|
Name |
Accession |
Description |
Interval |
E-value |
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
5-616 |
0e+00 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 679.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 5 HSKDHVDCVSRVLrNAARLPQAPVPTPILDSWRRSMEqHRLDPGSLQGPRILSQTLLDECRERSELFLRIASEEVARLHG 84
Cdd:COG3284 2 PSARHLREARWFL-SGGRLPAGGVRPLIARSWQRCRE-YGLDPDRPPAPRVLSGAELRELRERNEELLRAARPVLERLYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 85 RVRDADYCVLLTDAQGRTIDYRVESTIRNDCRKAGLYLGTCWSEGEEGTCGVAAVLTDRTAVTVHKRDHFRAAFIDLTCS 164
Cdd:COG3284 80 QLAGSGSVVLLTDADGVILDTLGDPRFLDRARRVGLAPGADWSEEARGTNAIGTALAEGRPVTVHGAEHFLEANHGLTCS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 165 AAPVFDPQGELLGVLDVSAvqspDDRRSQHLIRQMVAQSAREIENAFFMHSAQGHWVLRAHRAPGYVDSQPDYLFAWDAD 244
Cdd:COG3284 160 AAPIFDPDGRLLGVLDISG----PARSSQPHTLALVRAAARRIENRLFLRSFRREWRLRLHFLPEFLGSLSEGLLAFDED 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 245 GRLLALNPAARHYLRQRLGQVPSH-IGEVFD-----LDALHAAADQAPCLLRGQAGE---LHVRLSAPRAKARRLEREVP 315
Cdd:COG3284 236 GRIVAANRAARRLLGLADAALLGRpLEELFGldleaLPDGARRAPASPRPLRLRDGRrlgALLRLRPARRAARAAPAGAP 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 316 DDAAL------DPRIAESLRLAVRVKDRNLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGY 389
Cdd:COG3284 316 APAALaalaggDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGY 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 390 VGGAFTGAAAKGMRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAG 469
Cdd:COG3284 396 EPGAFTGARRKGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAG 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 470 GFREDLYFRLGGARFELPPLRERSDRLALIRRILDEETAHCGvRIELGEAALECLLGYRWPGNVRQLRHVLRYACALCGG 549
Cdd:COG3284 476 RFREDLYYRLNGLTLTLPPLREREDLPALIEHLLRELAAGRG-PLRLSPEALALLAAYPWPGNVRELRNVLRTALALADG 554
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489203914 550 ATLQLADLPAELRGERRTPASACESGGGP----ERDALLDALVRHRWKPMAAARELGISRATLYRRVRRHG 616
Cdd:COG3284 555 GVITVEDLPDELRAELAAAAPAAAAPLTSleeaERDAILRALRACGGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
321-479 |
3.06e-89 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 273.89 E-value: 3.06e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 321 DPRIAESLRLAVRVKDRNLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFTGAAAK 400
Cdd:pfam00158 5 SPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGADSD 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489203914 401 GmRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRL 479
Cdd:pfam00158 85 R-KGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYYRL 162
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
324-609 |
3.85e-81 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 266.76 E-value: 3.85e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 324 IAESLRLAVRVKDRNLPVLIQGETGAGKEVFARQLHQASARRDkPFVALNCAAIPESLIESELFGYVGGAFTGAAAKGMR 403
Cdd:NF041552 276 IIKKIEIAKQVAKTNSSVLITGESGTGKEVFARAIHQASGRKG-PFVPVNCSAIPEELFESEFFGYEEGAFTGALKKGKI 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 404 GLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRLGGAR 483
Cdd:NF041552 355 GKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFREDLYYRLNVVE 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 484 FELPPLRERS-DRLALIRRILDEETAHCGVRI-ELGEAALECLLGYRWPGNVRQLRHVLRYACALCGGATLQLADLPAEL 561
Cdd:NF041552 435 IELPPLRERKeDIPLLINYFLKEICKENNKEIpKIDKEVYDILQNYKWKGNIRELKNTIEHLVVLSKNGTITKDSIPEYI 514
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 489203914 562 RGErrTPASACESGGGP----------ERDALLDALVRHRWKPMAAARELGISRATLY 609
Cdd:NF041552 515 LES--VKKKEDEEGDYPldlnkaveklEIDTIKKALEMSNGNKAKAAKLLNIPRSTLY 570
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
289-618 |
5.32e-81 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 264.34 E-value: 5.32e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 289 LRGQAGELHVRLSAPRAKARRlEREVPDDAALDPRIAESLRLavrVKDRNLPVLIQGETGAGKEVFARQLHQASARRDKP 368
Cdd:PRK05022 165 LESQAELPQDVAEFLRQEALK-EGEMIGQSPAMQQLKKEIEV---VAASDLNVLILGETGVGKELVARAIHAASPRADKP 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 369 FVALNCAAIPESLIESELFGYVGGAFTGaAAKGMRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQ 448
Cdd:PRK05022 241 LVYLNCAALPESLAESELFGHVKGAFTG-AISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 449 AVDIQVICATHRDLAALVAAGGFREDLYFRLGGARFELPPLRER-SDRLALIRRILDEETAHCGVR-IELGEAALECLLG 526
Cdd:PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERgDDVLLLAGYFLEQNRARLGLRsLRLSPAAQAALLA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 527 YRWPGNVRQLRHVLRYAC--ALCGGA----TLQLADLPAELRGERRTPASACESGGGP-----------ERDALLDALVR 589
Cdd:PRK05022 400 YDWPGNVRELEHVISRAAllARARGAgrivTLEAQHLDLPAEVALPPPEAAAAPAAVVsqnlreateafQRQLIRQALAQ 479
|
330 340
....*....|....*....|....*....
