|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11556 |
PRK11556 |
MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit; |
11-419 |
1.27e-137 |
|
MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit;
Pssm-ID: 183194 [Multi-domain] Cd Length: 415 Bit Score: 400.32 E-value: 1.27e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 11 RTLRPWLITALAFAAVIGLVMW---LAAPASAPSSDGRPGRGGKPGAALPKANALT-VGVARVEQGDLALHFNALGTVTA 86
Cdd:PRK11556 5 RKSRWVIVIVVVIAAIAAFWFWqgrSTSSSAAPGAAKQAQQSPAGGRRGMRSGPLApVQAATATEQAVPRYLTGLGTVTA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 87 FNTVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEGTLMQNQAQLKNAEIDLQRYKGLYAEDSIAKQT 166
Cdd:PRK11556 85 ANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 167 LDTQEAQVRQLQGTIRTNQGQVDDARLNLTFTEVRAPISGRLGLRQVDIGNLVTSGDTTPLVVITQVKPISVVFSLPQQQ 246
Cdd:PRK11556 165 LDAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFTLPESD 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 247 IGTVVE-QMNGPgKLTVTALDRNQDKVLAEGTLTTLDNQIDTTTGTVKLKARFENADGKLFPNQFVNVRLLAQTLKGVLT 325
Cdd:PRK11556 245 IATVVQaQKAGK-PLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKLKARFNNQDDALFPNQFVNARMLVDTLQNAVV 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 326 IPANAVQRGTNGIYVYVVGADNKVSQRSVAIGTSENERVVVESGLKAGEQVVVEGTDRLRDGMEVRVAEasPQVLEGEPQ 405
Cdd:PRK11556 324 IPTAALQMGNEGHFVWVLNDENKVSKHLVTPGIQDSQKVVISAGLSAGDRVVTDGIDRLTEGAKVEVVE--PQSATTPEE 401
|
410
....*....|....
gi 489204244 406 KPQTgRPSGLQGDS 419
Cdd:PRK11556 402 KATS-REYAKKGAR 414
|
|
| AcrA |
COG0845 |
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope ... |
68-398 |
3.44e-106 |
|
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms];
Pssm-ID: 440606 [Multi-domain] Cd Length: 324 Bit Score: 316.89 E-value: 3.44e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 68 RVEQGDLALHFNALGTVTAFNTVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEGTLMQNQAQLKNAE 147
Cdd:COG0845 2 KVERGDVPETVEATGTVEARREVEVRARVSGRVEEVLVDEGDRVKKGQVLARLDPPDLQAALAQAQAQLAAAQAQLELAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 148 IDLQRYKGLYAEDSIAKQTLDTQEAQVRQLQGTIRTNQGQVDDARLNLTFTEVRAPISGRLGLRQVDIGNLVTSGdtTPL 227
Cdd:COG0845 82 AELERYKALLKKGAVSQQELDQAKAALDQAQAALAAAQAALEQARANLAYTTIRAPFDGVVGERNVEPGQLVSAG--TPL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 228 VVITQVKPISVVFSLPQQQIGTVVEQMngpgklTVTALDRNQDKVLAEGTLTTLDNQIDTTTGTVKLKARFENADGKLFP 307
Cdd:COG0845 160 FTIADLDPLEVEFDVPESDLARLKVGQ------PVTVTLDAGPGKTFEGKVTFIDPAVDPATRTVRVRAELPNPDGLLRP 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 308 NQFVNVRLLAQTLKGVLTIPANAVQRGTNGIYVYVVGADNKVSQRSVAIGTSENERVVVESGLKAGEQVVVEGTDRLRDG 387
Cdd:COG0845 234 GMFVRVRIVLGERENALLVPASAVVRDGGGAYVFVVDADGKVERRPVTLGRRDGDQVEVLSGLKAGDRVVVSGLQRLRDG 313
|
330
....*....|.
