|
Name |
Accession |
Description |
Interval |
E-value |
| RsmD |
COG0742 |
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
18-198 |
2.78e-88 |
|
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 440505 [Multi-domain] Cd Length: 183 Bit Score: 256.93 E-value: 2.78e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 18 LRIIGGEWRSRRFVFPDGPGLRPTPDRVRETLFNWLAPYVEGARVLDPFAGSGALFLEALSRGAREGLALDTNGEAVAAL 97
Cdd:COG0742 1 MRIIGGKARGRKLKVPKGPGTRPTTDRVREALFNILGPDIEGARVLDLFAGSGALGLEALSRGAASVVFVEKDRKAAAVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 98 RNHLDALKC-GTAQLVLGDAVRYLGNQAPSAFDLVFLDPPFHQNLLQDACRLLETRGWLNPDAWIYTESESVPSSLGLPG 176
Cdd:COG0742 81 RKNLEKLGLeDRARVIRGDALRFLKRLAGEPFDLVFLDPPYAKGLLEKALELLAENGLLAPGGLIVVEHSKREELPELPA 160
|
170 180
....*....|....*....|..
gi 489193531 177 NWRLHREKKAGNVHYALWQRGA 198
Cdd:COG0742 161 GLELLKERKYGDTRLSFYRREE 182
|
|
| Cons_hypoth95 |
pfam03602 |
Conserved hypothetical protein 95; |
18-195 |
1.65e-87 |
|
Conserved hypothetical protein 95;
Pssm-ID: 427391 [Multi-domain] Cd Length: 179 Bit Score: 254.86 E-value: 1.65e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 18 LRIIGGEWRSRRFVFPDGPGLRPTPDRVRETLFNWLAPYVEGARVLDPFAGSGALFLEALSRGAREGLALDTNGEAVAAL 97
Cdd:pfam03602 1 MRIIGGKARGRKLKVPPGPGTRPTTDRVREALFNWLAPYIEGARVLDLFAGSGALGLEALSRGAKRVTLVEKDKRAVQIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 98 RNHLDALKCGTAQLVLGDAVRYLGN-QAPSAFDLVFLDPPFHQNLLQDACRLLETRGWLNPDAWIYTESESVPSSLGLPG 176
Cdd:pfam03602 81 KENLQLLGLPGAVLVMDALLALLRLaGKGPVFDIVFLDPPYAKGLIEEVLDLLAEKGWLKPNALIYVETEKRGELPEQPG 160
|
170
....*....|....*....
gi 489193531 177 NWRLHREKKAGNVHYALWQ 195
Cdd:pfam03602 161 NLELVREKKYGQTTLAFYQ 179
|
|
| rsmD |
PRK10909 |
16S rRNA m(2)G966-methyltransferase; Provisional |
5-198 |
8.08e-76 |
|
16S rRNA m(2)G966-methyltransferase; Provisional
Pssm-ID: 236793 Cd Length: 199 Bit Score: 226.14 E-value: 8.08e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 5 TAKAPgRHGGQGQLRIIGGEWRSRRFVFPDGPGLRPTPDRVRETLFNWLAPYVEGARVLDPFAGSGALFLEALSRGAREG 84
Cdd:PRK10909 1 MMKKP-NHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 85 LALDTNGEAVAALRNHLDALKCGTAQLVLGDAVRYLgNQAPSAFDLVFLDPPFHQNLLQDACRLLETRGWLNPDAWIYTE 164
Cdd:PRK10909 80 TLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL-AQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE 158
|
170 180 190
....*....|....*....|....*....|....
gi 489193531 165 SESVPSSLGLPGNWRLHREKKAGNVHYALWQRGA 198
Cdd:PRK10909 159 SEVENGLPTVPANWQLHREKVAGQVAYRLYIREA 192
|
|
| TIGR00095 |
TIGR00095 |
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of ... |
12-195 |
2.71e-58 |
|
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 188022 [Multi-domain] Cd Length: 190 Bit Score: 181.45 E-value: 2.71e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 12 HGGQGQLRIIGGEWRSRRFVFPDGPGLRPTPDRVRETLFNWLAPYVEGARVLDPFAGSGALFLEALSRGAREGLALDTNG 91
Cdd:TIGR00095 4 HSGSGKIRIIGGQYRGRKLKVPPGPSTRPTTDRVRESLFNILRPDIVGAHFLDLFAGSGALGLEALSRGAASAVFVEQDR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 92 EAVAALRNHLDALKC-GTAQLVLGDAVRYLGNQAP--SAFDLVFLDPPFHQNLLQDACRLLETRGWLNPDAWIYTESESV 168
Cdd:TIGR00095 84 KVAQTLKENLSTLKKsGEQATVLNDAVRALLFLAKkqTPFDIIYLDPPFNRGLLEALLELLGENKWLNPKGLIVVEYDRE 163
|
170 180
....*....|....*....|....*..