gi 489203914 590 HRWKPMAAARELGISRATLYRRVRRHGIR 618
Cdd:PRK05022 480 HQGNWAAAARALELDRANLHRLAKRLGLK 508
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
322-613 |
7.07e-78 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 255.05 E-value: 7.07e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 322 PRIAESLRLAVRVKDRNLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFTGAAAKg 401
Cdd:TIGR01818 141 PAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTR- 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 402 MRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRLGG 481
Cdd:TIGR01818 220 RQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNV 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 482 ARFELPPLRERSDRLA-LIRRILDEETAHCGVRIE-LGEAALECLLGYRWPGNVRQLRHVLRYACALCGGATLQLADLPA 559
Cdd:TIGR01818 300 IRIHLPPLRERREDIPrLARHFLALAARELDVEPKlLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGDEVLVSDLPA 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 560 ELRGERRtPASACESGGGPERDALLDALVRHRW----------------KPM-------------AAARELGISRATLYR 610
Cdd:TIGR01818 380 ELALTGR-PASAPDSDGQDSWDEALEAWAKQALsrgeqglldralpefeRPLleaalqhtrghkqEAAALLGWGRNTLTR 458
|
...
gi 489203914 611 RVR 613
Cdd:TIGR01818 459 KLK 461
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
323-488 |
1.62e-24 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 99.91 E-value: 1.62e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 323 RIAESLRLAVRVKDRNlPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVggaftgaAAKGM 402
Cdd:cd00009 5 EAIEALREALELPPPK-NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-------LVRLL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 403 RGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVaplgaARRQAVDIQVICATHRDLaalvaAGGFREDLYFRLgGA 482
Cdd:cd00009 77 FELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLND-----LRIDRENVRVIGATNRPL-----LGDLDRALYDRL-DI 145
|
....*.
gi 489203914 483 RFELPP 488
Cdd:cd00009 146 RIVIPL 151
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
337-480 |
1.85e-13 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 68.17 E-value: 1.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 337 RNLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFT----GAAAKGMRGLLQQADGG 412
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAsgsgELRLRLALALARKLKPD 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 413 TLFLDEIGDMPLGLQTRLLRVLAEGEvapLGAARRQAVDIQVICATHR--DLAALVAAGGFREDLYFRLG 480
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLEELR---LLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLLLI 147
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
5-616 |
0e+00 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 679.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 5 HSKDHVDCVSRVLrNAARLPQAPVPTPILDSWRRSMEqHRLDPGSLQGPRILSQTLLDECRERSELFLRIASEEVARLHG 84
Cdd:COG3284 2 PSARHLREARWFL-SGGRLPAGGVRPLIARSWQRCRE-YGLDPDRPPAPRVLSGAELRELRERNEELLRAARPVLERLYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 85 RVRDADYCVLLTDAQGRTIDYRVESTIRNDCRKAGLYLGTCWSEGEEGTCGVAAVLTDRTAVTVHKRDHFRAAFIDLTCS 164
Cdd:COG3284 80 QLAGSGSVVLLTDADGVILDTLGDPRFLDRARRVGLAPGADWSEEARGTNAIGTALAEGRPVTVHGAEHFLEANHGLTCS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 165 AAPVFDPQGELLGVLDVSAvqspDDRRSQHLIRQMVAQSAREIENAFFMHSAQGHWVLRAHRAPGYVDSQPDYLFAWDAD 244
Cdd:COG3284 160 AAPIFDPDGRLLGVLDISG----PARSSQPHTLALVRAAARRIENRLFLRSFRREWRLRLHFLPEFLGSLSEGLLAFDED 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 245 GRLLALNPAARHYLRQRLGQVPSH-IGEVFD-----LDALHAAADQAPCLLRGQAGE---LHVRLSAPRAKARRLEREVP 315
Cdd:COG3284 236 GRIVAANRAARRLLGLADAALLGRpLEELFGldleaLPDGARRAPASPRPLRLRDGRrlgALLRLRPARRAARAAPAGAP 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 316 DDAAL------DPRIAESLRLAVRVKDRNLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGY 389
Cdd:COG3284 316 APAALaalaggDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGY 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 390 VGGAFTGAAAKGMRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAG 469
Cdd:COG3284 396 EPGAFTGARRKGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAG 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 470 GFREDLYFRLGGARFELPPLRERSDRLALIRRILDEETAHCGvRIELGEAALECLLGYRWPGNVRQLRHVLRYACALCGG 549
Cdd:COG3284 476 RFREDLYYRLNGLTLTLPPLREREDLPALIEHLLRELAAGRG-PLRLSPEALALLAAYPWPGNVRELRNVLRTALALADG 554
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489203914 550 ATLQLADLPAELRGERRTPASACESGGGP----ERDALLDALVRHRWKPMAAARELGISRATLYRRVRRHG 616
Cdd:COG3284 555 GVITVEDLPDELRAELAAAAPAAAAPLTSleeaERDAILRALRACGGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
231-618 |
