|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
1-831 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1518.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 1 MANFFRKLI-ENDKKELKRLDHIASQVESHADEMAALSDEQLREKTDEFRGRFQQGETLDQLLPEAFAVVREAAKRVLGL 79
Cdd:COG0653 1 MGKLLKKIFgSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 80 YPYHVQLMGGIVLHDGNIPEMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSK 159
Cdd:COG0653 81 RHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 160 TAEEKRAAYACDITYSTNNELGFDYLRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYNRVDN 239
Cdd:COG0653 161 DPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 240 FVKRLKEEEDYKIDIQSKTIGLTEKGIEKAEETFGLENLYDIENTALTHHMDQALRANYIMIRDIDYVVQEGKVLIVDQF 319
Cdd:COG0653 241 LVPRLKRDGDYTVDEKARTVTLTEEGIEKVEKLLGIDNLYDPENIELVHHLNQALRAHALFKRDVDYIVKDGEVVIVDEF 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 320 TGRIMDGRRYSDGLHQAIEAKENVEIEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFREIYNMQVIQIPTNRPIV 399
Cdd:COG0653 321 TGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVIPTNRPMI 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 400 RDDRADLLYPTLESKFHAVVQDIKERHRKGQPVLVGTVAVETSELLSSMLDREKVPHEVLNAKNHFKEAEIILNAGQKGA 479
Cdd:COG0653 401 RKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNAKQHEREAEIVAQAGRPGA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 480 VTIATNMAGRGTDIKLGL---------------------------------GVAELGGLAVIGTERHESRRIDNQLRGRS 526
Cdd:COG0653 481 VTIATNMAGRGTDIVLGGnpeflaaaeladrgleweeaiakikaewqaeheEVLEAGGLHVIGTERHESRRIDNQLRGRS 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 527 GRQGDPGVSQFYLSLEDDLMKRFGSERIKVFLDRMKIDEEDAvIQSKMLSKQVESAQKRVEGNNYDTRKNVLQYDDVMRE 606
Cdd:COG0653 561 GRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMEEGEP-IEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMND 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 607 QREVIYGQRQEvIMEEQDLSQTLMNMVKRSIERVVDSHT--QLEESNWNYEGIVDFAGNALVHEDSIS-VDDIKGKKPQE 683
Cdd:COG0653 640 QRKVIYEQRRE-ILEGEDLSETILDMREDVIEDLVDEYIpeGSYPEQWDLEGLEEALKELFGLDLPIEeWLDEEGLDEEE 718
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 684 IKDYLYQRAEEVFEQKKAQLNSqEQLLEFEKVVILRVVDTKWTDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYNMFED 763
Cdd:COG0653 719 LRERLLEAADEAYEEKEEELGP-EVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQKDPLVEYKREAFELFEE 797
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489219147 764 MVGAIEYEVTRLFMKAEIRQNVQREQVAQGEAQETETVPEEDP---------SFKNVGRNDPCPCGSGKKFKNCHGK 831
Cdd:COG0653 798 MLDSIKEEVVRYLFRVQVRSEEEREEVEEERRENHADPAGEEEeeapkqpvrKGPKVGRNDPCPCGSGKKYKHCHGK 874
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
1-832 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1473.78 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 1 MANFFRKLI-ENDKKELKRLDHIASQVESHADEMAALSDEQLREKTDEFRGRFQQGETLDQLLPEAFAVVREAAKRVLGL 79
Cdd:PRK12904 1 MLGLLKKIFgSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 80 YPYHVQLMGGIVLHDGNIPEMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSK 159
Cdd:PRK12904 81 RHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 160 TAEEKRAAYACDITYSTNNELGFDYLRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYNRVDN 239
Cdd:PRK12904 161 SPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 240 FVKRLKEEEDYKIDIQSKTIGLTEKGIEKAEETFGLENLYDIENTALTHHMDQALRANYIMIRDIDYVVQEGKVLIVDQF 319
Cdd:PRK12904 241 IVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEF 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 320 TGRIMDGRRYSDGLHQAIEAKENVEIEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFREIYNMQVIQIPTNRPIV 399
Cdd:PRK12904 321 TGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMI 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 400 RDDRADLLYPTLESKFHAVVQDIKERHRKGQPVLVGTVAVETSELLSSMLDREKVPHEVLNAKNHFKEAEIILNAGQKGA 479
Cdd:PRK12904 401 RIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAKNHEREAEIIAQAGRPGA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 480 VTIATNMAGRGTDIKLGL------------------------------GVAELGGLAVIGTERHESRRIDNQLRGRSGRQ 529
Cdd:PRK12904 481 VTIATNMAGRGTDIKLGGnpemlaaalleeeteeqiakikaewqeeheEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 530 GDPGVSQFYLSLEDDLMKRFGSERIKVFLDRMKIDEEDAvIQSKMLSKQVESAQKRVEGNNYDTRKNVLQYDDVMREQRE 609
Cdd:PRK12904 561 GDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEA-IEHKMVTRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQRK 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 610 VIYGQRQEvIMEEQDLSQTLMNMVKRSIERVVDSHT--QLEESNWNYEGIVDFAGNALVHEDSISVDDIKGKKPQEIKDY 687
Cdd:PRK12904 640 VIYAQRNE-ILEGEDLSETILDMREDVIEDLVDAYIppGSYEEDWDLEGLEEALKTDFGLELPIEEWLEEGLDEEELRER 718
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 688 LYQRAEEVFEQKKAQLnSQEQLLEFEKVVILRVVDTKWTDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYNMFEDMVGA 767
Cdd:PRK12904 719 ILEAAEEAYEEKEEEL-GEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPLQEYKREGFELFEEMLDS 797
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489219147 768 IEYEVTRLFMKAEIrqnvqreqvaqgeaqetetvpeedpsfknvgrnDPCPCGSGKKFKNCHGKK 832
Cdd:PRK12904 798 IKEEVVRTLMKVQI---------------------------------DPCPCGSGKKYKHCHGRL 829
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
26-768 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1189.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 26 VESHADEMAALSDEQLREKTDEFRGRFQ-QGETLDQLLPEAFAVVREAAKRVLGLYPYHVQLMGGIVLHDGNIPEMRTGE 104
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAkQGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 105 GKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSKTAEEKRAAYACDITYSTNNELGFDY 184
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 185 LRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYNRVDNFVKRLKEEEDYKIDIQSKTIGLTEK 264
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKFAKALEKEVDYEVDEKNRAVLLTEQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 265 GIEKAEETFGLENLYDIENTALTHHMDQALRANYIMIRDIDYVVQEGKVLIVDQFTGRIMDGRRYSDGLHQAIEAKENVE 344
Cdd:TIGR00963 241 GMKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 345 IEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFREIYNMQVIQIPTNRPIVRDDRADLLYPTLESKFHAVVQDIKE 424
Cdd:TIGR00963 321 IQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDLVYKTEEEKWKAVVEEIKE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 425 RHRKGQPVLVGTVAVETSELLSSMLDREKVPHEVLNAKNHFKEAEIILNAGQKGAVTIATNMAGRGTDIKLGlGVAELGG 504
Cdd:TIGR00963 401 RHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLE-EVKELGG 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 505 LAVIGTERHESRRIDNQLRGRSGRQGDPGVSQFYLSLEDDLMKRFGSERIKVFLDRMKIDeEDAVIQSKMLSKQVESAQK 584
Cdd:TIGR00963 480 LYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFGGDRLEGLMRRLGMD-DDEPIESKMVSRALESAQK 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 585 RVEGNNYDTRKNVLQYDDVMREQREVIYGQRQEVImEEQDLSQTLMNMVKRSIERVVDSHT--QLEESNWNYEGIVDFAG 662
Cdd:TIGR00963 559 RVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRVL-ESEDLSELILQMLESTLDRIVDAYIneEKLSEEWDLEGLIEKLK 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 663 NALVHEDSISVDDIKGKKPQEIKDYLYQRAEEVFEQKKAQLnSQEQLLEFEKVVILRVVDTKWTDHIDAMDQLRQSVGLR 742
Cdd:TIGR00963 638 TLFLLDGDLTPEDLENLTSEDLKELLLEKIRAAYDEKEEQL-ESERMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLR 716
|
730 740
....*....|....*....|....*.
