|
Name |
Accession |
Description |
Interval |
E-value |
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
1-508 |
0e+00 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 768.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 1 MRIHVSFIDRVGITQEVLALLGGRNLNLDAVEMVP-PNVYIDAPTLSPEVLEELRAALLGIRGVQAMTVVDILPGQRRRL 79
Cdd:COG3283 1 MRLEVTCEDRLGITRELLDLLVERNIDLRGIEIDPsGRIYLNFPELDFEQFQHLMPEIRRIPGVTDVRTVPFMPSEREHL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 80 QLDALLAAMADPVLAVDGKGLVLLANPAFSERCGRDPA---GERLASLFDDETLEDALVEQGFRLPLREVTFMGQALLLD 156
Cdd:COG3283 81 ELDALLEALPDPVFSIDLKGKIELANPAALSLLGLSEEeliGQPLSELLKGFNFSRWLESNEPRPQSERVVINGQDYLAD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 157 ATPITEGPGEGERHLAGGLLTLYEPNRIGERLAALHHDHAEGFEMLLGDSQPIRTLKTRAQRVAALDAPLLIHGETGTGK 236
Cdd:COG3283 161 ILPIYLPDEEGKSILAGAVVTLKSAARLGEQLQALQVNDDSGFDHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 237 ELVARGCHALSARHNSPFLALNCAALPENLAESELFGYAPGAFtGAQRGGKPGLLELAHQGTVFLDEIGEMSPYLQAKLL 316
Cdd:COG3283 241 ELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAF-GNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLL 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 317 RFLSDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSFREDLFYRLNVLSLEVPPLRERGHDILLLARHFMQQACAQI 396
Cdd:COG3283 320 RFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQL 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 397 QRPVCRLAPGTYPALLSNRWPGNVRQLQNVIFRAAAICESSLVDIGDLEIAGTAVA--RQNDGEVGSLEEAVEGFEKALL 474
Cdd:COG3283 400 GRPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLEGDELTPEDLQLPEYAASagLLDDLLEGSLDEIVKRFERSLL 479
|
490 500 510
....*....|....*....|....*....|....
gi 489196486 475 EKLYVSYPSTRQLAARLQTSHTAIAHRLRKYGIG 508
Cdd:COG3283 480 RRLYPSYPSTRKLAKRLGVSHTAIANKLREYGIG 513
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
75-507 |
1.27e-166 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 478.50 E-value: 1.27e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 75 QRRRLQLDALLAAMADPVLAVDGKGLVLLANPAFSERCGRDPA---GERLASLFDDETLEDALvEQGFRLPLREVTFMGQ 151
Cdd:COG3829 7 KELEEELEAILDSLDDGIIVVDADGRITYVNRAAERILGLPREeviGKNVTELIPNSPLLEVL-KTGKPVTGVIQKTGGK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 152 A--LLLDATPITEgpgEGErhLAGGLLTLYEP-------NRIGERLAALHHDHAEGFEMLLGDSQPIRTLKTRAQRVAAL 222
Cdd:COG3829 86 GktVIVTAIPIFE---DGE--VIGAVETFRDItelkrleRKLREEELERGLSAKYTFDDIIGKSPAMKELLELAKRVAKS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 223 DAPLLIHGETGTGKELVARGCHALSARHNSPFLALNCAALPENLAESELFGYAPGAFTGAQRGGKPGLLELAHQGTVFLD 302
Cdd:COG3829 161 DSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFELADGGTLFLD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 303 EIGEMSPYLQAKLLRFLSDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSFREDLFYRLNVLSLEVPPLRERGHDIL 382
Cdd:COG3829 241 EIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 383 LLARHFMQQACAQIQRPVCRLAPGTYPALLSNRWPGNVRQLQNVIFRAAAICESSLVDIGDLEIAGTAVARQ-NDGEVGS 461
Cdd:COG3829 321 LLAEHFLEKFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVITPEHLPEYLLEEAEAaSAAEEGS 400
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 489196486 462 LEEAVEGFEKALLEKLYVSYPSTRQLAAR-LQTSHTAIAHRLRKYGI 507
Cdd:COG3829 401 LKEALEEVEKELIEEALEKTGGNKSKAAKaLGISRSTLYRKLKKYGI 447
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
1-510 |
2.27e-151 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 442.59 E-value: 2.27e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 1 MRIHVSFIDRVGITQEVLALLGGRNLNLDAVEMVPPN-VYIDAPTLSPEVLEELRAALLGIRGVQAMTVVDILPGQRRRL 79
Cdd:PRK10820 1 MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIGrIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPFMPSEREHR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 80 QLDALLAAMADPVLAVDGKGLVLLANPA----FS---ERCGRDPAGERLASLFDDETLEDALVEqgfrlPLRE-VTFMGQ 151