3.13e-137 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 408.01 E-value: 3.13e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 231 VDSQPDYLFAWDADGRLLALNPAARHYLR----QRLGQvpsHIGEVFDLDALHAaadqapCLLRGQAGELHVRLSAPRAK 306
Cdd:COG3829 17 LDSLDDGIIVVDADGRITYVNRAAERILGlpreEVIGK---NVTELIPNSPLLE------VLKTGKPVTGVIQKTGGKGK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 307 ---------------------------ARRLEREVPDDAAL---------------DPRIAESLRLAVRVKDRNLPVLIQ 344
Cdd:COG3829 88 tvivtaipifedgevigavetfrditeLKRLERKLREEELErglsakytfddiigkSPAMKELLELAKRVAKSDSTVLIL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 345 GETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFTGAAAKGMRGLLQQADGGTLFLDEIGDMPL 424
Cdd:COG3829 168 GESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFELADGGTLFLDEIGEMPL 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 425 GLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRLGGARFELPPLRER-SDRLALIRRIL 503
Cdd:COG3829 248 SLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERkEDIPLLAEHFL 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 504 DEETAHCGVRI-ELGEAALECLLGYRWPGNVRQLRHVLRYACALCGGATLQLADLPAELRGERRTPASACESGGGP---- 578
Cdd:COG3829 328 EKFNKKYGKNIkGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVITPEHLPEYLLEEAEAASAAEEGSLKEalee 407
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 489203914 579 -ERDALLDALVRHRWKPMAAARELGISRATLYRRVRRHGIR 618
Cdd:COG3829 408 vEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKYGIK 448
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
306-616 |
3.00e-114 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 347.72 E-value: 3.00e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 306 KARRLEREVPDDAAL---DPRIAESLRLAVRVKDRNLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLI 382
Cdd:COG2204 119 ERRRLRRENAEDSGLigrSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELL 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 383 ESELFGYVGGAFTGAAAKGmRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDL 462
Cdd:COG2204 199 ESELFGHEKGAFTGAVARR-IGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDL 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 463 AALVAAGGFREDLYFRLGGARFELPPLRER-SDRLALIRRILDEETAHCGVRIELGEAALECLLGYRWPGNVRQLRHVLR 541
Cdd:COG2204 278 EELVEEGRFREDLYYRLNVFPIELPPLRERrEDIPLLARHFLARFAAELGKPVKLSPEALEALLAYDWPGNVRELENVIE 357
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489203914 542 YACALCGGATLQLADLPAELRgerrtpasacesggGPERDALLDALVRHRWKPMAAARELGISRATLYRRVRRHG 616
Cdd:COG2204 358 RAVILADGEVITAEDLPEALE--------------EVERELIERALEETGGNVSRAAELLGISRRTLYRKLKKYG 418
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
321-479 |
3.06e-89 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 273.89 E-value: 3.06e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 321 DPRIAESLRLAVRVKDRNLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFTGAAAK 400
Cdd:pfam00158 5 SPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGADSD 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489203914 401 GmRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRL 479
Cdd:pfam00158 85 R-KGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYYRL 162
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
212-618 |
7.48e-86 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 277.46 E-value: 7.48e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 212 FMHSAQGHWVLRAhrapgYVDSQPDYLFAWDADGRLLALNPAARHYLRQRLGQVP-SHIGEVFD-------LDALHAAAD 283
Cdd:COG3283 72 FMPSEREHLELDA-----LLEALPDPVFSIDLKGKIELANPAALSLLGLSEEELIgQPLSELLKgfnfsrwLESNEPRPQ 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 284 QAPCLLRGQ--------------------AGELHVRLSAPRAKARRLEREVPDDAALDPRIAES------LRLAVRVKDR 337
Cdd:COG3283 147 SERVVINGQdyladilpiylpdeegksilAGAVVTLKSAARLGEQLQALQVNDDSGFDHIVASSpkmrqvIRQAKKMAML 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 338 NLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFtGAAAKGMRGLLQQADGGTLFLD 417
Cdd:COG3283 227 DAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAF-GNAREGKKGLFEQANGGTVFLD 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 418 EIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRLGGARFELPPLRER-SDRL 496
Cdd:COG3283 306 EIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYYRLNVLTLTLPPLRERkSDIL 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 497 ALIRRILDEETAHCGV-RIELGEAALECLLGYRWPGNVRQLRHVLRYACALCGGATLQLADLpaelrgerRTPASACESG 575
Cdd:COG3283 386 PLAEHFVARFSQQLGRpRPRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLEGDELTPEDL--------QLPEYAASAG 457
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 489203914 576 -GGPERDALLDALVRHRWKPMAA------------ARELGISRATLYRRVRRHGIR 618