gi 489219147 743 AYGQNNPLVEYQTEGYNMFEDMVGAI 768
Cdd:TIGR00963 717 SYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
5-382 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 743.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 5 FRKLIEND-KKELKRLDHIASQVESHADEMAALSDEQLREKTDEFRGRFQQGETLDQLLPEAFAVVREAAKRVLGLYPYH 83
Cdd:smart00957 1 LKKLFGSKnDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 84 VQLMGGIVLHDGNIPEMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSKTAEE 163
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 164 KRAAYACDITYSTNNELGFDYLRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEK-STALYNRVDNFVK 242
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDeSSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 243 RLKEEEDYKIDIQSKTIGLTEKGIEKAEETFGLENLYDIENTALTHHMDQALRANYIMIRDIDYVVQEGKVLIVDQFTGR 322
Cdd:smart00957 241 RLKEDEDYTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPENIELLHHVNQALRAHYLFKRDVDYIVRDGEVVIVDEFTGR 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 323 IMDGRRYSDGLHQAIEAKENVEIEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFR 382
Cdd:smart00957 321 VMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
4-382 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 684.61 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 4 FFRKLIENDKKELKRLDHIASQVESHADEMAALSDEQLREKTDEFRGRFQQGETLDQLLPEAFAVVREAAKRVLGLYPYH 83
Cdd:pfam07517 1 LKKIFGSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 84 VQLMGGIVLHDGNIPEMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSKTAEE 163
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 164 KRAAYACDITYSTNNELGFDYLRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYNRVDNFVKR 243
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 244 LKEEEDYKIDIQSKTIGLTEKGIEKAEETFGLENLYDIENTALTHHMDQALRANYIMIRDIDYVVQEGKVLIVDQFTGRI 323
Cdd:pfam07517 241 LEEDGDYEIDEKSKNVELTEKGIEKIEKLLGIDNLYDPENVELLHHINQALKAHHLFKRDVDYIVRDGEVVIVDEFTGRV 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 489219147 324 MDGRRYSDGLHQAIEAKENVEIEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFR 382
Cdd:pfam07517 321 MPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEFR 379
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
40-394 |
1.46e-134 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 399.22 E-value: 1.46e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 40 QLREKTDEFRGRFQQGETLDQLLPEAFAVVREAAKRVLGLYPYHVQLMGGIVLHDGNIPEMRTGEGKTLTATLPVYLNAL 119
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 120 SGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSKTAEEKRAAYACDITYSTNNELGFDYLRDNMVVYRHQMVQR 199
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 200 PLNYAIVDEVDSILIDEARTPLIISGqaekstalynrvdnfvkrlkeeedykidiqsktigltekgiekaeetfglenly 279
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 280 dientalthhmdqalranyimirdidyvvqegkvlivdqftgrimdgrrysdglhqaieakenveiedetkTMATITFQN 359
Cdd:cd17928 187 -----------------------------------------------------------------------TLATITFQN 195
|
330 340 350
....*....|....*....|....*....|....*
gi 489219147 360 YFRMYKKLSGMTGTAKTEEEEFREIYNMQVIQIPT 394
Cdd:cd17928 196 YFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
1-831 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1518.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 1 MANFFRKLI-ENDKKELKRLDHIASQVESHADEMAALSDEQLREKTDEFRGRFQQGETLDQLLPEAFAVVREAAKRVLGL 79
Cdd:COG0653 1 MGKLLKKIFgSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 80 YPYHVQLMGGIVLHDGNIPEMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSK 159
Cdd:COG0653 81 RHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 160 TAEEKRAAYACDITYSTNNELGFDYLRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYNRVDN 239
Cdd:COG0653 161 DPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 240 FVKRLKEEEDYKIDIQSKTIGLTEKGIEKAEETFGLENLYDIENTALTHHMDQALRANYIMIRDIDYVVQEGKVLIVDQF 319
Cdd:COG0653 241 LVPRLKRDGDYTVDEKARTVTLTEEGIEKVEKLLGIDNLYDPENIELVHHLNQALRAHALFKRDVDYIVKDGEVVIVDEF 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 320 TGRIMDGRRYSDGLHQAIEAKENVEIEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFREIYNMQVIQIPTNRPIV 399
Cdd:COG0653 321 TGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVIPTNRPMI 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 400 RDDRADLLYPTLESKFHAVVQDIKERHRKGQPVLVGTVAVETSELLSSMLDREKVPHEVLNAKNHFKEAEIILNAGQKGA 479
Cdd:COG0653 401 RKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNAKQHEREAEIVAQAGRPGA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 480 VTIATNMAGRGTDIKLGL---------------------------------GVAELGGLAVIGTERHESRRIDNQLRGRS 526
Cdd:COG0653 481 VTIATNMAGRGTDIVLGGnpeflaaaeladrgleweeaiakikaewqaeheEVLEAGGLHVIGTERHESRRIDNQLRGRS 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 527 GRQGDPGVSQFYLSLEDDLMKRFGSERIKVFLDRMKIDEEDAvIQSKMLSKQVESAQKRVEGNNYDTRKNVLQYDDVMRE 606
Cdd:COG0653 561 GRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMEEGEP-IEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMND 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 607 QREVIYGQRQEvIMEEQDLSQTLMNMVKRSIERVVDSHT--QLEESNWNYEGIVDFAGNALVHEDSIS-VDDIKGKKPQE 683
Cdd:COG0653 640 QRKVIYEQRRE-ILEGEDLSETILDMREDVIEDLVDEYIpeGSYPEQWDLEGLEEALKELFGLDLPIEeWLDEEGLDEEE 718