Cdd:PRK10820 81 ALSALLEALPEPVLSIDMKGKVELANPAscqlFGqseEKLRNHTAAQLINGFNFLRWLESEPQD-----SHNEhVVINGQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 152 ALLLDATPITEGPGEGERHLAGGLLTLYEPNRIGERLAALHHDHAEGFEMLLGDSQPIRTLKTRAQRVAALDAPLLIHGE 231
Cdd:PRK10820 156 DFLMEITPVYLQDENDQHVLVGAVVMLRSTARMGRQLQNLAVNDDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGD 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 232 TGTGKELVARGCHALSARHNSPFLALNCAALPENLAESELFGYAPGAFTGAQRGgKPGLLELAHQGTVFLDEIGEMSPYL 311
Cdd:PRK10820 236 TGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEG-KKGFFEQANGGSVLLDEIGEMSPRM 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 312 QAKLLRFLSDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSFREDLFYRLNVLSLEVPPLRERGHDILLLARHFMQQ 391
Cdd:PRK10820 315 QAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVAR 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 392 ACAQ--IQRPvcRLAPGTYPALLSNRWPGNVRQLQNVIFRAAAICES---SLVDIgDLEIAGTAVARQNDGEVGSLEEAV 466
Cdd:PRK10820 395 FADEqgVPRP--KLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLEGyelRPQDI-LLPDYDAAVAVGEDAMEGSLDEIT 471
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 489196486 467 EGFEKALLEKLYVSYPSTRQLAARLQTSHTAIAHRLRKYGIGPR 510
Cdd:PRK10820 472 SRFERSVLTRLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQK 515
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
187-506 |
2.52e-115 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 346.57 E-value: 2.52e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 187 RLAALHHDHAEGFEMLlGDSQPIRTLKTRAQRVAALDAPLLIHGETGTGKELVARGCHALSARHNSPFLALNCAALPENL 266
Cdd:COG2204 119 ERRRLRRENAEDSGLI-GRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEEL 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 267 AESELFGYAPGAFTGAQRGgKPGLLELAHQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVRVDVRILSATHRN 346
Cdd:COG2204 198 LESELFGHEKGAFTGAVAR-RIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRD 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 347 LEKMVAEGSFREDLFYRLNVLSLEVPPLRERGHDILLLARHFMQQACAQIQRPVcRLAPGTYPALLSNRWPGNVRQLQNV 426
Cdd:COG2204 277 LEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPV-KLSPEALEALLAYDWPGNVRELENV 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 427 IFRAAAICESSLVDIGDleiagtavarqndgevgsLEEAVEGFEKALLEKLYVSYPSTRQLAAR-LQTSHTAIAHRLRKY 505
Cdd:COG2204 356 IERAVILADGEVITAED------------------LPEALEEVERELIERALEETGGNVSRAAElLGISRRTLYRKLKKY 417
|
.
gi 489196486 506 G 506
Cdd:COG2204 418 G 418
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
80-506 |
8.29e-115 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 352.28 E-value: 8.29e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 80 QLDALLAAMADPVLAVDGKGLVLLANPAfsercgrdpaGERLASLfDDETLEDALVEQGFRLPLREVTFMGQALLLDATP 159
Cdd:COG3284 217 FLPEFLGSLSEGLLAFDEDGRIVAANRA----------ARRLLGL-ADAALLGRPLEELFGLDLEALPDGARRAPASPRP 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 160 ITEGPGEGerhlAGGLLTLYEPNRIGERLAALHHdHAEGFEMLLGDSQPIRTLKTRAQRVAALDAPLLIHGETGTGKELV 239
Cdd:COG3284 286 LRLRDGRR----LGALLRLRPARRAARAAPAGAP-APAALAALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELF 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 240 ARGCHALSARHNSPFLALNCAALPENLAESELFGYAPGAFTGAQRGGKPGLLELAHQGTVFLDEIGEMSPYLQAKLLRFL 319
Cdd:COG3284 361 ARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAFTGARRKGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVL 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 320 SDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSFREDLFYRLNVLSLEVPPLRERGhDILLLARHFMQQACAQIQRP 399
Cdd:COG3284 441 QEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFREDLYYRLNGLTLTLPPLRERE-DLPALIEHLLRELAAGRGPL 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 400 vcRLAPGTYPALLSNRWPGNVRQLQNVIFRAAAICESSLVDIGDL--EIAGTAVARQ--NDGEVGSLEEAvegfEKALLE 475
Cdd:COG3284 520 --RLSPEALALLAAYPWPGNVRELRNVLRTALALADGGVITVEDLpdELRAELAAAApaAAAPLTSLEEA----ERDAIL 593
|
410 420 430
....*....|....*....|....*....|....*..