gi 489193531 169 PSSLGLPGNWRLHREKKAGNVHYALWQ 195
Cdd:TIGR00095 164 NELPTVPETWSLLRQKVYGQSALRLYQ 190
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
61-155 |
8.48e-11 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 56.67 E-value: 8.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 61 RVLDPFAGSGALFLEALSRGAREGLALDTNGEAVAALRNHLDALKCGTAQLVLGDAvRYLGNQAPSAFDLVFLDPPFH-- 138
Cdd:cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDA-EELPPEADESFDVIISDPPLHhl 79
|
90 100
....*....|....*....|.
gi 489193531 139 ----QNLLQDACRLLETRGWL 155
Cdd:cd02440 80 vedlARFLEEARRLLKPGGVL 100
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RsmD |
COG0742 |
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
18-198 |
2.78e-88 |
|
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 440505 [Multi-domain] Cd Length: 183 Bit Score: 256.93 E-value: 2.78e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 18 LRIIGGEWRSRRFVFPDGPGLRPTPDRVRETLFNWLAPYVEGARVLDPFAGSGALFLEALSRGAREGLALDTNGEAVAAL 97
Cdd:COG0742 1 MRIIGGKARGRKLKVPKGPGTRPTTDRVREALFNILGPDIEGARVLDLFAGSGALGLEALSRGAASVVFVEKDRKAAAVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 98 RNHLDALKC-GTAQLVLGDAVRYLGNQAPSAFDLVFLDPPFHQNLLQDACRLLETRGWLNPDAWIYTESESVPSSLGLPG 176
Cdd:COG0742 81 RKNLEKLGLeDRARVIRGDALRFLKRLAGEPFDLVFLDPPYAKGLLEKALELLAENGLLAPGGLIVVEHSKREELPELPA 160
|
170 180
....*....|....*....|..
gi 489193531 177 NWRLHREKKAGNVHYALWQRGA 198
Cdd:COG0742 161 GLELLKERKYGDTRLSFYRREE 182
|
|
| Cons_hypoth95 |
pfam03602 |
Conserved hypothetical protein 95; |
18-195 |
1.65e-87 |
|
Conserved hypothetical protein 95;
Pssm-ID: 427391 [Multi-domain] Cd Length: 179 Bit Score: 254.86 E-value: 1.65e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 18 LRIIGGEWRSRRFVFPDGPGLRPTPDRVRETLFNWLAPYVEGARVLDPFAGSGALFLEALSRGAREGLALDTNGEAVAAL 97
Cdd:pfam03602 1 MRIIGGKARGRKLKVPPGPGTRPTTDRVREALFNWLAPYIEGARVLDLFAGSGALGLEALSRGAKRVTLVEKDKRAVQIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 98 RNHLDALKCGTAQLVLGDAVRYLGN-QAPSAFDLVFLDPPFHQNLLQDACRLLETRGWLNPDAWIYTESESVPSSLGLPG 176
Cdd:pfam03602 81 KENLQLLGLPGAVLVMDALLALLRLaGKGPVFDIVFLDPPYAKGLIEEVLDLLAEKGWLKPNALIYVETEKRGELPEQPG 160
|
170
....*....|....*....
gi 489193531 177 NWRLHREKKAGNVHYALWQ 195
Cdd:pfam03602 161 NLELVREKKYGQTTLAFYQ 179
|
|
| rsmD |
PRK10909 |
16S rRNA m(2)G966-methyltransferase; Provisional |
5-198 |
8.08e-76 |
|
16S rRNA m(2)G966-methyltransferase; Provisional
Pssm-ID: 236793 Cd Length: 199 Bit Score: 226.14 E-value: 8.08e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 5 TAKAPgRHGGQGQLRIIGGEWRSRRFVFPDGPGLRPTPDRVRETLFNWLAPYVEGARVLDPFAGSGALFLEALSRGAREG 84
Cdd:PRK10909 1 MMKKP-NHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 85 LALDTNGEAVAALRNHLDALKCGTAQLVLGDAVRYLgNQAPSAFDLVFLDPPFHQNLLQDACRLLETRGWLNPDAWIYTE 164
Cdd:PRK10909 80 TLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL-AQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE 158
|
170 180 190
....*....|....*....|....*....|....