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 684 IKDYLYQRAEEVFEQKKAQLNSqEQLLEFEKVVILRVVDTKWTDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYNMFED 763
Cdd:COG0653 719 LRERLLEAADEAYEEKEEELGP-EVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQKDPLVEYKREAFELFEE 797
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489219147 764 MVGAIEYEVTRLFMKAEIRQNVQREQVAQGEAQETETVPEEDP---------SFKNVGRNDPCPCGSGKKFKNCHGK 831
Cdd:COG0653 798 MLDSIKEEVVRYLFRVQVRSEEEREEVEEERRENHADPAGEEEeeapkqpvrKGPKVGRNDPCPCGSGKKYKHCHGK 874
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
1-832 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1473.78 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 1 MANFFRKLI-ENDKKELKRLDHIASQVESHADEMAALSDEQLREKTDEFRGRFQQGETLDQLLPEAFAVVREAAKRVLGL 79
Cdd:PRK12904 1 MLGLLKKIFgSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 80 YPYHVQLMGGIVLHDGNIPEMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSK 159
Cdd:PRK12904 81 RHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 160 TAEEKRAAYACDITYSTNNELGFDYLRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYNRVDN 239
Cdd:PRK12904 161 SPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 240 FVKRLKEEEDYKIDIQSKTIGLTEKGIEKAEETFGLENLYDIENTALTHHMDQALRANYIMIRDIDYVVQEGKVLIVDQF 319
Cdd:PRK12904 241 IVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEF 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 320 TGRIMDGRRYSDGLHQAIEAKENVEIEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFREIYNMQVIQIPTNRPIV 399
Cdd:PRK12904 321 TGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMI 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 400 RDDRADLLYPTLESKFHAVVQDIKERHRKGQPVLVGTVAVETSELLSSMLDREKVPHEVLNAKNHFKEAEIILNAGQKGA 479
Cdd:PRK12904 401 RIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAKNHEREAEIIAQAGRPGA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 480 VTIATNMAGRGTDIKLGL------------------------------GVAELGGLAVIGTERHESRRIDNQLRGRSGRQ 529
Cdd:PRK12904 481 VTIATNMAGRGTDIKLGGnpemlaaalleeeteeqiakikaewqeeheEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 530 GDPGVSQFYLSLEDDLMKRFGSERIKVFLDRMKIDEEDAvIQSKMLSKQVESAQKRVEGNNYDTRKNVLQYDDVMREQRE 609
Cdd:PRK12904 561 GDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEA-IEHKMVTRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQRK 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 610 VIYGQRQEvIMEEQDLSQTLMNMVKRSIERVVDSHT--QLEESNWNYEGIVDFAGNALVHEDSISVDDIKGKKPQEIKDY 687
Cdd:PRK12904 640 VIYAQRNE-ILEGEDLSETILDMREDVIEDLVDAYIppGSYEEDWDLEGLEEALKTDFGLELPIEEWLEEGLDEEELRER 718
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 688 LYQRAEEVFEQKKAQLnSQEQLLEFEKVVILRVVDTKWTDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYNMFEDMVGA 767
Cdd:PRK12904 719 ILEAAEEAYEEKEEEL-GEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPLQEYKREGFELFEEMLDS 797
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489219147 768 IEYEVTRLFMKAEIrqnvqreqvaqgeaqetetvpeedpsfknvgrnDPCPCGSGKKFKNCHGKK 832
Cdd:PRK12904 798 IKEEVVRTLMKVQI---------------------------------DPCPCGSGKKYKHCHGRL 829
|
|
| secA |
PRK12906 |
preprotein translocase subunit SecA; Reviewed |
1-785 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237260 [Multi-domain] Cd Length: 796 Bit Score: 1413.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 1 MANFFRKLIENDKKELKRLDHIASQVESHADEMAALSDEQLREKTDEFRGRFQQGETLDQLLPEAFAVVREAAKRVLGLY 80
Cdd:PRK12906 1 MANILKKWFDNDKRELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEAFAVAREGAKRVLGLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 81 PYHVQLMGGIVLHDGNIPEMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSKT 160
Cdd:PRK12906 81 PFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 161 AEEKRAAYACDITYSTNNELGFDYLRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYNRVDNF 240
Cdd:PRK12906 161 PDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 241 VKRLKEEE-----------DYKIDIQSKTIGLTEKGIEKAEETFGLENLYDIENTALTHHMDQALRANYIMIRDIDYVVQ 309
Cdd:PRK12906 241 VKTLIKDEaedgdddedtgDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQ 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 310 EGKVLIVDQFTGRIMDGRRYSDGLHQAIEAKENVEIEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFREIYNMQV 389
Cdd:PRK12906 321 DGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 390 IQIPTNRPIVRDDRADLLYPTLESKFHAVVQDIKERHRKGQPVLVGTVAVETSELLSSMLDREKVPHEVLNAKNHFKEAE 469
Cdd:PRK12906 401 ITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 470 IILNAGQKGAVTIATNMAGRGTDIKLGLGVAELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGVSQFYLSLEDDLMKRF 549
Cdd:PRK12906 481 IIMNAGQRGAVTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRF 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 550 GSERIKVFLDRMKIDEEDAVIQSKMLSKQVESAQKRVEGNNYDTRKNVLQYDDVMREQREVIYGQRQEVIMEEQDLSQTL 629
Cdd:PRK12906 561 GSDRVKAFLDRLGMNDDDQVIESRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQVINEDKDLKEVL 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 630 MNMVKRSIERVVDSHTQLEESNWNYEGIVDFAGNALVHEDSISVDDIKGKKPQEIKDYLYQRAEEVFEQKKAQLNSQEQL 709
Cdd:PRK12906 641 MPMIKRTVDRQVQMYTQGDKKDWDLDALRDFIVSAMPDEETFDFEDLKGKSPEELKKRLLDIVEDNYAEKEKQLGDPTQM 720