gi 489196486 476 KLY------VSypstrQLAARLQTSHTAIAHRLRKYG 506
Cdd:COG3284 594 RALracggnVS-----AAARALGISRSTLYRKLKRYG 625
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
202-370 |
1.03e-96 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 289.69 E-value: 1.03e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 202 LLGDSQPIRTLKTRAQRVAALDAPLLIHGETGTGKELVARGCHALSARHNSPFLALNCAALPENLAESELFGYAPGAFTG 281
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 282 AQRGGKpGLLELAHQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSFREDLF 361
Cdd:pfam00158 81 ADSDRK-GLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLY 159
|
....*....
gi 489196486 362 YRLNVLSLE 370
Cdd:pfam00158 160 YRLNVIPIE 168
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
185-476 |
4.68e-96 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 300.17 E-value: 4.68e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 185 GERLAALHHDHAEGFEMLlGDSQPIRTLKTRAQRVAALDAPLLIHGETGTGKELVARGCHALSARHNSPFLALNCAALPE 264
Cdd:PRK05022 173 QDVAEFLRQEALKEGEMI-GQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 265 NLAESELFGYAPGAFTGA--QRGGKpglLELAHQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVRVDVRILSA 342
Cdd:PRK05022 252 SLAESELFGHVKGAFTGAisNRSGK---FELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAA 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 343 THRNLEKMVAEGSFREDLFYRLNVLSLEVPPLRERGHDILLLARHFMQQACAQIQRPVCRLAPGTYPALLSNRWPGNVRQ 422
Cdd:PRK05022 329 TNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRE 408
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489196486 423 LQNVIFRAA--AICESS----LVDIGDLEIAGTAVARQND-------GEVGSLEEAVEGFEKALLEK 476
Cdd:PRK05022 409 LEHVISRAAllARARGAgrivTLEAQHLDLPAEVALPPPEaaaapaaVVSQNLREATEAFQRQLIRQ 475
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
201-440 |
1.65e-90 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 286.61 E-value: 1.65e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 201 MLLGDSQPIRTLKTRAQRVAALDAPLLIHGETGTGKELVARGCHALSARHNSPFLALNCAALPENLAESELFGYAPGAFT 280
Cdd:TIGR01817 197 GIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFT 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 281 GAQRGGKpGLLELAHQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSFREDL 360
Cdd:TIGR01817 277 GAIAQRK-GRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADL 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 361 FYRLNVLSLEVPPLRERGHDILLLARHFMQQACAQIQRPVcRLAPGTYPALLSNRWPGNVRQLQNVIFRAAAICESSLVD 440
Cdd:TIGR01817 356 YYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPL-TITPSAIRVLMSCKWPGNVRELENCLERTATLSRSGTIT 434
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
188-507 |
3.20e-87 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 275.57 E-value: 3.20e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 188 LAALHHDHAE--GFEMLLGDSQPIRTLKTRAQRVAALDAPLLIHGETGTGKELVARGCHALSARHNSPFLALNCAALPEN 265
Cdd:PRK11361 129 IRHLHQALSTswQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 266 LAESELFGYAPGAFTGAQrGGKPGLLELAHQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVRVDVRILSATHR 345
Cdd:PRK11361 209 LLESELFGHEKGAFTGAQ-TLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNR 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 346 NLEKMVAEGSFREDLFYRLNVLSLEVPPLRERGHDILLLARHFMQQACAQIQRPVCRLAPGTYPALLSNRWPGNVRQLQN 425
Cdd:PRK11361 288 DLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSN 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 426 VIFRAAAICESSLVDIGDL-------EIAGTAVARQNDGEVGSLEEAVEGFEKALLEKLYVSYPSTRQLAARLQTSHTAI 498
Cdd:PRK11361 368 VIERAVVMNSGPIIFSEDLppqirqpVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRAL 447
|
....*....