gi 489204244 388 MEVRVAEASPQ 398
Cdd:COG0845 314 AKVRVVEAAAP 324
|
|
| RND_mfp |
TIGR01730 |
RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion ... |
64-392 |
2.64e-79 |
|
RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273776 [Multi-domain] Cd Length: 322 Bit Score: 248.00 E-value: 2.64e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 64 VGVARVEQGDLALHFNALGTVTAFNTVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEGTLMQNQAQL 143
Cdd:TIGR01730 1 VTVATVESETLANTLTFPGSLEAVDEADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 144 KNAEIDLQRYKGLYAEDSIAKQTLDTQEAQVRQLQGTIRTNQGQVDDARLNLTFTEVRAPISGRLGLRQVDIGNLVTSGd 223
Cdd:TIGR01730 81 ELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAG- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 224 tTPLVVITQVKPISVVFSLPQQQIGTVVEQMngpgklTVTALDRNQDKVLAEGTLTTLDNQIDTTTGTVKLKARFENADG 303
Cdd:TIGR01730 160 -QTLATIVDLDPLEADFSVPERDLPQLRRGQ------TLTVELDALPGEEFKGKLRFIDPRVDSGTGTVRVRATFPNPDG 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 304 KLFPNQFVNVRLLAQTLKGVLTIPANAVQRGTNGIYVYVVGADNKVSQRSVAIGTSENERVVVESGLKAGEQVVVEGTDR 383
Cdd:TIGR01730 233 RLLPGMFGRVTISLKVRSSAIVVPTQAVIEDLNGKYVYVVKNDGKVSKRPVEVGLRNGGYVEIESGLKAGDQIVTAGVVK 312
|
....*....
gi 489204244 384 LRDGMEVRV 392
Cdd:TIGR01730 313 LRDGAKVKV 321
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
72-378 |
7.70e-39 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 142.18 E-value: 7.70e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 72 GDLALHFNALGTVTAF-NTVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEGTLMQNQAQLKNAEIDL 150
Cdd:pfam00529 2 APLTKGVEAPGRVVVSgNAKAVQPQVSGIVTRVLVKEGDRVKAGDVLFQLDPTDYQAALDSAEAQLAKAQAQVARLQAEL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 151 QRYKGLYAEDSIAKQTLDTQEAQVRQLQGTIRTNQGQVDDARLNLTFTEVRAPISGRLGLRQVDIGNLVTSGDTTPLVVI 230
Cdd:pfam00529 82 DRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARRRVLAPIGGISRESLVTAGALVAQAQANLLATV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 231 TQVKPISVVFSLPQQQIGTVVEQMNGPGKLTVTALDRNQDKVLAE-----------GTLTTLDNQIDTTTGTVKLKARFE 299
Cdd:pfam00529 162 AQLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEAELKLAKLDlerteirapvdGTVAFLSVTVDGGTVSAGLRLMFV 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 300 N-ADGKLFPNQFVNVRLLAQTLKGVLTIPANAVQRGTNG-IYVYVVGADNKVSQRSVAIGTSENERVVVESGLKAGEQVV 377
Cdd:pfam00529 242 VpEDNLLVPGMFVETQLDQVRVGQPVLIPFDAFPQTKTGrFTGVVVGISPDTGPVRVVVDKAQGPYYPLRIGLSAGALVR 321
|
.