Cdd:COG3283 458 lLDDLLEGSLDEIVKRFERSLLRrlypsypstrklAKRLGVSHTAIANKLREYGIG 513
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
324-609 |
3.85e-81 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 266.76 E-value: 3.85e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 324 IAESLRLAVRVKDRNLPVLIQGETGAGKEVFARQLHQASARRDkPFVALNCAAIPESLIESELFGYVGGAFTGAAAKGMR 403
Cdd:NF041552 276 IIKKIEIAKQVAKTNSSVLITGESGTGKEVFARAIHQASGRKG-PFVPVNCSAIPEELFESEFFGYEEGAFTGALKKGKI 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 404 GLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRLGGAR 483
Cdd:NF041552 355 GKFELANNGTLFLDEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFREDLYYRLNVVE 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 484 FELPPLRERS-DRLALIRRILDEETAHCGVRI-ELGEAALECLLGYRWPGNVRQLRHVLRYACALCGGATLQLADLPAEL 561
Cdd:NF041552 435 IELPPLRERKeDIPLLINYFLKEICKENNKEIpKIDKEVYDILQNYKWKGNIRELKNTIEHLVVLSKNGTITKDSIPEYI 514
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 489203914 562 RGErrTPASACESGGGP----------ERDALLDALVRHRWKPMAAARELGISRATLY 609
Cdd:NF041552 515 LES--VKKKEDEEGDYPldlnkaveklEIDTIKKALEMSNGNKAKAAKLLNIPRSTLY 570
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
289-618 |
5.32e-81 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 264.34 E-value: 5.32e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 289 LRGQAGELHVRLSAPRAKARRlEREVPDDAALDPRIAESLRLavrVKDRNLPVLIQGETGAGKEVFARQLHQASARRDKP 368
Cdd:PRK05022 165 LESQAELPQDVAEFLRQEALK-EGEMIGQSPAMQQLKKEIEV---VAASDLNVLILGETGVGKELVARAIHAASPRADKP 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 369 FVALNCAAIPESLIESELFGYVGGAFTGaAAKGMRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQ 448
Cdd:PRK05022 241 LVYLNCAALPESLAESELFGHVKGAFTG-AISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 449 AVDIQVICATHRDLAALVAAGGFREDLYFRLGGARFELPPLRER-SDRLALIRRILDEETAHCGVR-IELGEAALECLLG 526
Cdd:PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERgDDVLLLAGYFLEQNRARLGLRsLRLSPAAQAALLA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 527 YRWPGNVRQLRHVLRYAC--ALCGGA----TLQLADLPAELRGERRTPASACESGGGP-----------ERDALLDALVR 589
Cdd:PRK05022 400 YDWPGNVRELEHVISRAAllARARGAgrivTLEAQHLDLPAEVALPPPEAAAAPAAVVsqnlreateafQRQLIRQALAQ 479
|
330 340
....*....|....*....|....*....
gi 489203914 590 HRWKPMAAARELGISRATLYRRVRRHGIR 618
Cdd:PRK05022 480 HQGNWAAAARALELDRANLHRLAKRLGLK 508
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
322-613 |
7.07e-78 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 255.05 E-value: 7.07e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 322 PRIAESLRLAVRVKDRNLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFTGAAAKg 401
Cdd:TIGR01818 141 PAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTR- 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 402 MRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRLGG 481
Cdd:TIGR01818 220 RQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNV 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 482 ARFELPPLRERSDRLA-LIRRILDEETAHCGVRIE-LGEAALECLLGYRWPGNVRQLRHVLRYACALCGGATLQLADLPA 559
Cdd:TIGR01818 300 IRIHLPPLRERREDIPrLARHFLALAARELDVEPKlLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGDEVLVSDLPA 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 560 ELRGERRtPASACESGGGPERDALLDALVRHRW----------------KPM-------------AAARELGISRATLYR 610
Cdd:TIGR01818 380 ELALTGR-PASAPDSDGQDSWDEALEAWAKQALsrgeqglldralpefeRPLleaalqhtrghkqEAAALLGWGRNTLTR 458
|
...
gi 489203914 611 RVR 613
Cdd:TIGR01818 459 KLK 461
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
302-614 |
1.20e-76 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 253.87 E-value: 1.20e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 302 APRAKARRleREVPDDAALDPRIAESLRLAVRVKDRNLP-VLIQGETGAGKEVFARQLHQA--------SARRDKPFVAL 372
Cdd:PRK15424 207 ATRNALRT--RYVLGDLLGQSPQMEQVRQTILLYARSSAaVLIQGETGTGKELAAQAIHREyfarhdarQGKKSHPFVAV 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 373 NCAAIPESLIESELFGYVGGAFTGAAAKGMRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDI 452
Cdd:PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDV 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 453 QVICATHRDLAALVAAGGFREDLYFRLGGARFELPPLRERSDRLALI-----RRILDEETA--HCGVRIELgEAALECLL 525
Cdd:PRK15424 365 RVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLaesflKQSLAALSApfSAALRQGL-QQCETLLL 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 526 GYRWPGNVRQLRHVL-RYACALCGGATLQLAdlPAELrgERRTPASACESGGGPERDALL----DALVRHRWKPMAAARE 600
Cdd:PRK15424 444 HYDWPGNVRELRNLMeRLALFLSVEPTPDLT--PQFL--QLLLPELARESAKTPAPRLLAatlqQALERFNGDKTAAANY 519
|
330
....*....|....