gi 489196486 499 AHRLRKYGI 507
Cdd:PRK11361 448 MYKLQEYGI 456
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
175-478 |
4.92e-86 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 272.39 E-value: 4.92e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 175 LLTLYEPNRigeRLAALHHDHAegFEMLLGDSQPIRTLKTRAQRVAALDAPLLIHGETGTGKELVARGCHALSARHNSPF 254
Cdd:TIGR02915 119 LYTLETENR---RLQSALGGTA--LRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRF 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 255 LALNCAALPENLAESELFGYAPGAFTGAQRGgKPGLLELAHQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVR 334
Cdd:TIGR02915 194 VAINCAAIPENLLESELFGYEKGAFTGAVKQ-TLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIP 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 335 VDVRILSATHRNLEKMVAEGSFREDLFYRLNVLSLEVPPLRERGHDILLLARHFMQQACAQIQRPVCRLAPGTYPALLSN 414
Cdd:TIGR02915 273 VDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAH 352
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489196486 415 RWPGNVRQLQNVIFRAAAICESSLVDIGDLEIAGTAVArQNDGEVgSLEEAVEGFEKALLEKLY 478
Cdd:TIGR02915 353 AWPGNVRELENKVKRAVIMAEGNQITAEDLGLDARERA-ETPLEV-NLREVRERAEREAVRKAI 414
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
202-431 |
4.52e-83 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 267.11 E-value: 4.52e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 202 LLGDSQPIRTLKTRAQRVAALDAPLLIHGETGTGKELVARGCHALSARHNSPFLALNCAALPENLAESELFGYAPGAFTG 281
Cdd:TIGR02329 214 LLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTG 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 282 AQRGGKPGLLELAHQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSFREDLF 361
Cdd:TIGR02329 294 ARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLF 373
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489196486 362 YRLNVLSLEVPPLRERGHDILLLARHFMQQACAQIQRPVCRLA----PGTYPALLSNRWPGNVRQLQNVIFRAA 431
Cdd:TIGR02329 374 YRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAaqvlAGVADPLQRYPWPGNVRELRNLVERLA 447
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
185-431 |
1.13e-82 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 266.20 E-value: 1.13e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 185 GERLAALHHDHAegfemLLGDSQPIRTLKTRAQRVAALDAPLLIHGETGTGKELVARGCHA--------LSARHNSPFLA 256
Cdd:PRK15424 209 RNALRTRYVLGD-----LLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHReyfarhdaRQGKKSHPFVA 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 257 LNCAALPENLAESELFGYAPGAFTGAQRGGKPGLLELAHQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVRVD 336
Cdd:PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVD 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 337 VRILSATHRNLEKMVAEGSFREDLFYRLNVLSLEVPPLRERGHDILLLARHFMQQACAQIQRPVC-----RLAPGTyPAL 411
Cdd:PRK15424 364 VRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSaalrqGLQQCE-TLL 442
|
250 260
....*....|....*....|
gi 489196486 412 LSNRWPGNVRQLQNVIFRAA 431
Cdd:PRK15424 443 LHYDWPGNVRELRNLMERLA 462
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
218-491 |
7.38e-82 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 261.98 E-value: 7.38e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 218 RVAALDAPLLIHGETGTGKELVARGCHALSARHNSPFLALNCAALPENLAESELFGYAPGAFTGA--QRGGKpglLELAH 295
Cdd:TIGR01818 152 RLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGAntRRQGR---FEQAD 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 296 QGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSFREDLFYRLNVLSLEVPPLR 375
Cdd:TIGR01818 229 GGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLR 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 376 ERGHDILLLARHFMQQACAQIQRPVCRLAPGTYPALLSNRWPGNVRQLQNVIFRAAAICESSLVDIGDLE---IAGTAVA 452
Cdd:TIGR01818 309 ERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGDEVLVSDLPaelALTGRPA 388
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 453 RQND---------------------GEVGSLEEAVEGFEKALLEKLYVSYPSTRQLAARL 491
Cdd:TIGR01818 389 SAPDsdgqdswdealeawakqalsrGEQGLLDRALPEFERPLLEAALQHTRGHKQEAAAL 448
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
172-476 |
1.90e-75 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 244.55 E-value: 1.90e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 172 AGGLLTLYEP---NRIGERLA-ALHHDHAEGFEM---------LLGDSQPIRTLKTRAQRVAALDAPLLIHGETGTGKEL 238
Cdd:PRK10365 98 TGALDYLIKPldfDNLQATLEkALAHTHSIDAETpavtasqfgMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 239 VARGCHALSARHNSPFLALNCAALPENLAESELFGYAPGAFTGAQRGGKPGLLElAHQGTVFLDEIGEMSPYLQAKLLRF 318