gi 489204244 378 V 378
Cdd:pfam00529 322 L 322
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11556 |
PRK11556 |
MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit; |
11-419 |
1.27e-137 |
|
MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit;
Pssm-ID: 183194 [Multi-domain] Cd Length: 415 Bit Score: 400.32 E-value: 1.27e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 11 RTLRPWLITALAFAAVIGLVMW---LAAPASAPSSDGRPGRGGKPGAALPKANALT-VGVARVEQGDLALHFNALGTVTA 86
Cdd:PRK11556 5 RKSRWVIVIVVVIAAIAAFWFWqgrSTSSSAAPGAAKQAQQSPAGGRRGMRSGPLApVQAATATEQAVPRYLTGLGTVTA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 87 FNTVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEGTLMQNQAQLKNAEIDLQRYKGLYAEDSIAKQT 166
Cdd:PRK11556 85 ANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 167 LDTQEAQVRQLQGTIRTNQGQVDDARLNLTFTEVRAPISGRLGLRQVDIGNLVTSGDTTPLVVITQVKPISVVFSLPQQQ 246
Cdd:PRK11556 165 LDAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFTLPESD 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 247 IGTVVE-QMNGPgKLTVTALDRNQDKVLAEGTLTTLDNQIDTTTGTVKLKARFENADGKLFPNQFVNVRLLAQTLKGVLT 325
Cdd:PRK11556 245 IATVVQaQKAGK-PLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKLKARFNNQDDALFPNQFVNARMLVDTLQNAVV 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 326 IPANAVQRGTNGIYVYVVGADNKVSQRSVAIGTSENERVVVESGLKAGEQVVVEGTDRLRDGMEVRVAEasPQVLEGEPQ 405
Cdd:PRK11556 324 IPTAALQMGNEGHFVWVLNDENKVSKHLVTPGIQDSQKVVISAGLSAGDRVVTDGIDRLTEGAKVEVVE--PQSATTPEE 401
|
410
....*....|....
gi 489204244 406 KPQTgRPSGLQGDS 419
Cdd:PRK11556 402 KATS-REYAKKGAR 414
|
|
| AcrA |
COG0845 |
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope ... |
68-398 |
3.44e-106 |
|
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms];
Pssm-ID: 440606 [Multi-domain] Cd Length: 324 Bit Score: 316.89 E-value: 3.44e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 68 RVEQGDLALHFNALGTVTAFNTVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEGTLMQNQAQLKNAE 147
Cdd:COG0845 2 KVERGDVPETVEATGTVEARREVEVRARVSGRVEEVLVDEGDRVKKGQVLARLDPPDLQAALAQAQAQLAAAQAQLELAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 148 IDLQRYKGLYAEDSIAKQTLDTQEAQVRQLQGTIRTNQGQVDDARLNLTFTEVRAPISGRLGLRQVDIGNLVTSGdtTPL 227
Cdd:COG0845 82 AELERYKALLKKGAVSQQELDQAKAALDQAQAALAAAQAALEQARANLAYTTIRAPFDGVVGERNVEPGQLVSAG--TPL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 228 VVITQVKPISVVFSLPQQQIGTVVEQMngpgklTVTALDRNQDKVLAEGTLTTLDNQIDTTTGTVKLKARFENADGKLFP 307
Cdd:COG0845 160 FTIADLDPLEVEFDVPESDLARLKVGQ------PVTVTLDAGPGKTFEGKVTFIDPAVDPATRTVRVRAELPNPDGLLRP 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 308 NQFVNVRLLAQTLKGVLTIPANAVQRGTNGIYVYVVGADNKVSQRSVAIGTSENERVVVESGLKAGEQVVVEGTDRLRDG 387
Cdd:COG0845 234 GMFVRVRIVLGERENALLVPASAVVRDGGGAYVFVVDADGKVERRPVTLGRRDGDQVEVLSGLKAGDRVVVSGLQRLRDG 313
|
330
....*....|.
gi 489204244 388 MEVRVAEASPQ 398
Cdd:COG0845 314 AKVRVVEAAAP 324
|
|
| RND_mfp |
TIGR01730 |
RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion ... |
64-392 |
2.64e-79 |
|
RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273776 [Multi-domain] Cd Length: 322 Bit Score: 248.00 E-value: 2.64e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 64 VGVARVEQGDLALHFNALGTVTAFNTVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEGTLMQNQAQL 143
Cdd:TIGR01730 1 VTVATVESETLANTLTFPGSLEAVDEADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 144 KNAEIDLQRYKGLYAEDSIAKQTLDTQEAQVRQLQGTIRTNQGQVDDARLNLTFTEVRAPISGRLGLRQVDIGNLVTSGd 223
Cdd:TIGR01730 81 ELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAG- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 224 tTPLVVITQVKPISVVFSLPQQQIGTVVEQMngpgklTVTALDRNQDKVLAEGTLTTLDNQIDTTTGTVKLKARFENADG 303
Cdd:TIGR01730 160 -QTLATIVDLDPLEADFSVPERDLPQLRRGQ------TLTVELDALPGEEFKGKLRFIDPRVDSGTGTVRVRATFPNPDG 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 304 KLFPNQFVNVRLLAQTLKGVLTIPANAVQRGTNGIYVYVVGADNKVSQRSVAIGTSENERVVVESGLKAGEQVVVEGTDR 383
Cdd:TIGR01730 233 RLLPGMFGRVTISLKVRSSAIVVPTQAVIEDLNGKYVYVVKNDGKVSKRPVEVGLRNGGYVEIESGLKAGDQIVTAGVVK 312
|
....*....