gi 489203914 601 LGISRATLYRRVRR 614
Cdd:PRK15424 520 LGISRTTLWRRLKA 533
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
308-618 |
2.26e-76 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 250.44 E-value: 2.26e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 308 RRLEREVPDDA-----ALDPRIAESLRLAVRVKDRNLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLI 382
Cdd:TIGR02915 127 RRLQSALGGTAlrgliTSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 383 ESELFGYVGGAFTGAAaKGMRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDL 462
Cdd:TIGR02915 207 ESELFGYEKGAFTGAV-KQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDL 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 463 AALVAAGGFREDLYFRLGGARFELPPLRERSDRLALIRRILDEETAHCGVRIELG--EAALECLLGYRWPGNVRQLRHVL 540
Cdd:TIGR02915 286 KRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGftDDALRALEAHAWPGNVRELENKV 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 541 RYACALCGGATLQLADL--PAELRGERRTPASACESGGGPERDALLDALVRHRWKPMAAARELGISRATLYRRVRRHGIR 618
Cdd:TIGR02915 366 KRAVIMAEGNQITAEDLglDARERAETPLEVNLREVRERAEREAVRKAIARVDGNIARAAELLGITRPTLYDLMKKHGIK 445
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
277-613 |
2.96e-76 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 252.47 E-value: 2.96e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 277 ALHAAADQAPCLLRGQAGELHvrlSAPRAKARrlEREVPDDAALDPRIAESLRLAVRVKDRN-LPVLIQGETGAGKEVFA 355
Cdd:TIGR02329 178 AFDDALDVARATRLRQAATLR---SATRNQLR--TRYRLDDLLGASAPMEQVRALVRLYARSdATVLILGESGTGKELVA 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 356 RQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFTGAAAKGMRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLA 435
Cdd:TIGR02329 253 QAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 436 EGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRLGGARFELPPLRERSDRLALIRRILDEEtAHCGVRIE 515
Cdd:TIGR02329 333 EREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQ-AAAALRLP 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 516 LGEAAL-------ECLLGYRWPGNVRQLRHVL-RYACALCGGATLQL------ADLP--AELRGERRTPASACESGGGPE 579
Cdd:TIGR02329 412 DSEAAAqvlagvaDPLQRYPWPGNVRELRNLVeRLALELSAMPAGALtpdvlrALAPelAEASGKGKTSALSLRERSRVE 491
|
330 340 350
....*....|....*....|....*....|....
gi 489203914 580 RDALLDALVRHRWKPMAAARELGISRATLYRRVR 613
Cdd:TIGR02329 492 ALAVRAALERFGGDRDAAAKALGISRTTLWRRLK 525
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
273-617 |
9.83e-72 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 238.59 E-value: 9.83e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 273 FDLDALHAAADQAPCL--LRGQAGELHVRLSAPRAKARRLERevpddaalDPRIAESLRLAVRVKDRNLPVLIQGETGAG 350
Cdd:PRK11361 107 FDLDELNLIVQRALQLqsMKKEIRHLHQALSTSWQWGHILTN--------SPAMMDICKDTAKIALSQASVLISGESGTG 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 351 KEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFTGAAAKgMRGLLQQADGGTLFLDEIGDMPLGLQTRL 430
Cdd:PRK11361 179 KELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTL-RQGLFERANEGTLLLDEIGEMPLVLQAKL 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 431 LRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRLGGARFELPPLRERSDRLALIRRILDEETAHC 510
Cdd:PRK11361 258 LRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSE 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 511 GVR--IELGEAALECLLGYRWPGNVRQLRHVLRYACALCGGATLQLADLPAELRGERRTPASACESGGGP---------- 578
Cdd:PRK11361 338 NQRdiIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGErnlkeeikrv 417
|
330 340 350
....*....|....*....|....*....|....*....