Cdd:PRK10365 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE-ADGGTLFLDEIGDISPMMQVRLLRA 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 319 LSDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSFREDLFYRLNVLSLEVPPLRERGHDILLLARHFMQQACAQIQR 398
Cdd:PRK10365 257 IQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRK 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 399 PVCRLAPGTYPALLSNRWPGNVRQLQNVIFRAAAICESSLVDIGD--LEIAGTAVARQNDGEVGSLEEAVEGFEKALLEK 476
Cdd:PRK10365 337 AVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERElpLAIASTPIPLGQSQDIQPLVEVEKEVILAALEK 416
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
212-477 |
4.71e-74 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 240.89 E-value: 4.71e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 212 LKTRAQRVAALDAPLLIHGETGTGKELVARGCHALSARHNSPFLALNCAALPENLAESELFGYAPGAFTGAQrGGKPGLL 291
Cdd:PRK15115 146 LLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAV-SNREGLF 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 292 ELAHQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSFREDLFYRLNVLSLEV 371
Cdd:PRK15115 225 QAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 372 PPLRERGHDILLLARHFMQQAcAQIQRPVCR-LAPGTYPALLSNRWPGNVRQLQNVIFRAAAICESSLvdigdleIAGTA 450
Cdd:PRK15115 305 PALAERTEDIPLLANHLLRQA-AERHKPFVRaFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPV-------ISDAL 376
|
250 260 270
....*....|....*....|....*....|
gi 489196486 451 VARQNDGEVGSLE---EAVEGFEKALLEKL 477
Cdd:PRK15115 377 VEQALEGENTALPtfvEARNQFELNYLRKL 406
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
226-426 |
4.51e-71 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 233.99 E-value: 4.51e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 226 LLIHGETGTGKELVARGCHALSARHNSPFLALNCAALPENLAESELFGYAPGAFTGAQRGgKPGLLELAHQGTVFLDEIG 305
Cdd:PRK10923 164 VLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTI-RQGRFEQADGGTLFLDEIG 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 306 EMSPYLQAKLLRFLSDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSFREDLFYRLNVLSLEVPPLRERGHDILLLA 385
Cdd:PRK10923 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLA 322
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 489196486 386 RHFMQQACAQIQRPVCRLAPGTYPALLSNRWPGNVRQLQNV 426
Cdd:PRK10923 323 RHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
196-430 |
9.99e-70 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 226.09 E-value: 9.99e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 196 AEGFEMLLGDSQPIRTLKTRAQRVAALDAPLLIHGETGTGKELVARGCHALSARHNSPFLALNCAALPENLAESELFGYA 275
Cdd:PRK11608 2 AEYKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 276 PGAFTGAQRGgKPGLLELAHQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGS 355
Cdd:PRK11608 82 AGAFTGAQKR-HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGK 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489196486 356 FREDLFYRLNVLSLEVPPLRERGHDILLLARHFMQQACAQIQRPvcrLAPGTYPA----LLSNRWPGNVRQLQNVIFRA 430
Cdd:PRK11608 161 FRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLP---LFPGFTERaretLLNYRWPGNIRELKNVVERS 236
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
76-507 |
1.32e-67 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 220.87 E-value: 1.32e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 76 RRRLQLDALLAAMADPVLAVDGKGLVLLANPAFSERCGRDPAGERLASLFDDETLEDALVEQGFRLPLREVTFMGQALLL 155
Cdd:COG3604 4 ALRLLGLPLLLLLALALLLLVLLLLALLLRGDLLASALVLEESLELLALALSEALLAAQARQAALAARERQLFLGVPLRV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 156 DATPItegpgegerhlagGLLTLyepnrigerlaalHHDHAEGFemllgDSQPIRTLKTRAQRVAALdapllIHGETGTG 235
Cdd:COG3604 84 GGEVL-------------GVLTL-------------DSRRPGAF-----SEEDLRLLETLASLAAVA-----ILGETGTG 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 236 KELVARGCHALSARHNSPFLALNCAALPENLAESelfgyapgaftgaqrggkpgllelahqgtvfldeigemspyLQakl 315
Cdd:COG3604 128 KELVANAIHELSPRADKPFVKVNCAALPESLLES-----------------------------------------LQ--- 163
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 316 lrflsDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSFREDLFYRLNVLSLEVPPLRERGHDILLLARHFMQQACAQ 395
Cdd:COG3604 164 -----EGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLRERREDIPLLAEHFLEKFSRR 238
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 396 IQRPVCRLAPGTYPALLSNRWPGNVRQLQNVIFRAAAICESSLVDIGDLEIAGtavarqndgevgslEEAVEGFEKALLE 475
Cdd:COG3604 239 LGKPILRLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDLAPGS--------------REALEEVEREHIL 304
|
410 420 430
....*....|....*....|....*....|...