gi 489193531 165 SESVPSSLGLPGNWRLHREKKAGNVHYALWQRGA 198
Cdd:PRK10909 159 SEVENGLPTVPANWQLHREKVAGQVAYRLYIREA 192
|
|
| TIGR00095 |
TIGR00095 |
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of ... |
12-195 |
2.71e-58 |
|
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 188022 [Multi-domain] Cd Length: 190 Bit Score: 181.45 E-value: 2.71e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 12 HGGQGQLRIIGGEWRSRRFVFPDGPGLRPTPDRVRETLFNWLAPYVEGARVLDPFAGSGALFLEALSRGAREGLALDTNG 91
Cdd:TIGR00095 4 HSGSGKIRIIGGQYRGRKLKVPPGPSTRPTTDRVRESLFNILRPDIVGAHFLDLFAGSGALGLEALSRGAASAVFVEQDR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 92 EAVAALRNHLDALKC-GTAQLVLGDAVRYLGNQAP--SAFDLVFLDPPFHQNLLQDACRLLETRGWLNPDAWIYTESESV 168
Cdd:TIGR00095 84 KVAQTLKENLSTLKKsGEQATVLNDAVRALLFLAKkqTPFDIIYLDPPFNRGLLEALLELLGENKWLNPKGLIVVEYDRE 163
|
170 180
....*....|....*....|....*..
gi 489193531 169 PSSLGLPGNWRLHREKKAGNVHYALWQ 195
Cdd:TIGR00095 164 NELPTVPETWSLLRQKVYGQSALRLYQ 190
|
|
| Trm11 |
COG1041 |
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ... |
49-137 |
1.34e-13 |
|
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440663 [Multi-domain] Cd Length: 172 Bit Score: 65.74 E-value: 1.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 49 LFNwLAPYVEGARVLDPFAGSGALFLEALSRGAReGLALDTNGEAVAALRNHLDALKCGTAQLVLGDAvRYLgNQAPSAF 128
Cdd:COG1041 18 LVN-LAGAKEGDTVLDPFCGTGTILIEAGLLGRR-VIGSDIDPKMVEGARENLEHYGYEDADVIRGDA-RDL-PLADESV 93
|
....*....
gi 489193531 129 DLVFLDPPF 137
Cdd:COG1041 94 DAIVTDPPY 102
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
61-155 |
8.48e-11 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 56.67 E-value: 8.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 61 RVLDPFAGSGALFLEALSRGAREGLALDTNGEAVAALRNHLDALKCGTAQLVLGDAvRYLGNQAPSAFDLVFLDPPFH-- 138
Cdd:cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDA-EELPPEADESFDVIISDPPLHhl 79
|
90 100
....*....|....*....|.
gi 489193531 139 ----QNLLQDACRLLETRGWL 155
Cdd:cd02440 80 vedlARFLEEARRLLKPGGVL 100
|
|
| RlmK |
COG1092 |
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure ... |
52-155 |
1.02e-09 |
|
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure and biogenesis]; 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI is part of the Pathway/BioSystem: 23S rRNA modification
Pssm-ID: 440709 [Multi-domain] Cd Length: 392 Bit Score: 56.73 E-value: 1.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 52 WLAPYVEGARVLDPFAGSGALFLEALSRGAREGLALDTNGEAVAALR-----NHLDAlkcgTAQLVLGDAVRYLGNQAPS 126
Cdd:COG1092 210 RVAELAKGKRVLNLFSYTGGFSVHAAAGGAKSVTSVDLSATALEWAKenaalNGLDD----RHEFVQADAFDWLRELARE 285
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 489193531 127 A--FDLVFLDPP-F-------------HQNLLQDACRLLETRGWL 155
Cdd:COG1092 286 GerFDLIILDPPaFakskkdlfdaqrdYKDLNRLALKLLAPGGIL 330
|
|
| TrmA |
COG2265 |
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ... |
43-136 |
3.30e-08 |
|
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 441866 [Multi-domain] Cd Length: 377 Bit Score: 52.49 E-value: 3.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 43 DRVREtlfnWLAPYvEGARVLDPFAGSGaLFLEALSRGAREGLALDTNGEAVAALRNHLDALKCGTAQLVLGDAVRYLGN 122
Cdd:COG2265 223 AAALE----WLDLT-GGERVLDLYCGVG-TFALPLARRAKKVIGVEIVPEAVEDARENARLNGLKNVEFVAGDLEEVLPE 296
|
90
....*....|....*
gi 489193531 123 QAPSA-FDLVFLDPP 136
Cdd:COG2265 297 LLWGGrPDVVVLDPP 311
|
|
| COG2263 |
COG2263 |
Predicted RNA methylase [General function prediction only]; |
40-137 |
5.93e-07 |
|
Predicted RNA methylase [General function prediction only];
Pssm-ID: 441864 [Multi-domain] Cd Length: 199 Bit Score: 47.98 E-value: 5.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 40 PTPDRVRETLFnWLA---PYVEGARVLDPFAGSGALFLEALSRGAREGLALDTNGEAVAALRNHLDALKCgTAQLVLGDA 116
Cdd:COG2263 25 PTPAELAAELL-HLAylrGDIEGKTVLDLGCGTGMLAIGAALLGAKKVVGVDIDPEALEIARENAERLGV-RVDFIRADV 102
|
90 100
....*....|....*....|.