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489219147 710 LEFEKVVILRVVDTKWTDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYNMFEDMVGAIEYEVTRLFMKAEIRQNV 785
Cdd:PRK12906 721 LEFEKVVILRVVDSHWTDHIDAMDQLRQSIGLRGYGQLNPLVEYQEEGYRMFEEMISNIDYDVTRLFMKAQIRQNI 796
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
26-768 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1189.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 26 VESHADEMAALSDEQLREKTDEFRGRFQ-QGETLDQLLPEAFAVVREAAKRVLGLYPYHVQLMGGIVLHDGNIPEMRTGE 104
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAkQGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 105 GKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSKTAEEKRAAYACDITYSTNNELGFDY 184
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 185 LRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYNRVDNFVKRLKEEEDYKIDIQSKTIGLTEK 264
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKFAKALEKEVDYEVDEKNRAVLLTEQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 265 GIEKAEETFGLENLYDIENTALTHHMDQALRANYIMIRDIDYVVQEGKVLIVDQFTGRIMDGRRYSDGLHQAIEAKENVE 344
Cdd:TIGR00963 241 GMKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 345 IEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFREIYNMQVIQIPTNRPIVRDDRADLLYPTLESKFHAVVQDIKE 424
Cdd:TIGR00963 321 IQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDLVYKTEEEKWKAVVEEIKE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 425 RHRKGQPVLVGTVAVETSELLSSMLDREKVPHEVLNAKNHFKEAEIILNAGQKGAVTIATNMAGRGTDIKLGlGVAELGG 504
Cdd:TIGR00963 401 RHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLE-EVKELGG 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 505 LAVIGTERHESRRIDNQLRGRSGRQGDPGVSQFYLSLEDDLMKRFGSERIKVFLDRMKIDeEDAVIQSKMLSKQVESAQK 584
Cdd:TIGR00963 480 LYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFGGDRLEGLMRRLGMD-DDEPIESKMVSRALESAQK 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 585 RVEGNNYDTRKNVLQYDDVMREQREVIYGQRQEVImEEQDLSQTLMNMVKRSIERVVDSHT--QLEESNWNYEGIVDFAG 662
Cdd:TIGR00963 559 RVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRVL-ESEDLSELILQMLESTLDRIVDAYIneEKLSEEWDLEGLIEKLK 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 663 NALVHEDSISVDDIKGKKPQEIKDYLYQRAEEVFEQKKAQLnSQEQLLEFEKVVILRVVDTKWTDHIDAMDQLRQSVGLR 742
Cdd:TIGR00963 638 TLFLLDGDLTPEDLENLTSEDLKELLLEKIRAAYDEKEEQL-ESERMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLR 716
|
730 740
....*....|....*....|....*.
gi 489219147 743 AYGQNNPLVEYQTEGYNMFEDMVGAI 768
Cdd:TIGR00963 717 SYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| PRK09200 |
PRK09200 |
preprotein translocase subunit SecA; Reviewed |
12-790 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 236408 [Multi-domain] Cd Length: 790 Bit Score: 1052.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 12 DKKELKRLDHIASQVESHADEMAALSDEQLREKTDEFRGRFQQGETLDQLLPEAFAVVREAAKRVLGLYPYHVQLMGGIV 91
Cdd:PRK09200 10 DKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMRPYDVQLIGALV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 92 LHDGNIPEMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINS-KTAEEKRAAYAC 170
Cdd:PRK09200 90 LHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDiDDASEKKAIYEA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 171 DITYSTNNELGFDYLRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYNRVDNFVKRLKEEEDY 250
Cdd:PRK09200 170 DIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDY 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 251 KIDIQSKTIGLTEKGIEKAEETFGLENLYDIENTALTHHMDQALRANYIMIRDIDYVVQEGKVLIVDQFTGRIMDGRRYS 330
Cdd:PRK09200 250 EFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQ 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 331 DGLHQAIEAKENVEIEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFREIYNMQVIQIPTNRPIVRDDRADLLYPT 410
Cdd:PRK09200 330 DGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVT 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 411 LESKFHAVVQDIKERHRKGQPVLVGTVAVETSELLSSMLDREKVPHEVLNAKNHFKEAEIILNAGQKGAVTIATNMAGRG 490
Cdd:PRK09200 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKGAVTVATNMAGRG 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 491 TDIKLGLGVAELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGVSQFYLSLEDDLMKRFGSERIKVFLDRMKIDE--EDA 568
Cdd:PRK09200 490 TDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEKLKKKLKTDAqrLTG 569
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 569 VIQSKMLSKQVESAQKRVEGNNYDTRKNVLQYDDVMREQREVIYGQRQEVI-MEEQDLSQTLMNMVKRSIERVVDSHTQL 647
Cdd:PRK09200 570 LLFNRKVHKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLeEDDRDLIDIVILMIDVYLEAVAEEYLLE 649
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 648 EES--NWNYEgIVDFAGNALvhedsisVDDIKGKKPQEIKDYLYQRAEEVFEQKKAQLNSQEQLLEFEKVVILRVVDTKW 725
Cdd:PRK09200 650 KSLleEWIYE-NLSFQLNEI-------LSNTNFPDKKEVVQFLLEEAEKQLKEKRNKLPSATLYNQFLRKVALKAIDQNW 721
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489219147 726 TDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYNMFEDMVGAIEYEVTRLFMKAEI-RQNVQREQV 790
Cdd:PRK09200 722 VEQVDALQQLKEGIGLRQYGQRNPIREYQKEALESFEYMYENIKKDMVRNLLLSLLvFDKEGEIVI 787
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
3-781 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 1028.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 3 NFFRKLIENDKKELKRLDHIASQVESHADEMAALSDEQLREKTDEFRGRFQQGETLDQLLPEAFAVVREAAKRVLGLYPY 82