gi 489196486 476 KLYVSYPSTRQLAAR-LQTSHTAIAHRLRKYGI 507
Cdd:COG3604 305 EALERTGGNIAGAARlLGLTPSTLRSRMKKLGI 337
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
199-507 |
1.53e-65 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 224.71 E-value: 1.53e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 199 FEMLLGDSQPIRTLKTRAQRVAALDAPLLIHGETGTGKELVARGCHALSARHNSPFLALNCAALPENLAESELFGYAPGA 278
Cdd:PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 279 FTGA--QRGGKpglLELAHQGTVFLDEIGEMSPYLQAKLLRFLSDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSF 356
Cdd:PRK15429 455 FTGAsaQRIGR---FELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREF 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 357 REDLFYRLNVLSLEVPPLRERGHDILLLARHFMQQACAQIQRPVCRLAPGTYPALLSNRWPGNVRQLQNVIFRA-----A 431
Cdd:PRK15429 532 RSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAvlltrG 611
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 432 AICESSLVDIGDLEIAGTAVARqndgevgslEEAVEGF-EKALLEKLY------VSYPstRQLAARLQTSHTAIAHRLRK 504
Cdd:PRK15429 612 NVLQLSLPDITLPEPETPPAAT---------VVAQEGEdEYQLIVRVLketngvVAGP--KGAAQRLGLKRTTLLSRMKR 680
|
...
gi 489196486 505 YGI 507
Cdd:PRK15429 681 LGI 683
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
80-510 |
2.60e-56 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 198.75 E-value: 2.60e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 80 QLDALLAAMADPVLAVDGKGLVLLANPAFSERCGRDPAGERLASLFDDETLEDAL---VEQGFRLPLREVTFMGQALLLD 156
Cdd:PRK11388 204 QLNALLESMDDGVIAWDEQGNLQFLNAQAARLLRLDATASQGRAITELLTLPAVLqqaIKQAHPLKHVEVTFESQGQFID 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 157 AT----PITEGpgEGERHLAgglltLYEPNrigERLAALHHDH----AEGFEMLLGDSQPIRTLKTRAQRVAALDAPLLI 228
Cdd:PRK11388 284 AVitlkPIIEG--QGTSFIL-----LLHPV---EQMRQLMTSQlgkvSHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 229 HGETGTGKELVARGCHALSARHNSPFLALNCAALPENLAESELFGYAPGAftgaQRGGKPGLLELAHQGTVFLDEIGEMS 308
Cdd:PRK11388 354 CGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTD----SENGRLSKFELAHGGTLFLEKVEYLS 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 309 PYLQAKLLRFLSDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSFREDLFYRLNVLSLEVPPLRERGHDILLLARHf 388
Cdd:PRK11388 430 PELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNN- 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 389 mqQACAQIQRPVCRLA--PGTYPALLSNRWPGNVRQLQNVIFRAAAICESSLVDIGDL--EIAGTAVARQNDGEVGSLEE 464
Cdd:PRK11388 509 --KLRSLEKRFSTRLKidDDALARLVSYRWPGNDFELRSVIENLALSSDNGRIRLSDLpeHLFTEQATDDVSATRLSTSL 586
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 489196486 465 AVEGFEK-ALLEKLYVSYPSTRQLAARLQTSHTAIAHRLRKYGIGPR 510
Cdd:PRK11388 587 SLAELEKeAIINAAQVCGGRIQEMAALLGIGRTTLWRKMKQHGIDAG 633
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
164-505 |
6.81e-44 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 162.69 E-value: 6.81e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 164 PGEGERHLAGGL-----LTLYEPNRIGERLAAlhhDHAEGFEMLLGDsqpIRT-------LKTRAQRVA-ALDAPLLIHG 230
Cdd:COG4650 142 PPRKRRAGAAGSytiidLDLSRYDAIASRFAQ---EQQEAVSFLKSG---IATrnaafnrLIEQIERVAiRSRAPILLTG 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 231 ETGTGKELVARGCHAL-SARH--NSPFLALNCAALPENLAESELFGYAPGAFTGAQrGGKPGLLELAHQGTVFLDEIGEM 307
Cdd:COG4650 216 PTGAGKSQLARRIYELkKARHqvSGRFVEVNCATLRGDGAMSALFGHVKGAFTGAV-SDRAGLLRSADGGVLFLDEIGEL 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 308 SPYLQAKLLRFLSDGSFRRVGGDREVRVDVRILSATHRNLEKMVAEGSFREDLFYRLNVLSLEVPPLRERGHDI-----L 382
Cdd:COG4650 295 GLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLWTFRLPGLAERREDIepnldY 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 383 LLARH---------FMQQACAQIqrpvcrLAPGTYPALLsnrWPGNVRQLQNVIFRAAAICESSLVDIG--DLEIA---- 447
Cdd:COG4650 375 ELARFareqgrrvrFNKEARARY------LAFATSPEAL---WSGNFRDLNASVTRMATLAEGGRITVAlvDEEIArlrr 445
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489196486 448 --GTAVARQNDGEVGSL--EEAVEG---FEKALLEK-LYVSYPST------RQL--AARLQTSHTAIAHRLRKY 505