gi 489204244 384 LRDGMEVRV 392
Cdd:TIGR01730 313 LRDGAKVKV 321
|
|
| PRK15030 |
PRK15030 |
multidrug efflux RND transporter periplasmic adaptor subunit AcrA; |
64-396 |
4.95e-53 |
|
multidrug efflux RND transporter periplasmic adaptor subunit AcrA;
Pssm-ID: 184990 [Multi-domain] Cd Length: 397 Bit Score: 182.22 E-value: 4.95e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 64 VGVARVEQGDLALHFNALGTVTAFNTVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEGTLMQNQAQL 143
Cdd:PRK15030 40 VGVVTVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 144 KNAEIDLQRYKGLYAEDSIAKQTLDTQEAQVRQLQGTIRTNQGQVDDARLNLTFTEVRAPISGRLGLRQVDIGNLVTSGD 223
Cdd:PRK15030 120 NIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQ 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 224 TTPLVVITQVKPISV--------VFSLPQQQIGTVVEQMNGPGKLTVTALDrnQDKVLAEGTLTTLDNQIDTTTGTVKLK 295
Cdd:PRK15030 200 ATALATVQQLDPIYVdvtqssndFLRLKQELANGTLKQENGKAKVSLITSD--GIKFPQDGTLEFSDVTVDQTTGSITLR 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 296 ARFENADGKLFPNQFVNVRLLAQTLKGVLTIPANAVQRGTNG-IYVYVVGADNKVSQRSVAIGTSENERVVVESGLKAGE 374
Cdd:PRK15030 278 AIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTRTPRGdATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGD 357
|
330 340
....*....|....*....|..
gi 489204244 375 QVVVEGTDRLRDGMEVRVAEAS 396
Cdd:PRK15030 358 RVVISGLQKVRPGVQVKAQEVT 379
|
|
| PRK09859 |
PRK09859 |
multidrug transporter subunit MdtE; |
54-406 |
2.64e-43 |
|
multidrug transporter subunit MdtE;
Pssm-ID: 137559 [Multi-domain] Cd Length: 385 Bit Score: 156.03 E-value: 2.64e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 54 AALPKanaltVGVARVEQGDLALHFNALGTVTAFNTVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAE 133
Cdd:PRK09859 31 AMTPE-----VGVVTLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 134 GTLMQNQAQLKNAEIDLQRYKGLYAEDSIAKQTLDTQEAQVRQLQGTIRTNQGQVDDARLNLTFTEVRAPISGRLGLRQV 213
Cdd:PRK09859 106 GSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSV 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 214 DIGNLVTSGDTTPLVVITQVKPISVVFSLPQQQIGTVVEQMnGPGKL------TVTALDRNQDKVLAE-GTLTTLDNQID 286
Cdd:PRK09859 186 TVGALVTANQADSLVTVQRLDPIYVDLTQSVQDFLRMKEEV-ASGQIkqvqgsTPVQLNLENGKRYSQtGTLKFSDPTVD 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 287 TTTGTVKLKARFENADGKLFPNQFVNVRLLAQTLKGVLTIPANAVQRGTNG-IYVYVVGADNKVSQRSVAIGTSENERVV 365
Cdd:PRK09859 265 ETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGkATALILDKDDVVQLREIEASKAIGDQWV 344
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 489204244 366 VESGLKAGEQVVVEGTDRLRDGMEVRVAEASPQVLEGEPQK 406