Cdd:PRK12903 1 MKFLKLFFFKSTEMRIAEKILKQINDLEPYYRNLTDEELANKTNEFKDRLKNGETLEDIRVEAFAVAREATKRVLGKRPY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 83 HVQLMGGIVLHDGNIPEMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSKTAE 162
Cdd:PRK12903 81 DVQIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 163 EKRAAYACDITYSTNNELGFDYLRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYNRVDNFVK 242
Cdd:PRK12903 161 LKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 243 RLKEEeDYKIDIQSKTIGLTEKGIEKAEETFGLENLYDIENTALTHHMDQALRANYIMIRDIDYVVQEGKVLIVDQFTGR 322
Cdd:PRK12903 241 TLKED-DYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGR 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 323 IMDGRRYSDGLHQAIEAKENVEIEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFREIYNMQVIQIPTNRPIVRDD 402
Cdd:PRK12903 320 IMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKD 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 403 RADLLYPTLESKFHAVVQDIKERHRKGQPVLVGTVAVETSELLSSMLDREKVPHEVLNAKNHFKEAEIILNAGQKGAVTI 482
Cdd:PRK12903 400 EPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQKGAITI 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 483 ATNMAGRGTDIKLGLGVAELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGVSQFYLSLEDDLMKRF-GSERIKvflDRM 561
Cdd:PRK12903 480 ATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFsNFDKIK---EAF 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 562 KIDEEDAvIQSKMLSKQVESAQKRVEGNNYDTRKNVLQYDDVMREQREVIYGQRqEVIMEEQDLSQTLMNMVKRSIERVV 641
Cdd:PRK12903 557 KKLGDDE-IKSKFFSKALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQR-DLILIADDLSHVIEKMISRAVEQIL 634
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 642 DSHT-QLEESNWNYEGIVDFAGNALV---HEDsISVDDIKGKKPQEIKDYLYQRAEEVFEQKKAQL---NSQEQLLEFEK 714
Cdd:PRK12903 635 KNSFiILKNNTINYKELVEFLNDNLLritHFK-FSEKDFENYHKEELAQYLIEALNEIYFKKRQVIldkIALNTFFESER 713
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489219147 715 VVILRVVDTKWTDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYNMFEDMVGAIEYEVTRLFMKAEI 781
Cdd:PRK12903 714 YIILSALDKYWQNHIDTMDKLRSGVNLVQYSQKNPYQVYTEEGTKKFNILLQEIAYDVIVSLFNNPN 780
|
|
| SecA2_Bac_anthr |
TIGR04397 |
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in ... |
5-778 |
0e+00 |
|
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in genomes with the preprotein translocase SecA (TIGR00963) and closely resemble it, hence the designation SecA2. However, this appears to mark a different type of accessory Sec system SecA2 (TIGR03714) from the serine-rich glycoprotein type found in Staphylococcus and Streptococcus, and the actinobacterial SecA2 (TIGR04221). This type occurs in species including Bacillus anthracis, Geobacillus thermoglucosidasius, Solibacillus silvestris, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 275190 [Multi-domain] Cd Length: 774 Bit Score: 971.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 5 FRKLIEN-DKKELKRLDHIASQVESHADEMAALSDEQLREKTDEFRGRFQQGETLDQLLPEAFAVVREAAKRVLGLYPYH 83
Cdd:TIGR04397 1 VKKLKGDsSARELKRYEKLVAQINELEPKMEKLSDEELRQKTITFKERLEDGKTVDDIKVEAFAVVREASKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 84 VQLMGGIVLHDGNIPEMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSKTAEE 163
Cdd:TIGR04397 81 VQLIGGLVLLEGNIAEMPTGEGKTLVASLPSYLRALEGKGVHVITVNDYLARRDRELIGQIHEFLGLTVGLNVPMMEASE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 164 KRAAYACDITYSTNNELGFDYLRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYNRVDNFVKR 243
Cdd:TIGR04397 161 KKEAYQADITYGVGTEFGFDYLRDNMVYSLSDKVQRPYHFAIIDEIDSVLIDEAKTPLIIAGKTGSSSELHYICARIIKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 244 LKEEEDYKIDIQSKTIGLTEKGIEKAEETFGLENLYDIENTALTHHMDQALRANYIMIRDIDYVVQEGKVLIVDQFTGRI 323
Cdd:TIGR04397 241 FEETEDYEYDPETKAASLTEEGITKIERAFGIDNLYDLEHQTLYHYLIQALRAHVLFKRDVDYIVKDGKIELVDMFTGRI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 324 MDGRRYSDGLHQAIEAKENVEIEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFREIYNMQVIQIPTNRPIVRDDR 403
Cdd:TIGR04397 321 MEGRSLSDGLHQAIEAKEGLEITEENKTQASITIQNYFRMYPKLSGMTGTAKTEEKEFRETYGMDVVQIPTNRPRIRVDW 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 404 ADLLYPTLESKFHAVVQDIKERHRKGQPVLVGTVAVETSELLSSMLDREKVPHEVLNAKNHFKEAEIILNAGQKGAVTIA 483
Cdd:TIGR04397 401 PDRVFMTYEAKYKAVAKEVKKRHETGQPILIGTTSILQSETVAKYLDKEKIPYQLLNAKTVEQEADLIALAGQKGQVTIA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 484 TNMAGRGTDIKLGLGVAELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGVSQFYLSLEDDLMKRFGSERIKVFLDRMKI 563
Cdd:TIGR04397 481 TNMAGRGTDILLGEGVHELGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSQFIISLEDDMFRRYAAEELEKWKKKLKT 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 564 DeEDAVIQSKMLSKQVESAQKRVEGNNYDTRKNVLQYDDVMREQREVIYGQRQEvIMEEQDLSQTLMNMVKRSIERVVDS 643
Cdd:TIGR04397 561 D-ETGEILNKDVHEFVDKVQRIIEGSHYSAREYNLKLDDVINEQRNVIYQLRDK-LLEEEDAISEVLKMIRSAVEQIIDQ 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 644 HTQLEES--NWNYEGIVDFAGNALVHEDSISVDDIkgKKPQEIKDYLyQRAEEVFEQKKAQLNSQEQLLEFEKVVILRVV 721
Cdd:TIGR04397 639 YCPEEVLpeEWDLERLTEELNRIFPVTFVTFDKRI--ADKEELKDLV-KDTYEQYIAALEKLPENEEIQMRLKHVMLSVI 715
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*..