Cdd:COG4650 446 lwQRAEAATGDDLLAELlgAEQAAEldlFDRVQLAAvIRVCRRSRslseagRTLfaVSRQQKASPNDADRLRKY 519
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
225-427 |
5.65e-30 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 124.45 E-value: 5.65e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 225 PLLIHGETGTGKELVARGCH--ALSAR---HNSPFLALNCAALPEN--LAESELFGYAPGAFTGAQRgGKPGLLELAHQG 297
Cdd:COG1221 132 HTLILGPTGVGKSFFAELMYeyAIEIGvlpEDAPFVVFNCADYANNpqLLMSQLFGYVKGAFTGADK-DKEGLIEKADGG 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 298 TVFLDEIGEMSPYLQAKLLRFLSDGSFRRVG-GDREVRVDVRILSATHRNLEkmvaegSFREDLFYRLNVLSLEVPPLRE 376
Cdd:COG1221 211 ILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGeTEKTRKANVRIIFATTEDPE------SSLLKTFLRRIPMVIKLPSLEE 284
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 489196486 377 RG-HDILLLARHFMQQACAQIQRPVcRLAPGTYPALLSNRWPGNVRQLQNVI 427
Cdd:COG1221 285 RSlEERLELIKHFFKEEAKRLNKPI-KVSKEVLKALLLYDCPGNIGQLKSDI 335
|
|
| ACT_TyrR |
cd04877 |
N-terminal ACT domain of the TyrR protein; ACT_TyrR: N-terminal ACT domain of the TyrR protein. ... |
1-73 |
7.86e-23 |
|
N-terminal ACT domain of the TyrR protein; ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence of cofactors or in the presence of phenylalanine alone, the TyrR protein exists as a dimer. However, in the presence of ATP and tyrosine the TyrR protein self-aggregates to form a hexamer. Members of this CD belong to the superfamily of ACT regulatory domains.
Pssm-ID: 153149 [Multi-domain] Cd Length: 74 Bit Score: 91.95 E-value: 7.86e-23
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489196486 1 MRIHVSFIDRVGITQEVLALLGGRNLNLDAVEMVP-PNVYIDAPTLSPEVLEELRAALLGIRGVQAMTVVDILP 73
Cdd:cd04877 1 MRLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPkGRIYLNFPTIEFEKLQTLMPEIRRIDGVEDVKTVPYMP 74
|
|
| HTH_TypR |
TIGR04381 |
TyrR family helix-turn-helix domain; This model describes the C-terminal DNA-binding ... |
461-508 |
1.27e-21 |
|
TyrR family helix-turn-helix domain; This model describes the C-terminal DNA-binding helix-turn-helix domain of several regulators of aromatic amino acid metabolism. Examples include TyrR in Escherichia coli and PhhR in Pseudomonas putida. Most members of this family have a sigma-54 interaction domain. [Regulatory functions, DNA interactions]
Pssm-ID: 275174 [Multi-domain] Cd Length: 49 Bit Score: 87.80 E-value: 1.27e-21
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 489196486 461 SLEEAVEGFEKALLEKLYVSYPSTRQLAARLQTSHTAIAHRLRKYGIG 508
Cdd:TIGR04381 1 SLDEIMKRFEASLLRRLYASYPSTRQLAKRLGVSHTAIANKLREYGIG 48
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
209-365 |
2.13e-21 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 90.67 E-value: 2.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 209 IRTLKTRAQRVAalDAPLLIHGETGTGKELVARGCHALSARHNSPFLALNCAALPENLAESELFGYapgaftgAQRGGKP 288
Cdd:cd00009 7 IEALREALELPP--PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGH-------FLVRLLF 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489196486 289 GLLELAHQGTVFLDEIGEMSPYLQAKLLRFLSDGSFrrvggDREVRVDVRILSATHRNLekmvaEGSFREDLFYRLN 365
Cdd:cd00009 78 ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLND-----LRIDRENVRVIGATNRPL-----LGDLDRALYDRLD 144
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
203-374 |
4.46e-19 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 83.55 E-value: 4.46e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 203 LGDSQPIRTLKTRAQRVAALDAPLLIHGETGTGKELVARGCHALSARHNSPFLALNCAALPENlaeselfgyapgaftga 282
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLE----------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 283 qrggkpgLLELAHQGTVFLDEIGEMSPYLQAKLLRFLsdgsfrrvggDREVRVDVRILSATHRNLEKMVAEGSFREDLFY 362
Cdd:pfam14532 64 -------LLEQAKGGTLYLKDIADLSKALQKGLLLLL----------AKAEGYRVRLVCTSSKDLPQLAAAGLFDEQLYF 126
|
170
....*....|..
