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Conserved domains on  [gi|489205948|ref|WP_003114982|]
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MULTISPECIES: type 4b pilus Flp biogenesis protein TadD [Pseudomonas]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11459274)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 55-209 2.27e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.28  E-value: 2.27e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948  55 AALANLESMPPGLLDVREERALILRRIGDP-RARAEYQALLET-CKAPEAHHGLGLLALRNGDSARAVLELREAARLRPT 132
Cdd:COG2956   63 RIHQKLLERDPDRAEALLELAQDYLKAGLLdRAEELLEKLLELdPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE 142

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489205948 133 ESRFRNDLGVALLKRGDRVGARFEFITALELQQgGKLPATNLLGLLYL-QGDREDAQRLIER-LQLDARDIRAAEARAR 209
Cdd:COG2956  143 NAHAYCELAELYLEQGDYDEAIEALEKALKLDP-DCARALLLLAELYLeQGDYEEAIAALERaLEQDPDYLPALPRLAE 220
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 55-209 2.27e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.28  E-value: 2.27e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948  55 AALANLESMPPGLLDVREERALILRRIGDP-RARAEYQALLET-CKAPEAHHGLGLLALRNGDSARAVLELREAARLRPT 132
Cdd:COG2956   63 RIHQKLLERDPDRAEALLELAQDYLKAGLLdRAEELLEKLLELdPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE 142

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489205948 133 ESRFRNDLGVALLKRGDRVGARFEFITALELQQgGKLPATNLLGLLYL-QGDREDAQRLIER-LQLDARDIRAAEARAR 209
Cdd:COG2956  143 NAHAYCELAELYLEQGDYDEAIEALEKALKLDP-DCARALLLLAELYLeQGDYEEAIAALERaLEQDPDYLPALPRLAE 220
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 100-209 2.66e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.99  E-value: 2.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948  100 PEAHHGLGLLALRNGDSARAVLELREAARLRPTESRFRNDLGVALLKRGDRVGARFEFITALELQQGGKLPATNLLGLLY 179
Cdd:TIGR02917 431 GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI 510

                          90       100       110
                  ....*....|....*....|....*....|.
gi 489205948  180 LQGDREDAQRLIER-LQLDARDIRAAEARAR 209
Cdd:TIGR02917 511 QEGNPDDAIQRFEKvLTIDPKNLRAILALAG 541
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 107-208 3.19e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 38.53  E-value: 3.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948  107 GLLALRNGDSARAVLELREAARLRPTESRFRNDLGVALLKRGDRVGARFEFITALELQQGG-------KLPATNLLGLLY 179
Cdd:PRK11447  276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSsnrdkweSLLKVNRYWLLI 355

                          90       100       110
                  ....*....|....*....|....*....|..
gi 489205948  180 LQGDREDAQ---RLIERLQLDARDIRAAEARA 208
Cdd:PRK11447  356 QQGDAALKAnnlAQAERLYQQARQVDNTDSYA 387
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 55-209 2.27e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 56.28  E-value: 2.27e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948  55 AALANLESMPPGLLDVREERALILRRIGDP-RARAEYQALLET-CKAPEAHHGLGLLALRNGDSARAVLELREAARLRPT 132
Cdd:COG2956   63 RIHQKLLERDPDRAEALLELAQDYLKAGLLdRAEELLEKLLELdPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE 142

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489205948 133 ESRFRNDLGVALLKRGDRVGARFEFITALELQQgGKLPATNLLGLLYL-QGDREDAQRLIER-LQLDARDIRAAEARAR 209
Cdd:COG2956  143 NAHAYCELAELYLEQGDYDEAIEALEKALKLDP-DCARALLLLAELYLeQGDYEEAIAALERaLEQDPDYLPALPRLAE 220
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 45-200 5.31e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.15  E-value: 5.31e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948  45 RDMIREGRLHAALANLESMP---PGLLDVREERALILRRIGDP-RARAEYQALLEtcKAP---EAHHGLGLLALRNGDSA 117
Cdd:COG3914   86 LLLQALGRYEEALALYRRALalnPDNAEALFNLGNLLLALGRLeEALAALRRALA--LNPdfaEAYLNLGEALRRLGRLE 163

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948 118 RAVLELREAARLRPTESRFRNDLGVALLKRGDRVGARFEFITALELQQGGKLPATNLLGLLYLQGDREDAQRLIERLQLD 197
Cdd:COG3914  164 EAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAAL 243