gi 489219147 722 DTKWTDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYNMFEDMVGAIEYEVTRLFMK 778
Cdd:TIGR04397 716 DAHWTRHLDAMNLLKEGIGLRSYQQEDPMRLYQKEGLELFEAMYQNIEREICTELAR 772
|
|
| secA |
PRK12901 |
preprotein translocase subunit SecA; Reviewed |
1-832 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237256 [Multi-domain] Cd Length: 1112 Bit Score: 897.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 1 MANFFRKLIEN-DKKELKRLDHIASQVESHADEMAALSDEQLREKTDEFRGRFQQG------------------------ 55
Cdd:PRK12901 1 MNEFLKKLFGDkSERDLKEIQPIVEKIKAEYPELEALSNDELRAKTDEFKQYIKEAvadidakieelkaeaiesldider 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 56 -------------------ETLDQLLPEAFAVVREAAKRVLG-------------------------------------- 78
Cdd:PRK12901 81 ediyaqidklekeayeileKVLDEILPEAFAIVKETARRFAEneeievtatdfdrelaatkdfvtiegdkaiwknhwdag 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 79 -------LYPYHVQLMGGIVLHDGNIPEMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLT 151
Cdd:PRK12901 161 gneitwdMVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 152 VG-LNINSKTAEEKRAAYACDITYSTNNELGFDYLRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKS 230
Cdd:PRK12901 241 VDcIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGPVPKG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 231 -----TALYNRVDNFV--------------KRLKEEEDYK---------------------------------------- 251
Cdd:PRK12901 321 ddqefEELKPRVERLVeaqrklatqflaeaKKLIAEGDKKegglallrayrglpknkalikflseegikallqktenfym 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 252 -----------------IDIQSKTIGLTEKGIEK----------------AEETFGLENLYDIEN--------------- 283
Cdd:PRK12901 401 qdnnrempevdeelyfvIDEKNNSVELTDKGIDYitgndedpdffvlpdiGTELAEIENEGGLDEeeeaekkeelfqdys 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 284 --TALTHHMDQALRANYIMIRDIDYVVQEGKVLIVDQFTGRIMDGRRYSDGLHQAIEAKENVEIEDETKTMATITFQNYF 361
Cdd:PRK12901 481 vkSERVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYF 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 362 RMYKKLSGMTGTAKTEEEEFREIYNMQVIQIPTNRPIVRDDRADLLYPTLESKFHAVVQDIKERHRKGQPVLVGTVAVET 441
Cdd:PRK12901 561 RMYHKLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEI 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 442 SELLSSMLDREKVPHEVLNAKNHFKEAEIILNAGQKGAVTIATNMAGRGTDIKLGLGVAELGGLAVIGTERHESRRIDNQ 521
Cdd:PRK12901 641 SELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQ 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 522 LRGRSGRQGDPGVSQFYLSLEDDLMKRFGSERIKVFLDRMKIdEEDAVIQSKMLSKQVESAQKRVEGNNYDTRKNVLQYD 601
Cdd:PRK12901 721 LRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMGL-KEGEVIQHSMISKSIERAQKKVEENNFGIRKRLLEYD 799
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 602 DVMREQREVIYGQRQEVIMEEQdLSQTLMNMVKRSIERVVDSHTQLEesnwNYEGIVDFAGNALVHEDSISVDDIKGKKP 681
Cdd:PRK12901 800 DVMNSQREVIYKRRRHALMGER-LGMDIANMIYDVCEAIVENNKVAN----DYKGFKFELIRTLAMESPITEEEFNKLKK 874
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 682 QEIKDYLYQRAEEVFEQKKAQL---------------------------------------------NSQEQLLEFEKVV 716
Cdd:PRK12901 875 DELTDKLYDAALENYQRKMERIaeiafpvikqvyeeqgnmyerivvpftdgkrtlnvvtnlkeayetEGKEIVKDFEKNI 954
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 717 ILRVVDTKWTDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYNMFEDMVGAIEYEVTRLFMKAEI--------------- 781
Cdd:PRK12901 955 TLHIIDEAWKEHLREMDELKQSVQNASYEQKDPLLIYKFESFELFKNMVDKVNREVISFLFKGEIpvqeapeireaaper 1034
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489219147 782 --RQNVQ--------REQVAQGEAQETETVPEEDP-SFKNVGRNDPCPC-----GSGKKFKNCHGKK 832
Cdd:PRK12901 1035 rlDPKYRtqkeeiqdSDQRAAASRDTGAQVKETPVrVEKKIGRNDPVPCqnvdgGSGKKYKFKHAEN 1101
|
|
| secA |
CHL00122 |
preprotein translocase subunit SecA; Validated |
6-781 |
0e+00 |
|
preprotein translocase subunit SecA; Validated
Pssm-ID: 214371 [Multi-domain] Cd Length: 870 Bit Score: 875.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 6 RKLIENDKKELKRLDHIASQVESHADEMAALSDEQLREKTDEFRGRFQQGETLDQLLPEAFAVVREAAKRVLGLYPYHVQ 85
Cdd:CHL00122 2 FNNLFNNKSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTREASFRTLGLRHFDVQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 86 LMGGIVLHDGNIPEMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSKTAEEKR 165
Cdd:CHL00122 82 LIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 166 AAYACDITYSTNNELGFDYLRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYNRVDNFVKRLK 245
Cdd:CHL00122 162 KNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKYLE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 246 EEEDYKIDIQSKTIGLTEKGIEKAEETFGLENLYDIENTALtHHMDQALRANYIMIRDIDYVVQEGKVLIVDQFTGRIMD 325
Cdd:CHL00122 242 KNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWI-PYILNALKAKELFFKNVHYIVRNNEIIIVDEFTGRIMP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 326 GRRYSDGLHQAIEAKENVEIEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFREIYNMQVIQIPTNRPIVRDDRAD 405
Cdd:CHL00122 321 GRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRKDLPD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 406 LLYPTLESKFHAVVQDIKERHRKGQPVLVGTVAVETSELLSSMLDREKVPHEVLNAK--NHFKEAEIILNAGQKGAVTIA 483
Cdd:CHL00122 401 LIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKpeNVRRESEIVAQAGRKGSITIA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 484 TNMAGRGTDIKLG-------------------------------------------------------LGVAE------- 501