gi 489196486 363 RLNVLSLEVPPL 374
Cdd:pfam14532 127 ELSALRLHVPPL 138
|
|
| HTH_50 |
pfam18024 |
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription ... |
460-507 |
1.01e-10 |
|
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription factor whose major function is to control the expression of genes important in the biosynthesis and transport of aromatic amino acids. This entry represents the C-terminal helix-turn-helix DNA-binding domain of TyrR and related proteins.
Pssm-ID: 407862 [Multi-domain] Cd Length: 50 Bit Score: 57.04 E-value: 1.01e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 489196486 460 GSLEEAVEGFEKALLEKLYVSYPSTRQLAARLQTSHTAIAHRLRKYGI 507
Cdd:pfam18024 2 MSLKEYVSYIERELIGAAYENYKSARKVAKALGLSHTTIANKMKRYGI 49
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
225-364 |
2.32e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.84 E-value: 2.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 225 PLLIHGETGTGKELVARGCHALSARHNSPFLALNCAALPENLAESELFGYAPGAFTGAQRGGKP-GLLELAHQ---GTVF 300
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLrLALALARKlkpDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489196486 301 LDEIGEMSPYLQAKLLRFLSDgsfRRVGGDREVRVDVRILSATHR--NLEKMVAEGSFREDLFYRL 364
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLLL 146
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
75-167 |
8.01e-06 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 47.92 E-value: 8.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489196486 75 QRRRLQLDALLAAMADPVLAVDGKGLVLLANPAFSERCGRDPA---GERLASLF-DDETLEDAL---VEQGFRLPLREVT 147
Cdd:COG3852 3 RESEELLRAILDSLPDAVIVLDADGRITYVNPAAERLLGLSAEellGRPLAELFpEDSPLRELLeraLAEGQPVTEREVT 82
|
90 100
....*....|....*....|....*
gi 489196486 148 FM---GQALLLD--ATPITEGPGEG 167
Cdd:COG3852 83 LRrkdGEERPVDvsVSPLRDAEGEG 107
|
|
| PAS_8 |
pfam13188 |
PAS domain; PAS domains are involved in many signalling proteins where they are used as a ... |
80-140 |
2.12e-04 |
|
PAS domain; PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Heme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. This domain recognizes oxygen and CO (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 463802 [Multi-domain] Cd Length: 65 Bit Score: 39.45 E-value: 2.12e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489196486 80 QLDALLAAMADPVLAVDGKGLVLLANPAFSERCGRDPAGERLASLFDDETLEDALVEQGFR 140
Cdd:pfam13188 2 RLRALFESSPDGILVLDEGGRIIYVNPAALELLGYELLGELLGELLDLLDPLLEDALELLR 62
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
75-136 |
7.91e-04 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 41.87 E-value: 7.91e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489196486 75 QRRRLQLDALLAAMADPVLAVDGKGLVLLANPAFSERCGRDPA---GERLASLFDDETLEDALVE 136
Cdd:COG5000 86 EERRRYLETILENLPAGVIVLDADGRITLANPAAERLLGIPLEeliGKPLEELLPELDLAELLRE 150
|
|
| PAS |
pfam00989 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
80-116 |
5.36e-03 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395786 [Multi-domain] Cd Length: 113 Bit Score: 37.01 E-value: 5.36e-03
10 20 30
....*....|....*....|....*....|....*..
gi 489196486 80 QLDALLAAMADPVLAVDGKGLVLLANPAFSERCGRDP 116
Cdd:pfam00989 2 DLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSR 38
|
|
| |