                 ...
gi 489205948 198 ARD 200
Cdd:COG3914  244 ARG 246
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
49-234 1.54e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.86  E-value: 1.54e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948  49 REGRLHAALANLE---SMPPGLLDVREERALILRRIGDP-RARAEYQALLETC-KAPEAHHGLGLLALRNGDSARAVLEL 123
Cdd:COG0457   20 RLGRYEEAIEDYEkalELDPDDAEALYNLGLAYLRLGRYeEALADYEQALELDpDDAEALNNLGLALQALGRYEEALEDY 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948 124 REAARLRPTESRFRNDLGVALLKRGDRVGARFEFITALELQQGGKLPATNLLGLLYLQGDREDAQRLIERLQLDARDIRA 203
Cdd:COG0457  100 DKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL 179

                        170       180       190
                 ....*....|....*....|....*....|.
gi 489205948 204 AEARARSWGAVPTPGAAPASDDPLAELPAEA 234
Cdd:COG0457  180 AAALGEAALALAAAEVLLALLLALEQALRKK 210
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 50-203 6.58e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.61  E-value: 6.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948  50 EGRLHAALANLESMPPGLLDVREERALILRRIGDPRARAEYQALLETCKAPEAHHGLGLLALRNGDSARAVLELREAARL 129
Cdd:COG3914   28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489205948 130 RPTESRFRNDLGVALLKRGDRVGARFEFITALELQQGGKLPATNLLGLLYLQGDREDAQRLIER-LQLDARDIRA 203
Cdd:COG3914  108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRaLELDPDNAEA 182
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 49-194 9.66e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 9.66e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948  49 REGRLHAALANLESMP---PGLLDVREERALILRRIGDP-RARAEYQALLETC-KAPEAHHGLGLLALRNGDSARAVLEL 123
Cdd:COG2956  122 QEGDWEKAIEVLERLLklgPENAHAYCELAELYLEQGDYdEAIEALEKALKLDpDCARALLLLAELYLEQGDYEEAIAAL 201

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489205948 124 REAARLRPTESRFRNDLGVALLKRGDRVGARFEFITALELQQgGKLPATNLLGLLYLQGDREDAQRLIERL 194
Cdd:COG2956  202 ERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP-SDDLLLALADLLERKEGLEAALALLERQ 271
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 68-194 2.00e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.95  E-value: 2.00e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948  68 LDVREERALILRRIGDP-RARAEYQALLETCKA-PEAHHGLGLLALRNGDSARAVLELREAARLRPTESRFRNDLGVALL 145
Cdd:COG4783    4 AEALYALAQALLLAGDYdEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 489205948 146 KRGDRVGARFEFITALELQQGGKLPATNLLGLLYLQGDREDAQRLIERL 194
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 52-193 1.30e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.18  E-value: 1.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948  52 RLHAALANLESMPPGLLDVREERALILRRIGDPRARAEYQALLETCKAPEAHHGLGLLALRNGDSARAVLELREAARLRP 131
Cdd:COG5010    6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489205948 132 TESRFRNDLGVALLKRGDRVGARFEFITALELQQGGKLPATNLLGLLYLQGDREDAQRLIER 193
Cdd:COG5010   86 NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
109-203 4.90e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.92  E-value: 4.90e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948 109 LALRNGDSARAVLELREAARLRPTESRFRNDLGVALLKRGDRVGARfEFITALELQQGGKLPATNLLGLLYLQGDREDAQ 188
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|....*
gi 489205948 189 RLIERLQLDARDIRA 203
Cdd:COG3063   80 AYLERALELDPSALR 94
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 100-209 5.94e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.53  E-value: 5.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948 100 PEAHHGLGLLALRNGDSARAVLELREAARLRPTESRFRNDLGVALLKRGDRVGARFEFITALELqQGGKLPATNLLGLLY 179
Cdd:COG4235   17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL-DPDNPEALYLLGLAA 95

                         90       100       110
                 ....*....|....*....|....*....|..
gi 489205948 180 LQ-GDREDAQRLIER-LQLDARDIRAAEARAR 209
Cdd:COG4235   96 FQqGDYAEAIAAWQKlLALLPADAPARLLEAS 127
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 73-194 7.94e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.79  E-value: 7.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948  73 ERALILRRIGDP-RARAEYQALLETC-KAPEAHHGLGLLALRNGDSARAVLELREAARLRPTESRFRNDLGVALLKRGDR 150
Cdd:COG2956   13 FKGLNYLLNGQPdKAIDLLEEALELDpETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 489205948 151 VGARFEFITALELQQGGKLPATNLLGLLYLQGDREDAQRLIERL 194
Cdd:COG2956   93 DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERL 136
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 100-209 2.66e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.99  E-value: 2.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948  100 PEAHHGLGLLALRNGDSARAVLELREAARLRPTESRFRNDLGVALLKRGDRVGARFEFITALELQQGGKLPATNLLGLLY 179
Cdd:TIGR02917 431 GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI 510