Cdd:CHL00122 481 TNMAGRGTDIILGgnpefklkkelydlllsyksnekistisqnflnilnslkndlkflslsdfenlkiLNEASeisipkn 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 502 ------------------------------LGGLAVIGTERHESRRIDNQLRGRSGRQGDPGVSQFYLSLEDDLMKRFGS 551
Cdd:CHL00122 561 syqlslrflynellekykklqekekkivkkLGGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDNLLRIFGG 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 552 ERIKVFLDRMKIDEEDavIQSKMLSKQVESAQKRVEGNNYDTRKNVLQYDDVMREQREVIYGQRQEvIMEEQDLSQTLMN 631
Cdd:CHL00122 641 DKIQNLMQTLNLDDEP--LESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRK-ILESQSLRDWILA 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 632 MVKRSIERVVDSHTQLEESNWNYEGIVDFAGNALVHEDSISVDDIKGKKPQEIKDYLYQRAEEVFEQKKAQL-NSQEQLL 710
Cdd:CHL00122 718 YGEQVIDDIITFLKSRKNPNNKFINLINKFKELLKLPLCFNKSDLNTLNSGELKKFLYQQFWISYDLKELYLeQIGTGLM 797
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489219147 711 -EFEKVVILRVVDTKWTDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYNMFEDMVGAIEYEVTRLFMKAEI 781
Cdd:CHL00122 798 rELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMINHIRHLVIYDLFRSSI 869
|
|
| secA2 |
TIGR03714 |
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA ... |
12-764 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 163426 [Multi-domain] Cd Length: 762 Bit Score: 872.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 12 DKKELKRLDHIASQVESHADEMAALSDEQLREKTDEFRGRFQQGETLDQLLPEAFAVVREAAKRVLGLYPYHVQLMGGIV 91
Cdd:TIGR03714 2 NNLRLKKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKRVLGMFPYDVQVLGAIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 92 LHDGNIPEMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNI--NSK---TAEEKRA 166
Cdd:TIGR03714 82 LHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVvdDPDeeyDANEKRK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 167 AYACDITYSTNNELGFDYLRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYNRVDNFVKRLKE 246
Cdd:TIGR03714 162 IYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 247 EEDYKIDIQSKTIGLTEKGIEKAEETFGLENLYDIENTALTHHMDQALRANYIMIRDIDYVVQEGKVLIVDQFTGRIMDG 326
Cdd:TIGR03714 242 DVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEG 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 327 RRYSDGLHQAIEAKENVEIEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFREIYNMQVIQIPTNRPIVRDDRADL 406
Cdd:TIGR03714 322 TKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDK 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 407 LYPTLESKFHAVVQDIKERHRKGQPVLVGTVAVETSELLSSMLDREKVPHEVLNAKNHFKEAEIILNAGQKGAVTIATNM 486
Cdd:TIGR03714 402 IYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKGAVTVATSM 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 487 AGRGTDIKLGLGVAELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGVSQFYLSLEDDLMKRFGSER-IKVFLDRMKID- 564
Cdd:TIGR03714 482 AGRGTDIKLGKGVAELGGLAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWlKKYYKKYSVKDs 561
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 565 -EEDAVIQSKMLSKQVESAQKRVEGNNYDTRKNVLQYDDVMREQREVIYGQRQEVIMEEQDLSQTLMNMVKRSIERVVDS 643
Cdd:TIGR03714 562 kLKPSALFKRRFRKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEGSDFLDDDVDQIIDDVFNMYAEE 641
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 644 HTQLEESNwnyegIVDFAGNALVHEDSISVDDIKGKKPQEIKDYLYQRAEEVFEQKKAQLNSQEQLLEFEKVVILRVVDT 723
Cdd:TIGR03714 642 QDLSNKSL-----LKRFILENLSYQFKNDPDEFDLKNKEAIKDFLKEIADKELSEKKKVLNNDYLFNDFERLSILKAIDE 716
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 489219147 724 KWTDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYNMFEDM 764
Cdd:TIGR03714 717 NWIEQVDYLQQLKTVVTNRQNGQRNPIFEYHKEALESYEYM 757
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
5-382 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 743.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 5 FRKLIEND-KKELKRLDHIASQVESHADEMAALSDEQLREKTDEFRGRFQQGETLDQLLPEAFAVVREAAKRVLGLYPYH 83
Cdd:smart00957 1 LKKLFGSKnDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 84 VQLMGGIVLHDGNIPEMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSKTAEE 163
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 164 KRAAYACDITYSTNNELGFDYLRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEK-STALYNRVDNFVK 242
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDeSSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 243 RLKEEEDYKIDIQSKTIGLTEKGIEKAEETFGLENLYDIENTALTHHMDQALRANYIMIRDIDYVVQEGKVLIVDQFTGR 322
Cdd:smart00957 241 RLKEDEDYTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPENIELLHHVNQALRAHYLFKRDVDYIVRDGEVVIVDEFTGR 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 323 IMDGRRYSDGLHQAIEAKENVEIEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFR 382
Cdd:smart00957 321 VMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
4-382 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 684.61 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 4 FFRKLIENDKKELKRLDHIASQVESHADEMAALSDEQLREKTDEFRGRFQQGETLDQLLPEAFAVVREAAKRVLGLYPYH 83
Cdd:pfam07517 1 LKKIFGSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 84 VQLMGGIVLHDGNIPEMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSKTAEE 163
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 164 KRAAYACDITYSTNNELGFDYLRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKSTALYNRVDNFVKR 243
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 244 LKEEEDYKIDIQSKTIGLTEKGIEKAEETFGLENLYDIENTALTHHMDQALRANYIMIRDIDYVVQEGKVLIVDQFTGRI 323
Cdd:pfam07517 241 LEEDGDYEIDEKSKNVELTEKGIEKIEKLLGIDNLYDPENVELLHHINQALKAHHLFKRDVDYIVRDGEVVIVDEFTGRV 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 489219147 324 MDGRRYSDGLHQAIEAKENVEIEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFR 382