gi 489203914 579 ERDALLDALVRHRWKPMAAARELGISRATLYRRVRRHGI 617
Cdd:PRK11361 418 EKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGI 456
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
289-620 |
1.94e-71 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 240.00 E-value: 1.94e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 289 LRGQAGELHVRLSAPR----AKARRLEREVPDDAALDPR---------IAES------LRLAVRVKDRNLPVLIQGETGA 349
Cdd:TIGR01817 151 LIGQTVRLHRLVAQRRerliAEAVQLSKQLRDKAPEIARrrsgkedgiIGKSpamrqvVDQARVVARSNSTVLLRGESGT 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 350 GKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFTGAAAKgMRGLLQQADGGTLFLDEIGDMPLGLQTR 429
Cdd:TIGR01817 231 GKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQ-RKGRFELADGGTLFLDEIGEISPAFQAK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 430 LLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRLGGARFELPPLRERSDRLALIRRILDEETAH 509
Cdd:TIGR01817 310 LLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNR 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 510 CGVR-IELGEAALECLLGYRWPGNVRQLRHVLRYACALCGGATLQLADL------------------------PAELRGE 564
Cdd:TIGR01817 390 ENGRpLTITPSAIRVLMSCKWPGNVRELENCLERTATLSRSGTITRSDFscqsgqclspmlaktcphghisidPLAGTTP 469
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489203914 565 RRTPASACESGG----GP---ERDALLDALVRHRWKPMAAARELGISRATLYRRVRRHGIRMP 620
Cdd:TIGR01817 470 PHSPASAALPGEpglsGPtlsERERLIAALEQAGWVQAKAARLLGMTPRQVGYALRKLNIEMK 532
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
274-617 |
4.60e-70 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 233.58 E-value: 4.60e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 274 DLDALHAAADQApcllrgqagelhVRLSAPrAKARRLEREVPDDAALDPRIAESLRLavrVKDRNLPVLIQGETGAGKEV 353
Cdd:PRK15115 109 DRDALYKAIDDA------------LEQSAP-ATDERWREAIVTRSPLMLRLLEQARM---VAQSDVSVLINGQSGTGKEI 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 354 FARQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFTGAAAKgMRGLLQQADGGTLFLDEIGDMPLGLQTRLLRV 433
Cdd:PRK15115 173 LAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSN-REGLFQAAEGGTLFLDEIGDMPAPLQVKLLRV 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 434 LAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRLGGARFELPPLRERSDRLALIRRILDEETA--HCG 511
Cdd:PRK15115 252 LQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAerHKP 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 512 VRIELGEAALECLLGYRWPGNVRQLRHVLRYACALCGGATLQLADLPAELRGERRTPASACESGGGPERDALLDALVRHR 591
Cdd:PRK15115 332 FVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFELNYLRKLLQITK 411
|
330 340
....*....|....*....|....*.
gi 489203914 592 WKPMAAARELGISRATLYRRVRRHGI 617
Cdd:PRK15115 412 GNVTHAARMAGRNRTEFYKLLSRHEL 437
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
27-617 |
3.88e-69 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 236.50 E-value: 3.88e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 27 PVPTPILDSWRRSmeQHRLDPGSLQGPRILSQTLLDECRERSELFLRIASEEVARLHGRVRDADYCVLLTDAQGRTIDYR 106
Cdd:PRK11388 11 GISPLIATSWERC--NKLMKRETWNVPHQAQGVTFASIYRRKKALLTLGQAALEDAWEYMADRECALLILDETGCILSRN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 107 VESTIRNDCRKAGLYLGTCWSEGEEGTCGVAAVLTDRTAVTVHKRDHFRAAFIDLTCSAAPVFDPQGELLGVldVSAVQS 186
Cdd:PRK11388 89 GDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQALHNWAFCATPVFDSKGRLTGT--IALACP 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 187 PDDRRSQHLirQMVAQSAREIENAFFMHS--AQGHWVLRAHRApgYVDSQPDYLFAWDADGRLLALNPAARHYLR----Q 260
Cdd:PRK11388 167 VEQTSAADL--PLTLSIAREVGNLLLTDSllAESNRHLNQLNA--LLESMDDGVIAWDEQGNLQFLNAQAARLLRldatA 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 261 RLGQvpsHIGEVFDLDA-LHAAADQAPCL----------------------LRGQAGELHVRLSAPRAKARRLE-----R 312
Cdd:PRK11388 243 SQGR---AITELLTLPAvLQQAIKQAHPLkhvevtfesqgqfidavitlkpIIEGQGTSFILLLHPVEQMRQLMtsqlgK 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 313 EVPDDAAL---DPRIAESLRLAVRVKDRNLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELfgy 389
Cdd:PRK11388 320 VSHTFDHMpqdSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEF--- 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 390 VGGAFTGAAAkGMRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAG 469
Cdd:PRK11388 397 LGSDRTDSEN-GRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQN 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 470 GFREDLYFRLGGARFELPPLRER-SDRLALIRRILDEETAHCGVRIELGEAALECLLGYRWPGNVRQLRHVLRYACALCG 548
Cdd:PRK11388 476 RFSRQLYYALHAFEITIPPLRMRrEDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSD 555
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489203914 549 GATLQLADLPAELRGERrtpaSACESGGGP----------ERDALLDALVRHRWKPMAAARELGISRATLYRRVRRHGI 617
Cdd:PRK11388 556 NGRIRLSDLPEHLFTEQ----ATDDVSATRlstslslaelEKEAIINAAQVCGGRIQEMAALLGIGRTTLWRKMKQHGI 630
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
322-617 |
1.10e-67 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 228.22 E-value: 1.10e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 322 PRIAESLRLAVRVKDRNLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFTGAAaKG 401
Cdd:PRK10923 145 PAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGAN-TI 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 402 MRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRLGG 481
Cdd:PRK10923 224 RQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 482 ARFELPPLRERSDRLA-LIRRILDEETAHCGVRIE-LGEAALECLLGYRWPGNVRQLRHVLRYACALCGGATLQLADLPA 559
Cdd:PRK10923 304 IRVHLPPLRERREDIPrLARHFLQVAARELGVEAKlLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPG 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 560 ELRgERRTPAS-------------------ACESG-------GGP--ERDALLDALVRHRWKPMAAARELGISRATLYRR 611
Cdd:PRK10923 384 ELF-ESTVPEStsqmqpdswatllaqwadrALRSGhqnllseAQPelERTLLTTALRHTQGHKQEAARLLGWGRNTLTRK 462
|
....*.