gi 489193531 117 VRylgNQAPSAFDLVFLDPPF 137
Cdd:COG2263 103 TR---IPLGGSVDTVVMNPPF 120
|
|
| UbiG |
COG2227 |
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ... |
39-155 |
2.98e-06 |
|
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 441829 [Multi-domain] Cd Length: 126 Bit Score: 44.62 E-value: 2.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 39 RPTPDRVRETLFNWLAPYV-EGARVLDPFAGSGALFLEALSRGAReGLALDTNGEAVAALRNHLDALKcgtAQLVLGDAV 117
Cdd:COG2227 4 PDARDFWDRRLAALLARLLpAGGRVLDVGCGTGRLALALARRGAD-VTGVDISPEALEIARERAAELN---VDFVQGDLE 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 489193531 118 RYlgNQAPSAFDLVFL--------DPpfhQNLLQDACRLLETRGWL 155
Cdd:COG2227 80 DL--PLEDGSFDLVICsevlehlpDP---AALLRELARLLKPGGLL 120
|
|
| PRK15128 |
PRK15128 |
23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI; |
56-147 |
3.06e-06 |
|
23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI;
Pssm-ID: 185082 [Multi-domain] Cd Length: 396 Bit Score: 46.75 E-value: 3.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 56 YVEGARVLDPFAGSGALFLEALSRGAREGLALDTNGEAVAALRNH--LDALKCGTAQLVLGDAVRYLGNQAPSA--FDLV 131
Cdd:PRK15128 218 YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNveLNKLDLSKAEFVRDDVFKLLRTYRDRGekFDVI 297
|
90
....*....|....*....
gi 489193531 132 FLDPPF---HQNLLQDACR 147
Cdd:PRK15128 298 VMDPPKfveNKSQLMGACR 316
|
|
| SmtA |
COG0500 |
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ... |
58-155 |
7.96e-06 |
|
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];
Pssm-ID: 440266 [Multi-domain] Cd Length: 199 Bit Score: 44.52 E-value: 7.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 58 EGARVLDPFAGSGALFLEALSRGAREGLALDTNGEAVAALRNHLDALKCGTAQLVLGDAVRYLGNQAPSaFDLVF----- 132
Cdd:COG0500 26 KGGRVLDLGCGTGRNLLALAARFGGRVIGIDLSPEAIALARARAAKAGLGNVEFLVADLAELDPLPAES-FDLVVafgvl 104
|
90 100
....*....|....*....|....*
gi 489193531 133 --LDPPFHQNLLQDACRLLETRGWL 155
Cdd:COG0500 105 hhLPPEEREALLRELARALKPGGVL 129
|
|
| PRK14967 |
PRK14967 |
putative methyltransferase; Provisional |
54-137 |
3.49e-05 |
|
putative methyltransferase; Provisional
Pssm-ID: 184931 [Multi-domain] Cd Length: 223 Bit Score: 43.12 E-value: 3.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 54 APYVEGARVLDPFAGSGALFLEALSRGAREGLALDTNGEAVAALRnhLDALKCG-TAQLVLGDAVRYLGNQapsAFDLVF 132
Cdd:PRK14967 32 EGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSAR--LNALLAGvDVDVRRGDWARAVEFR---PFDVVV 106
|
....*
gi 489193531 133 LDPPF 137
Cdd:PRK14967 107 SNPPY 111
|
|
| RsmC |
COG2813 |
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
55-155 |
3.58e-05 |
|
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA G1207 methylase RsmC is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 442062 [Multi-domain] Cd Length: 191 Bit Score: 42.48 E-value: 3.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 55 PYVEGARVLDPFAGSGALFLEALSRGAREGL-ALDTNGEAVAALRNHLDALKCGTAQLVLGDAvryLGNQAPSAFDLVFL 133
Cdd:COG2813 46 PEPLGGRVLDLGCGYGVIGLALAKRNPEARVtLVDVNARAVELARANAAANGLENVEVLWSDG---LSGVPDGSFDLILS 122
|
90 100 110
....*....|....*....|....*....|..