Cdd:PRK09859 345 VTSGLQAGDRVIVSGLQRIRPGIKARAISSSQENASTESKQ 385
|
|
| PRK09578 |
PRK09578 |
MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit; |
82-398 |
8.62e-40 |
|
MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit;
Pssm-ID: 169982 [Multi-domain] Cd Length: 385 Bit Score: 146.48 E-value: 8.62e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 82 GTVTAFNTVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEGTLMQNQAQLKNAEIDLQRYKGLYAEDS 161
Cdd:PRK09578 56 GRLDAYRQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRA 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 162 IAKQTLDTQEAQVRQLQGTIRTNQGQVDDARLNLTFTEVRAPISGRLGLRQVDIGNLVTSGDTTPLVVITQVKPISVVFS 241
Cdd:PRK09578 136 VSERDYTEAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQLDPIYVNFS 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 242 LPQQQIGTVVE-----QMNG--PGKLTVTALDRNQDKVLAEGTLTTLDNQIDTTTGTVKLKARFENADGKLFPNQFVNVR 314
Cdd:PRK09578 216 QPAADVEALRRavksgRATGiaQQDVAVTLVRADGSEYPLKGKLLFSDLAVDPTTDTVAMRALFPNPERELLPGAYVRIA 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 315 LLAQTLKGVLTIPANAVQRGTNGIYVYVVGADNKVSQRSVAIGTSENERVVVESGLKAGEQVVVEGTDRLRDGMEVRVAE 394
Cdd:PRK09578 296 LDRAVNPRAILVPRDALLRTADSASVKVVGQNGKVRDVEVEADQMSGRDWIVTRGLAGGERVIVDNAAQFAPGTAVKAVE 375
|
....
gi 489204244 395 ASPQ 398
Cdd:PRK09578 376 RAPA 379
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
72-378 |
7.70e-39 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 142.18 E-value: 7.70e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 72 GDLALHFNALGTVTAF-NTVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEGTLMQNQAQLKNAEIDL 150
Cdd:pfam00529 2 APLTKGVEAPGRVVVSgNAKAVQPQVSGIVTRVLVKEGDRVKAGDVLFQLDPTDYQAALDSAEAQLAKAQAQVARLQAEL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 151 QRYKGLYAEDSIAKQTLDTQEAQVRQLQGTIRTNQGQVDDARLNLTFTEVRAPISGRLGLRQVDIGNLVTSGDTTPLVVI 230
Cdd:pfam00529 82 DRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARRRVLAPIGGISRESLVTAGALVAQAQANLLATV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 231 TQVKPISVVFSLPQQQIGTVVEQMNGPGKLTVTALDRNQDKVLAE-----------GTLTTLDNQIDTTTGTVKLKARFE 299
Cdd:pfam00529 162 AQLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEAELKLAKLDlerteirapvdGTVAFLSVTVDGGTVSAGLRLMFV 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 300 N-ADGKLFPNQFVNVRLLAQTLKGVLTIPANAVQRGTNG-IYVYVVGADNKVSQRSVAIGTSENERVVVESGLKAGEQVV 377
Cdd:pfam00529 242 VpEDNLLVPGMFVETQLDQVRVGQPVLIPFDAFPQTKTGrFTGVVVGISPDTGPVRVVVDKAQGPYYPLRIGLSAGALVR 321
|
.
