.49e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  55 LRWYADFFQSAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGeFRGKALVMSLMISPMVVPVVIIGVASYLFFAP-L 133
Cdd:COG1175   62 LDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRK-LRGRGFFRTLFFLPWVISPVVVALIWKWLFNPdY 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 134 GLGNSYL-------------------SLIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAP 194
Cdd:COG1175  141 GLLNALLgalglepinwlgdpslalpAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRP 220

                        170       180       190
                 ....*....|....*....|....*....|...
gi 489190163 195 GVISGALFAFATS---FDEVVVtLFLAGPEQAT 224
Cdd:COG1175  221 TILFVLVLSTIGAlqvFDLVYV-LTGGGPGNST 252
cysT CHL00187
sulfate transport protein; Provisional
 51-210 1.18e-15

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 74.28  E-value: 1.18e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  51 QGFSLRWYADFFQSAEWMRSLTNSMivAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVASYLFF 130
Cdd:CHL00187  39 QPWSDFLQKATEPIALSAYSLTLSM--ALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVY 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 131 APLGLGNSYLS---LIVVHAVLGV---------PFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVIS 198
Cdd:CHL00187 117 GDNGWIGHLLShlgIQIVFTKLGVllamifvsfPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLT 196

                        170
                 ....*....|..
gi 489190163 199 GALFAFATSFDE 210
Cdd:CHL00187 197 GLALTFSRAIGE 208
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 74-253 6.11e-15

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 72.77  E-value: 6.11e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163   74 SMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVASYL----------FFAPLGLG--NSYLS 141
Cdd:TIGR00969  65 TLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALlygsngwlgsWLASFGIQiiFTWPG 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  142 LIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGALFAFATSFDE----VVVTLFL 217
Cdd:TIGR00969 145 MALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEfgavVVVSGNI 224

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 489190163  218 AGPEQaTLPRQMFSGIRENLSPTIAAAATLLIGFSV 253
Cdd:TIGR00969 225 PGKTL-TLPLLIEERLEQYDYPGAYVIAAVLLLVSL 259
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
46-219 1.33e-13

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 69.01  E-value: 1.33e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  46 LVYPLQGFSLRWYADFFQSAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVA 125
Cdd:PRK10971  35 LVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLT 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 126 SYLFFAPLG------------LGNSYLSLIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIA 193
Cdd:PRK10971 115 LASLFSVNGwygewlakfdikVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELS 194

                        170       180
                 ....*....|....*....|....*.
gi 489190163 194 PGVISGALFAFATSFDEVVVTLFLAG 219
Cdd:PRK10971 195 PALLAGVALSFTRSLGEFGAVIFIAG 220
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 71-225 4.37e-11

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 62.97  E-value: 4.37e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  71 LTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVASYLFFAPLGLGNSYLSLIVVHAVLG 150
Cdd:COG4135  358 LGNTLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLVPQIAFLFGLQVLLLRLGLDGTWLAVIWAHLVFV 437

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489190163 151 VPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGPEQATL 225
Cdd:COG4135  438 LPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFAVSVAQYLPTLLIGAGRVATL 512
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 85-253 4.19e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 57.69  E-value: 4.19e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163   85 AMVFGTLAAIGLTRgefRGKALVMSLMISPMVVPVVIIGVASYLFFAPLGLGNSYLSLIVVHAVLGVPFVIITVSATLQG 164
Cdd:pfam00528   1 GIPLGIIAALRRGR---RLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRS 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  165 FNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGPE---QATLPRQMFSGIRENLSPTI 241
Cdd:pfam00528  78 LPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPglgLLLIEAILGYDYPEIQGPVL 157

                         170
                  ....*....|..
gi 489190163  242 AAAATLLIGFSV 253
Cdd:pfam00528 158 AAALILLLLNLL 169
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 43-253 3.70e-09