                          90       100       110
                  ....*....|....*....|....*....|.
gi 489205948  180 LQGDREDAQRLIER-LQLDARDIRAAEARAR 209
Cdd:TIGR02917 511 QEGNPDDAIQRFEKvLTIDPKNLRAILALAG 541
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
49-235 2.88e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.15  E-value: 2.88e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948  49 REGRLHAALANLE---SMPPGLLDVREERALILRRIGDP-RARAEYQALLETC-KAPEAHHGLGLLALRNGDSARAVLEL 123
Cdd:COG0457   54 RLGRYEEALADYEqalELDPDDAEALNNLGLALQALGRYeEALEDYDKALELDpDDAEALYNLGLALLELGRYDEAIEAY 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948 124 REAARLRPTESRFRNDLGVALLKRGDRVGARfEFITALELQQGGKLPATNLLGLLYLQGDREDAQRLIERLQLDARDIRA 203
Cdd:COG0457  134 ERALELDPDDADALYNLGIALEKLGRYEEAL-ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212

                        170       180       190
                 ....*....|....*....|....*....|..
gi 489205948 204 AEARARSWGAVPTPGAAPASDDPLAELPAEAN 235
Cdd:COG0457  213 ILTLAALAELLLLALALLLALRLAALALYQYR 244
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
100-211 5.10e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.38  E-value: 5.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948 100 PEAHHGLGLLALRNGDSARAVLELREAARLRPTESRFRNDLGVALLKRGDRVGARFEFITALELQQGGKLPATNLLGLLY 179
Cdd:COG0457    8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                         90       100       110
                 ....*....|....*....|....*....|...
gi 489205948 180 LQGDREDAQRLIER-LQLDARDIRAAEARARSW 211
Cdd:COG0457   88 ALGRYEEALEDYDKaLELDPDDAEALYNLGLAL 120
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
85-204 1.33e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 38.74  E-value: 1.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948  85 RARAEYQALLETCKAPEAHHGLGLLALRNGDSARAVLELREAARLRPTESRFRNDLGVALLKRGDRVGARFEFITALELQ 164
Cdd:COG4785   58 LAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD 137

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 489205948 165 QgGKLPATNLLGLLYLQ-GDREDAQRLIER-LQLDARDIRAA 204
Cdd:COG4785  138 P-DYAYAYLNRGIALYYlGRYELAIADLEKaLELDPNDPERA 178
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 91-164 2.42e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 37.63  E-value: 2.42e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489205948  91 QALLETCKAPEAHHGLGLLALRNGDSARAVLELREAARLRPTESRFRNDLGVALLKRGDRVGARFEFITALELQ 164
Cdd:COG5010   79 QALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 107-208 3.19e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 38.53  E-value: 3.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948  107 GLLALRNGDSARAVLELREAARLRPTESRFRNDLGVALLKRGDRVGARFEFITALELQQGG-------KLPATNLLGLLY 179
Cdd:PRK11447  276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSsnrdkweSLLKVNRYWLLI 355

                          90       100       110
                  ....*....|....*....|....*....|..
gi 489205948  180 LQGDREDAQ---RLIERLQLDARDIRAAEARA 208
Cdd:PRK11447  356 QQGDAALKAnnlAQAERLYQQARQVDNTDSYA 387
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 99-154 7.32e-03

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 37.59  E-value: 7.32e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 489205948  99 APEAHH--GLGLLALRNGDSARAVLELREAARLRPTESRFRNDLGVALLKRGDRVGAR 154
Cdd:PRK09782 606 APSANAyvARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSR 663
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 118-203 8.82e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 35.37  E-value: 8.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489205948 118 RAVLELREAARLRPTESRFRNDLGVALLKRGDRVGARFEFITALELQQGGKLPATNLLGLLYLQGDREDAQRLIER-LQL 196
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERaLAL 80


                 ....*..
gi 489205948 197 DARDIRA 203
Cdd:COG4235   81 DPDNPEA 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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