gi 489204244 378 V 378
Cdd:pfam00529 322 L 322
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
80-318 |
3.79e-29 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 116.30 E-value: 3.79e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 80 ALGTVTAfNTVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEG------------------------- 134
Cdd:COG1566 37 ADGRVEA-RVVTVAAKVSGRVTEVLVKEGDRVKKGQVLARLDPTDLQAALAQAEAqlaaaeaqlarleaelgaeaeiaaa 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 135 --TLMQNQAQLKNAEIDLQRYKGLYAEDSIAKQTLD---------------------------TQEAQVRQLQGTIRTNQ 185
Cdd:COG1566 116 eaQLAAAQAQLDLAQRELERYQALYKKGAVSQQELDearaaldaaqaqleaaqaqlaqaqaglREEEELAAAQAQVAQAE 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 186 GQVDDARLNLTFTEVRAPISGRLGLRQVDIGNLVTSGdtTPLVVITQVKPISVVFSLPQQQIGTVVEQMngPGKLTVTAL 265
Cdd:COG1566 196 AALAQAELNLARTTIRAPVDGVVTNLNVEPGEVVSAG--QPLLTIVPLDDLWVEAYVPETDLGRVKPGQ--PVEVRVDAY 271
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489204244 266 DrnqDKVLaEGTLTTLDNQIDTTTG----------TVKLKARFENADG-KLFPNQFVNVRLLAQ 318
Cdd:COG1566 272 P---DRVF-EGKVTSISPGAGFTSPpknatgnvvqRYPVRIRLDNPDPePLRPGMSATVEIDTE 331
|
|
| PRK11578 |
PRK11578 |
macrolide transporter subunit MacA; Provisional |
69-378 |
7.21e-24 |
|
macrolide transporter subunit MacA; Provisional
Pssm-ID: 183211 [Multi-domain] Cd Length: 370 Bit Score: 102.16 E-value: 7.21e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 69 VEQGDLALHFNALGTVTAFNTVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEGTLM-------QNQA 141
Cdd:PRK11578 41 VRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMelraqrqQAEA 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 142 QLKNAEIDLQRYKGLYAEDSIAKQTLDT-------QEAQVRQLQGTIRTNQGQVDDARLNLTFTEVRAPISGRLGL---- 210
Cdd:PRK11578 121 ELKLARVTLSRQQRLAKTQAVSQQDLDTaatelavKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQittl 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 211 -RQVDIG-----NLVTSGDTTPLVVITQVKPISVVFSLPQQQIGTVVeqMNGPGKLTvtaldrnqdkvlaEGTLTTLDNQ 284
Cdd:PRK11578 201 qGQTVIAaqqapNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTV--LGDPLTRY-------------EGVLKDILPT 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 285 IDTTTGTVKLKARFE--NADGKLFPNQFVNVRLLAQTLKGVLTIPANAV--QRGTNGIYVYVVgADNKVSQRSVAIGTSE 360
Cdd:PRK11578 266 PEKVNDAIFYYARFEvpNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALgdPVGDNRYKVKLL-RNGETREREVTIGARN 344
|
330
....*....|....*...
gi 489204244 361 NERVVVESGLKAGEQVVV 378
Cdd:PRK11578 345 DTDVEIVKGLEAGDEVII 362
|
|
| PRK10476 |
PRK10476 |
multidrug transporter subunit MdtN; |
88-242 |
1.28e-12 |
|
multidrug transporter subunit MdtN;
Pssm-ID: 182488 [Multi-domain] Cd Length: 346 Bit Score: 68.51 E-value: 1.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 88 NTVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEGTLMQNQAQLK-----------NAEI-------- 148
Cdd:PRK10476 47 DVVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPRPYELTVAQAQADLALADAQIMttqrsvdaersNAASaneqvera 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 149 ---------DLQRYKGLYAEDSIAKQTLD-----------------TQEAQVRQLQG-------TIRTNQGQVDDARLNL 195
Cdd:PRK10476 127 ranaklatrTLERLEPLLAKGYVSAQQVDqartaqrdaevslnqalLQAQAAAAAVGgvdalvaQRAAREAALAIAELHL 206
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 489204244 196 TFTEVRAPISGRL-GLRqvdignlVTSGDTtplvvitqVKPISVVFSL 242
Cdd:PRK10476 207 EDTTVRAPFDGRVvGLK-------VSVGEF--------AAPMQPIFTL 239
|
|
| PRK03598 |
PRK03598 |
putative efflux pump membrane fusion protein; Provisional |
89-224 |
2.83e-12 |
|
putative efflux pump membrane fusion protein; Provisional
Pssm-ID: 235136 [Multi-domain] Cd Length: 331 Bit Score: 67.29 E-value: 2.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 89 TVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEG--------------------------TLMQNQAQ 142
Cdd:PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAAPYENALMQAKAnvsvaqaqldlmlagyrdeeiaqaraAVKQAQAA 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 143 LKNAEIDLQRYKGLYAEDSIAKQTLD---TQEAQ-----------VRQLQGTIRTN------------QGQVDDARLNLT 196
Cdd:PRK03598 123 YDYAQNFYNRQQGLWKSRTISANDLEnarSSRDQaqatlksaqdkLSQYREGNRPQdiaqakaslaqaQAALAQAELNLQ 202
|
170 180
....*....|....*....|....*...