gi 489203914 612 VRRHGI 617
Cdd:PRK10923 463 LKELGM 468
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
341-614 |
5.23e-66 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 222.98 E-value: 5.23e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 341 VLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFTGAAaKGMRGLLQQADGGTLFLDEIG 420
Cdd:PRK10365 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGAD-KRREGRFVEADGGTLFLDEIG 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 421 DMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRLGGARFELPPLRERSDRLALIR 500
Cdd:PRK10365 244 DISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 501 RILDEETAHCGVRIELG--EAALECLLGYRWPGNVRQLRHVLRYACALCGGATLQLADLPAELRGE--RRTPASACESGG 576
Cdd:PRK10365 324 GHFLQRFAERNRKAVKGftPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTpiPLGQSQDIQPLV 403
|
250 260 270
....*....|....*....|....*....|....*...
gi 489203914 577 GPERDALLDALVRHRWKPMAAARELGISRATLYRRVRR 614
Cdd:PRK10365 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
212-559 |
6.51e-59 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 206.08 E-value: 6.51e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 212 FMHSAQGHWVLRAhrapgYVDSQPDYLFAWDADGRLLALNPAARHYLRQRLGQVPSH-IGEVFD-------LDALHAAAD 283
Cdd:PRK10820 72 FMPSEREHRALSA-----LLEALPEPVLSIDMKGKVELANPASCQLFGQSEEKLRNHtAAQLINgfnflrwLESEPQDSH 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 284 QAPCLLRGQ--------------------AGELHVRLSAPRAKARRLEREVPDDAALDPRIAESLRLAVRVKD-RNL--- 339
Cdd:PRK10820 147 NEHVVINGQdflmeitpvylqdendqhvlVGAVVMLRSTARMGRQLQNLAVNDDSAFSQIVAVSPKMRQVVEQaRKLaml 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 340 --PVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFTGaAAKGMRGLLQQADGGTLFLD 417
Cdd:PRK10820 227 daPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPN-ALEGKKGFFEQANGGSVLLD 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 418 EIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRLGGARFELPPLRER-SDRL 496
Cdd:PRK10820 306 EIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRpQDIM 385
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 497 AL----IRRILDEEtahcGV-RIELGEAALECLLGYRWPGNVRQLRHVLRYACALCGGATLQLAD--LPA 559
Cdd:PRK10820 386 PLtelfVARFADEQ----GVpRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDilLPD 451
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
343-618 |
9.49e-59 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 200.46 E-value: 9.49e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 343 IQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESelfgyvggaftgaaakgmrgllqqadggtlfldeigdm 422
Cdd:COG3604 120 ILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES-------------------------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 423 plgLQtrllrvlaEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRLGGARFELPPLRER-SDRLALIRR 501
Cdd:COG3604 162 ---LQ--------EGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLRERrEDIPLLAEH 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 502 ILDEETAHCGVRIE-LGEAALECLLGYRWPGNVRQLRHVLRYACALCGGATLQLADLPAELRGERRTpasacesgggPER 580
Cdd:COG3604 231 FLEKFSRRLGKPILrLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDLAPGSREALEE----------VER 300
|
250 260 270
....*....|....*....|....*....|....*...
gi 489203914 581 DALLDALVRHRWKPMAAARELGISRATLYRRVRRHGIR 618
Cdd:COG3604 301 EHILEALERTGGNIAGAARLLGLTPSTLRSRMKKLGIK 338
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
341-617 |
3.04e-57 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 205.06 E-value: 3.04e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 341 VLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFTGAAAKGMrGLLQQADGGTLFLDEIG 420
Cdd:PRK15429 402 VLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI-GRFELADKSSLFLDEVG 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 421 DMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRLGGARFELPPLRERSDRLALIR 500
Cdd:PRK15429 481 DMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLV 560
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 501 RILDEETA-HCGVRIELGEA-ALECLLGYRWPGNVRQLRHVLRYACALCGGATLQLAdLPAELRGERRTPASACESGGGP 578
Cdd:PRK15429 561 KAFTFKIArRMGRNIDSIPAeTLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS-LPDITLPEPETPPAATVVAQEG 639
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 489203914 579 ERDALLDALVRHRWK-----PMAAARELGISRATLYRRVRRHGI 617
Cdd:PRK15429 640 EDEYQLIVRVLKETNgvvagPKGAAQRLGLKRTTLLSRMKRLGI 683
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
338-539 |
4.78e-55 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 189.88 E-value: 4.78e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 338 NLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFTGAAaKGMRGLLQQADGGTLFLD 417
Cdd:PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQ-KRHPGRFERADGGTLFLD 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 418 EIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDLYFRLGGARFELPPLRERSDRLA 497
Cdd:PRK11608 108 ELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIM 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 489203914 498 LirriLDEETAHCGVRiELG--------EAALECLLGYRWPGNVRQLRHV 539