gi 489193531 134 DPPFHQ----------NLLQDACRLLETRGWL 155
Cdd:COG2813 123 NPPFHAgravdkevahALIADAARHLRPGGEL 154
|
|
| TRM1 |
COG1867 |
tRNA G26 N,N-dimethylase Trm1 [Translation, ribosomal structure and biogenesis]; tRNA G26 N, ... |
61-155 |
6.78e-05 |
|
tRNA G26 N,N-dimethylase Trm1 [Translation, ribosomal structure and biogenesis]; tRNA G26 N,N-dimethylase Trm1 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 441472 Cd Length: 383 Bit Score: 42.55 E-value: 6.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 61 RVLDPFAGSGAlflealsRGAR-------EGLALDTNGEAVAALRNHLDALKCGTAQLVLGDAVRYLgNQAPSAFDLVFL 133
Cdd:COG1867 60 SYLDALAASGI-------RGLRyalevgiKVTLNDIDPEAVELIRENLELNGLEDVEVYNRDANALL-HELGRRFDVVDL 131
|
90 100
....*....|....*....|....*..
gi 489193531 134 DP-----PFhqnlLQDACRLLETRGWL 155
Cdd:COG1867 132 DPfgspaPF----IDSALRAARKGGLL 154
|
|
| HsdM |
COG0286 |
Type I restriction-modification system, DNA methylase subunit [Defense mechanisms]; |
41-137 |
8.02e-05 |
|
Type I restriction-modification system, DNA methylase subunit [Defense mechanisms];
Pssm-ID: 440055 [Multi-domain] Cd Length: 243 Bit Score: 42.10 E-value: 8.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 41 TPDRVRETLFNWLAPYvEGARVLDPFAGSGALFLEA------LSRGAREGLAL---DTNGEAVA------ALRNhldalk 105
Cdd:COG0286 27 TPREVVRLMVELLDPK-PGETVYDPACGSGGFLVEAaeylkeHGGDERKKLSLygqEINPTTYRlakmnlLLHG------ 99
|
90 100 110
....*....|....*....|....*....|..
gi 489193531 106 CGTAQLVLGDAVRYLGNQAPSaFDLVFLDPPF 137
Cdd:COG0286 100 IGDPNIELGDTLSNDGDELEK-FDVVLANPPF 130
|
|
| Trm5 |
COG2520 |
tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]; tRNA G37 ... |
58-156 |
8.99e-05 |
|
tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]; tRNA G37 N-methylase Trm5 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 442010 [Multi-domain] Cd Length: 333 Bit Score: 42.16 E-value: 8.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 58 EGARVLDPFAGSGALFLEALSRGAREGLALDTNGEAVA-----ALRNHLDalkcGTAQLVLGDAvRYLGNQAPSAFDLVF 132
Cdd:COG2520 180 PGERVLDMFAGVGPFSIPIAKRSGAKVVAIDINPDAVEylkenIRLNKVE----DRVTPILGDA-REVAPELEGKADRII 254
|
90 100
....*....|....*....|....*
gi 489193531 133 LDPPFH-QNLLQDACRLLETRGWLN 156
Cdd:COG2520 255 MNLPHSaDEFLDAALRALKPGGVIH 279
|
|
| Methyltransf_25 |
pfam13649 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
62-149 |
1.73e-04 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 463945 [Multi-domain] Cd Length: 96 Bit Score: 39.08 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 62 VLDPFAGSGALFLEALSRGAREGLALDTNGEAVAALRNHLDALKCgTAQLVLGDAVRYlgNQAPSAFDLVF-------LD 134
Cdd:pfam13649 1 VLDLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAEAGL-NVEFVQGDAEDL--PFPDGSFDLVVssgvlhhLP 77
|
90
....*....|....*
gi 489193531 135 PPFHQNLLQDACRLL 149
Cdd:pfam13649 78 DPDLEAALREIARVL 92
|
|
| TrmR |
COG4122 |
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; ... |
66-153 |
1.99e-04 |
|
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; tRNA 5-hydroxyU34 O-methylase TrmR/YrrM is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 443298 Cd Length: 173 Bit Score: 40.17 E-value: 1.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 66 FAG-SGALFLEALSRGARegL-ALDTNGEAVAALRNHLDALKCGT-AQLVLGDAVRYLGNQAPSAFDLVFLD--PPFHQN 140
Cdd:COG4122 26 GTGySTLWLARALPDDGR--LtTIEIDPERAAIARENFARAGLADrIRLILGDALEVLPRLADGPFDLVFIDadKSNYPD 103
|
90
....*....|...