gi 489204244 197 FTEVRAPISGRLGLRQVDIGNLVTSGDT 224
Cdd:PRK03598 203 DTELIAPSDGTILTRAVEPGTMLNAGST 230
|
|
| HlyD_D23 |
pfam16576 |
Barrel-sandwich domain of CusB or HlyD membrane-fusion; HlyD_D23 is the combined domains 2 and ... |
73-311 |
6.51e-10 |
|
Barrel-sandwich domain of CusB or HlyD membrane-fusion; HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.
Pssm-ID: 435440 [Multi-domain] Cd Length: 214 Bit Score: 58.67 E-value: 6.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 73 DLALHFNALGTVtAFN---TVNVKPRVNG--ELVKVLFqEGQEVKAGDLLAVVdprtYKAALAQAegtlmqnQAQLKNAe 147
Cdd:pfam16576 1 PLSRTIRAVGRV-AYDerrLAHVHARVEGwiEKLYVNA-TGDPVKKGQPLAEL----YSPELVAA-------QQEYLLA- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 148 idLQRYKGLYAEDSIAK-----QTLDTQEAQVRQLqgtirTNQGQVDDarlnlTFTeVRAPISGRLGLRQVDIGNLVTSG 222
Cdd:pfam16576 67 --LRSGDALSKSELLRAarqrlRLLGMPEAQIAEL-----ERTGKVQP-----TVT-VYAPISGVVTELNVREGMYVQPG 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 223 DTtpLVVITQVKPISVVFSLPQQQIGTVveQMNGPGKLTVTALDrnqDKVLaEGTLTTLDNQIDTTTGTVKLKARFENAD 302
Cdd:pfam16576 134 DT--LFTIADLSTVWVEADVPEQDLALV--KVGQPAEVTLPALP---GKTF-EGKVDYIYPTLDPKTRTVRVRIELPNPD 205
|
....*....
gi 489204244 303 GKLFPNQFV 311
Cdd:pfam16576 206 GRLKPGMFA 214
|
|
| Biotin_lipoyl_2 |
pfam13533 |
Biotin-lipoyl like; |
88-136 |
9.21e-10 |
|
Biotin-lipoyl like;
Pssm-ID: 433286 Cd Length: 50 Bit Score: 53.99 E-value: 9.21e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 489204244 88 NTVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEGTL 136
Cdd:pfam13533 1 PVVKIASPVSGKVVAVNVKEGQQVKKGDVLATLDSPELQLQLQQAEAQL 49
|
|
| PRK10559 |
PRK10559 |
p-hydroxybenzoic acid efflux pump subunit AaeA; |
90-224 |
1.97e-07 |
|
p-hydroxybenzoic acid efflux pump subunit AaeA;
Pssm-ID: 182548 [Multi-domain] Cd Length: 310 Bit Score: 52.44 E-value: 1.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 90 VNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEGTLMQNQAQLKNAEIDLQRYKGL----YAEDSI--A 163
Cdd:PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLgvqaMSREEIdqA 127
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489204244 164 KQTLDTQEAQVRQLQGTIrtnqgqvDDARLNLTFTEVRAPISGRLGLRQVDIGNLVTSGDT 224
Cdd:PRK10559 128 NNVLQTVLHQLAKAQATR-------DLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGST 181
|
|
| PRK15136 |
PRK15136 |
multidrug efflux MFS transporter periplasmic adaptor subunit EmrA; |
88-230 |
3.13e-07 |
|