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 56.17  E-value: 3.70e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  43 GTFLVYPL-----------QGFSLRWYADFFQSAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLM 111
Cdd:PRK15050  36 APLVVYPLvrvvlqsltgeHGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFI 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 112 ISPMVVPVVIIGVASYLFFAPLGLGNSYLS------------------LIVVHAVLGVPFVIITVSATLQGFNYNLVRAA 173
Cdd:PRK15050 116 DTFVAFPSFLITLAFTFLYGSAGSVNIALQrlfgleappldflyspggVILAEITFYTPFVVRPLLAAFAQLDARQLEAA 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 174 ASLGAPPLTTFFRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGPEQATLPRQMFS-GIRENLSPTIAAAATLLIGFS 252
Cdd:PRK15050 196 ASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVLIYSkAIVDFDYPTACAIAVVNLALS 275


                 .
gi 489190163 253 V 253
Cdd:PRK15050 276 L 276
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 58-208 9.05e-09

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 55.84  E-value: 9.05e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163   58 YADFFQSAEWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVASYLFFAPLGLGN 137
Cdd:TIGR03262  43 FAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLK 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  138 SYLSLIVVHAVLGV---------PFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGALFAFATSF 208
Cdd:TIGR03262 123 GLLGGFSIYGFWGIvigevfytfPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVI 202
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 144-249 9.94e-09

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 55.10  E-value: 9.94e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 144 VVHAVLgvPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGPEQA 223
Cdd:PRK10683 191 IVYAYL--PFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSI 268

                         90       100
                 ....*....|....*....|....*.
gi 489190163 224 TLPRQMFSGIRENLSPTIAAAATLLI 249
Cdd:PRK10683 269 MIGRVLWQEFFNNRDWPVASAVAIIM 294
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 73-221 1.19e-07

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 52.38  E-value: 1.19e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163   73 NSMIVAPAATLL--AMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVASYLFFA----PL-GLGNSYLSLIVV 145
Cdd:TIGR03262 336 NSLRLAATTALIgtILVFGGAYLIEKTRGFGLLRGVLRFLAILPMAVPGLVLGLGYIFFFNaptnPLnGLYGTMALLVLC 415

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489190163  146 HAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGPE 221
Cdd:TIGR03262 416 TVVHFYTVSHLTAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFLYSPD 491
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 74-185 1.78e-05

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 44.46  E-value: 1.78e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  74 SMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVASYLFFA---PLGlgnsYLSL-------I 143
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSrsgPLG----FLGLlytptamI 76

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 489190163 144 VVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFF 185
Cdd:NF038017  77 IAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALW 118
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 53-204 1.90e-05

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 45.06  E-value: 1.90e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  53 FSLRWYADFFQSAeWMRSLTNSMIVAPAATLLAMVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVI--------IGV 124
Cdd:PRK09497  48 FTLDNYTRLLDPL-YAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIriyglkifLST 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 125 ASYL---------FFAPLGLGNSYLSLIVVHAVLGVPFVIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPG 195
Cdd:PRK09497 127 KGYLnefllwlgvIDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPG 206


                 ....*....
gi 489190163 196 VISGALFAF 204
Cdd:PRK09497 207 IIAGCLLVL 215
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
86-229 2.88e-04

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 41.66  E-value: 2.88e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163  86 MVFGTLAAIGLTRGEFRGKALVMSLMISPMVVPVVIIGVASYLFFAPLGLGNSYLS------------LIVVHAVLGVPF 153
Cdd:PRK11602  81 LVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDehnlqlmfswpgMVLVTIFVTCPF 160

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489190163 154 VIITVSATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLIAPGVISGALFAFATSFDEVVVTLFLAGP---EQATLPRQM 229
Cdd:PRK11602 161 VVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSirgETLSLPLQI 239
malF PRK10999
maltose ABC transporter permease MalF;
100-204 2.18e-03

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 39.17  E-value: 2.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489190163 100 EFRGKALVMSLMISPMVVPVVI-IGVASYLFFAPLGLGNSYLS-------------------LIVVHAVLGVPFVIITVS 159
Cdd:PRK10999 316 ALKGKAVYRVLLILPYAVPSFIsILIFKGLFNQSFGEINMMLSalfgikpawfsdptlaktmILIVNTWLGYPYMMILCM 395

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 489190163 160 ATLQGFNYNLVRAAASLGAPPLTTFFRVTLPLI----APGVIsgALFAF 204
Cdd:PRK10999 396 GLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLikplTPLMI--ASFAF 442
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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