gi 489193531 141 LLQDACRLLETRG 153
Cdd:COG4122 104 YLELALPLLRPGG 116
|
|
| UbiE |
COG2226 |
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ... |
45-133 |
3.45e-04 |
|
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis
Pssm-ID: 441828 [Multi-domain] Cd Length: 143 Bit Score: 39.21 E-value: 3.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 45 VRETLFNWLAPyVEGARVLDPFAGSGALFLEALSRGAReGLALDTNGEAVAALRNHLDALKCGtAQLVLGDAVRYlgNQA 124
Cdd:COG2226 10 GREALLAALGL-RPGARVLDLGCGTGRLALALAERGAR-VTGVDISPEMLELARERAAEAGLN-VEFVVGDAEDL--PFP 84
|
....*....
gi 489193531 125 PSAFDLVFL 133
Cdd:COG2226 85 DGSFDLVIS 93
|
|
| PrmA |
COG2264 |
Ribosomal protein L11 methylase PrmA [Translation, ribosomal structure and biogenesis]; |
52-155 |
3.70e-03 |
|
Ribosomal protein L11 methylase PrmA [Translation, ribosomal structure and biogenesis];
Pssm-ID: 441865 [Multi-domain] Cd Length: 284 Bit Score: 37.07 E-value: 3.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 52 WLAPYV-EGARVLDPFAGSGALFLEALSRGAREGLALDTNGEAVA-----ALRNHLDALkcgtAQLVLGDAVrylgnqAP 125
Cdd:COG2264 141 ALEKLLkPGKTVLDVGCGSGILAIAAAKLGAKRVLAVDIDPVAVEaarenAELNGVEDR----IEVVLGDLL------ED 210
|
90 100 110
....*....|....*....|....*....|...
gi 489193531 126 SAFDLVF---LDPPfHQNLLQDACRLLETRGWL 155
Cdd:COG2264 211 GPYDLVVaniLANP-LIELAPDLAALLKPGGYL 242
|
|
| RsmB |
COG0144 |
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and ... |
53-136 |
4.94e-03 |
|
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 439914 [Multi-domain] Cd Length: 441 Bit Score: 36.91 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 53 LAPyVEGARVLDPFAGSG--ALFLEALSRGAREGLALDTNGEAVAALRNHLDALKCGTAQLVLGDAvRYLGNQAPSAFDL 130
Cdd:COG0144 245 LDP-KPGERVLDLCAAPGgkTLHLAELMGNKGRVVAVDISEHRLKRLRENLARLGLSNVEVVVADA-RELLEWLPGKFDR 322
|
....*.
gi 489193531 131 VFLDPP 136
Cdd:COG0144 323 VLLDAP 328
|
|
| MTS |
pfam05175 |
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ... |
61-155 |
9.24e-03 |
|
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.
Pssm-ID: 428349 [Multi-domain] Cd Length: 170 Bit Score: 35.26 E-value: 9.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489193531 61 RVLDPFAGSGALFLEALSRGAREGL-ALDTNGEAVAALRNHLDALKCGTAQLVLGDAvryLGNQAPSAFDLVFLDPPFH- 138
Cdd:pfam05175 34 KVLDLGCGAGVLGAALAKESPDAELtMVDINARALESARENLAANGLENGEVVASDV---YSGVEDGKFDLIISNPPFHa 110
|
90 100
....*....|....*....|....*.
gi 489193531 139 ---------QNLLQDACRLLETRGWL 155
Cdd:pfam05175 111 glattynvaQRFIADAKRHLRPGGEL 136
|
|
| |