multidrug efflux MFS transporter periplasmic adaptor subunit EmrA;
Pssm-ID: 185090 [Multi-domain] Cd Length: 390 Bit Score: 52.00 E-value: 3.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 88 NTVNVKPRVNGELVKVLFQEGQEVKAGDLLAVVDPRTYKAALAQAEGTL----------MQNQAQLK-----------NA 146
Cdd:PRK15136 60 NQVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDAEQAFEKAKTALansvrqthqlMINSKQYQanielqktalaQA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 147 EIDLQRYKGLYAEDSI--------------AKQTLDTQEAQVRQLQGTIRT----NQ-------GQVDDARLNLTFTEVR 201
Cdd:PRK15136 140 QSDLNRRVPLGNANLIgreelqhardavasAQAQLDVAIQQYNANQAMILNtpleDQpavqqaaTEVRNAWLALQRTKIV 219
|
170 180
....*....|....*....|....*....
gi 489204244 202 APISGRLGLRQVDIGNLVTSGdtTPLVVI 230
Cdd:PRK15136 220 SPMTGYVSRRSVQVGAQISPT--TPLMAV 246
|
|
| PRK09783 |
PRK09783 |
copper/silver efflux system membrane fusion protein CusB; Provisional |
171-380 |
1.68e-04 |
|
copper/silver efflux system membrane fusion protein CusB; Provisional
Pssm-ID: 236625 [Multi-domain] Cd Length: 409 Bit Score: 43.70 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 171 EAQVRQLQGTirtnqgqvddARLNLTFTeVRAPISGRLGLRQVDIGnLVTSGDTTpLVVITQVKPISVVFSLPQqqigTV 250
Cdd:PRK09783 194 EADIRRLIAT----------RKIQTRFT-LKAPIDGVITAFDLRAG-MNIAKDNV-VAKIQGMDPVWVTAAIPE----SI 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 251 VEQMNGPGKLTVTALDRnQDKVLAEGTLTTLDNqIDTTTGTVKLKARFENADGKLFPNQFVNVRLLAQTlKGVLTIPANA 330
Cdd:PRK09783 257 AWLVKDASQFTLTVPAR-PDKTFTIRKWTLLPS-VDAATRTLQLRLEVDNADEALKPGMNAWLQLNTAS-EPMLLIPSQA 333
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 489204244 331 VQRGTNGIYVYVVGADNKVSQRSVAIGTSENERVVVESGLKAGEQVVVEG 380
Cdd:PRK09783 334 LIDTGSEQRVITVDADGRFVPKRVAVFQESQGVTAIRSGLAEGEKVVSSG 383
|
|
| HlyD_3 |
pfam13437 |
HlyD family secretion protein; This is a family of largely bacterial haemolysin translocator ... |
199-305 |
2.41e-04 |
|
HlyD family secretion protein; This is a family of largely bacterial haemolysin translocator HlyD proteins.
Pssm-ID: 433206 [Multi-domain] Cd Length: 104 Bit Score: 40.04 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489204244 199 EVRAPISGRLGLRQVDIGNLVTSGDttPLVVITQVKPISVVFSLPQQQIGTVveqmnGPGKLTVTALDRNQDKVLaEGTL 278
Cdd:pfam13437 1 TIRAPVDGVVAELNVEEGQVVQAGD--PLATIVPPDRLLVEAFVPAADLGSL-----KKGQKVTLKLDPGSDYTL-EGKV 72
|
90 100
....*....|....*....|....*..
gi 489204244 279 TTLDNQIDTTTGTVKLKARFENADGKL 305
Cdd:pfam13437 73 VRISPTVDPDTGVIPVRVSIENPKTPI 99
|
|
| |