Cdd:PRK11608 188 L----MAEHFAIQMCR-ELGlplfpgftERARETLLNYRWPGNIRELKNV 232
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
245-536 |
4.62e-39 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 151.14 E-value: 4.62e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 245 GRLLALNPAARhylrQRLGQVPSHigEVFDLDalhaaadqapcllrgqagelhvrLSAPRAKARRLEREVPDD------- 317
Cdd:COG4650 135 GRLLQTSPPRK----RRAGAAGSY--TIIDLD-----------------------LSRYDAIASRFAQEQQEAvsflksg 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 318 -----AALDPRIAESLRLAVRVKDrnlPVLIQGETGAGKEVFARQLHQASARRDK---PFVALNCAAIPESLIESELFGY 389
Cdd:COG4650 186 iatrnAAFNRLIEQIERVAIRSRA---PILLTGPTGAGKSQLARRIYELKKARHQvsgRFVEVNCATLRGDGAMSALFGH 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 390 VGGAFTGAAAKgMRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAG 469
Cdd:COG4650 263 VKGAFTGAVSD-RAGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEG 341
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489203914 470 GFREDLYFRLGGARFELPPLRERSDRLAL-IRRILDEETAHCGVRIELGEAALECLLGY------RWPGNVRQL 536
Cdd:COG4650 342 RFREDLLARINLWTFRLPGLAERREDIEPnLDYELARFAREQGRRVRFNKEARARYLAFatspeaLWSGNFRDL 415
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
339-545 |
2.98e-34 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 139.09 E-value: 2.98e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 339 LPVLIQGETGAGKEVFARQLHQ---ASAR--RDKPFVALNCAAI---PEsLIESELFGYVGGAFTGA-AAKgmRGLLQQA 409
Cdd:COG1221 131 LHTLILGPTGVGKSFFAELMYEyaiEIGVlpEDAPFVVFNCADYannPQ-LLMSQLFGYVKGAFTGAdKDK--EGLIEKA 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 410 DGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLG-AARRQAVDIQVICATHRDL-AALVAAggfredlyfrlggarF--- 484
Cdd:COG1221 208 DGGILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGeTEKTRKANVRIIFATTEDPeSSLLKT---------------Flrr 272
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489203914 485 -----ELPPLRERS--DRLALIRRILDEETAHCGVRIELGEAALECLLGYRWPGNVRQLRHVLRYACA 545
Cdd:COG1221 273 ipmviKLPSLEERSleERLELIKHFFKEEAKRLNKPIKVSKEVLKALLLYDCPGNIGQLKSDIQLACA 340
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
323-488 |
1.62e-24 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 99.91 E-value: 1.62e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 323 RIAESLRLAVRVKDRNlPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVggaftgaAAKGM 402
Cdd:cd00009 5 EAIEALREALELPPPK-NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-------LVRLL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 403 RGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVaplgaARRQAVDIQVICATHRDLaalvaAGGFREDLYFRLgGA 482
Cdd:cd00009 77 FELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLND-----LRIDRENVRVIGATNRPL-----LGDLDRALYDRL-DI 145
|
....*.
gi 489203914 483 RFELPP 488
Cdd:cd00009 146 RIVIPL 151
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
323-489 |
4.55e-24 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 98.18 E-value: 4.55e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 323 RIAESLRLAVRvkdRNLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESlieselfgyvggaftgaaakgm 402
Cdd:pfam14532 9 EIKRRLEQAAQ---STLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLE---------------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 403 rgLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEvaplgaarrqAVDIQVICATHRDLAALVAAGGFREDLYFRLGGA 482
Cdd:pfam14532 64 --LLEQAKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYFELSAL 131
|
....*..
gi 489203914 483 RFELPPL 489
Cdd:pfam14532 132 RLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
337-480 |
1.85e-13 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 68.17 E-value: 1.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 337 RNLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFT----GAAAKGMRGLLQQADGG 412
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAsgsgELRLRLALALARKLKPD 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489203914 413 TLFLDEIGDMPLGLQTRLLRVLAEGEvapLGAARRQAVDIQVICATHR--DLAALVAAGGFREDLYFRLG 480
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLEELR---LLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLLLI 147
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
579-614 |
8.17e-06 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 42.77 E-value: 8.17e-06
10 20 30
....*....|....*....|....*....|....*.
gi 489203914 579 ERDALLDALVRHRWKPMAAARELGISRATLYRRVRR 614
Cdd:pfam02954 5 EKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| RWP-RK |
pfam02042 |
RWP-RK domain; This domain is named RWP-RK after a conserved motif at the C terminus of the ... |
584-618 |
7.72e-03 |
|
RWP-RK domain; This domain is named RWP-RK after a conserved motif at the C terminus of the presumed domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development.
Pssm-ID: 460427 Cd Length: 49 Bit Score: 34.79 E-value: 7.72e-03
10 20 30
....*....|....*....|....*....|....*.
gi 489203914 584 LDALVRHRWKPMA-AARELGISRATLYRRVRRHGIR 618
Cdd:pfam02042 4 LEDLSQYFHLPIKeAAKELGVSLTTLKRICRRLGIP 39
|
|
| |