Cdd:pfam07517 321 MPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEFR 379
|
|
| secA |
PRK12898 |
preprotein translocase subunit SecA; Reviewed |
16-601 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237253 [Multi-domain] Cd Length: 656 Bit Score: 675.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 16 LKRLDHIASQVESHADEMAALSDEQLREKTDEFRGRFQQGETL-DQLLPEAFAVVREAAKRVLGLYPYHVQLMGGIVLHD 94
Cdd:PRK12898 38 ARRQRLLADRVLAAAEALAGLSEEALRARSLALRARLRARDGFrDALLAEAFALVREASGRVLGQRHFDVQLMGGLALLS 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 95 GNIPEMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSKTAEEKRAAYACDITY 174
Cdd:PRK12898 118 GRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAYGADITY 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 175 STNNELGFDYLRDNMVVYR-------------------HQMVQRPLNYAIVDEVDSILIDEARTPLIISG--QAEKSTAL 233
Cdd:PRK12898 198 CTNKELVFDYLRDRLALGQrasdarlaleslhgrssrsTQLLLRGLHFAIVDEADSVLIDEARTPLIISApaKEADEAEV 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 234 YNRVDNFVKRLKEEEDYKIDIQSKTIGLTEKGIEKAEETfgLENLYDIENTALTHH--MDQALRANYIMIRDIDYVVQEG 311
Cdd:PRK12898 278 YRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAEL--AESLPPAWRGAVRREelVRQALSALHLFRRDEHYIVRDG 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 312 KVLIVDQFTGRIMDGRRYSDGLHQAIEAKENVEIEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFREIYNMQVIQ 391
Cdd:PRK12898 356 KVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVR 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 392 IPTNRPIVRDDRADLLYPTLESKFHAVVQDIKERHRKGQPVLVGTVAVETSELLSSMLDREKVPHEVLNAKNHFKEAEII 471
Cdd:PRK12898 436 IPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIV 515
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 472 LNAGQKGAVTIATNMAGRGTDIKLGLGVAELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGVSQFYLSLEDDLMKRFGS 551
Cdd:PRK12898 516 ARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFLG 595
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 489219147 552 ERikvFLDRMKIDEEDAVIQSKMLSKQVESAQKRVEGNNYDTRKNVLQYD 601
Cdd:PRK12898 596 SR---GLAIRRMELLGPRGGRALGALLLRRAQRRAERLHARARRALLHAD 642
|
|
| SecA2_Mycobac |
TIGR04221 |
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the ... |
4-781 |
0e+00 |
|
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the SecA2 subunit of the Mycobacterial type of accessory secretory system. This family is quite different SecA2 of the Staph/Strep type (TIGR03714).
Pssm-ID: 275062 [Multi-domain] Cd Length: 762 Bit Score: 571.38 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 4 FFRKLIENDKKELKRLDHIASQVESHADEMAALSDEQLREKTDEFRgrfQQGETLDqlLPEAFAVVREAAKRVLGLYPYH 83
Cdd:TIGR04221 5 FWKALGSSTERNQKRSLAIVPAAASRMKELSALDDEELTKAARDLV---LSGEAAD--AAQFLAILREAAERTLGMRPFD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 84 VQLMGGIVLHDGNIPEMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSKTAEE 163
Cdd:TIGR04221 80 VQLLGALRLLAGDVIEMATGEGKTLAGAMAATGFALLGKRVHVVTVNDYLARRDAEWMGPLVDFFGLTVGWVTEDSTPDE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 164 KRAAYACDITYSTNNELGFDYLRDNMVVYRHQMVQRPLNYAIVDEVDSILIDEARTPLIISGqAEKSTALYNRVDNFVKR 243
Cdd:TIGR04221 160 RRAAYACDVTYASVNEIGFDVLRDQLVTDRADLVQPAADVALIDEADSVLVDEALVPLVLAG-NEPGEAPRGRITDLVRR 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 244 LKEEEDYKIDIQSKTIGLTEKGIEKAEETFGLENLYDIEN--TALTHhMDQALRANYIMIRDIDYVVQEGKVLIVDQFTG 321
Cdd:TIGR04221 239 LREDKHYTVDEDGRNVHLTEDGARAVEAELGIDDLYSEEHvgTTLVQ-VNVALHAHALLIRDVHYIVRDGKVALIDASRG 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 322 RIMDGRRYSDGLHQAIEAKENVEIEDETKTMATITFQNYFRMYKKLSGMTGTAKTEEEEFREIYNMQVIQIPTNRPIVRD 401
Cdd:TIGR04221 318 RVAQLQRWPDGLQAAVEAKEGLEVTEGGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNTPNIRF 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 402 DRADLLYPTLESKFHAVVQDIKERHRKGQPVLVGTVAVETSELLSSMLDREKVPHEVLNAKNHFKEAEIILNAGQKGAVT 481
Cdd:TIGR04221 398 DEADRVYATAAEKNDAIVEEIAEVHKTGQPVLVGTQDVAESEELAEALLEAGVPCNVLNAKNDAEEAAIIAEAGDIGAVT 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 482 IATNMAGRGTDIKLGLG-------VAELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGVSQFYLSLEDDLMKRfGSERI 554
Cdd:TIGR04221 478 VSTQMAGRGTDIRLGGSdeadhdrVAELGGLHVIGTGRHRTARLDNQLRGRAGRQGDPGSSVFFVSLEDDVVAV-GGAGE 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 555 KVfldRMKIDeEDAVIQSKMLSKQVESAQKRVEGNNYDTRKNVLQYDDVMREQREVIYGQRqevimeeqdlsqtlmnmvk 634
Cdd:TIGR04221 557 TV---PAQPA-EDGRIESPRVQDFVDHAQRVAEGQLLEIHANTWRYNQLIAQQRDIIDERR------------------- 613
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 635 rsiERVVDSHTQleesnWnyegivdfagnalvhedsisvddikgkkpQEIKDYLYQRAEEVFEQKkaqlnSQEQLLEFEK 714
Cdd:TIGR04221 614 ---ETLLDTDTA-----W-----------------------------QELSERAADRAAELKKEV-----SEDALERAAR 651
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489219147 715 VVILRVVDTKWTDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYNMFEDMVGAIEYEVTRLFMKAEI 781
Cdd:TIGR04221 652 EIMLYHLDRGWAEHLAYLDDVRESIHLRALGRETPLDEFHRMAVRAFKELAQRAVDKAVETFEEVEI 718
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
40-394 |
1.46e-134 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 399.22 E-value: 1.46e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 40 QLREKTDEFRGRFQQGETLDQLLPEAFAVVREAAKRVLGLYPYHVQLMGGIVLHDGNIPEMRTGEGKTLTATLPVYLNAL 119
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 120 SGAGVHVVTVNEYLATRDSTEMGELYNFLGLTVGLNINSKTAEEKRAAYACDITYSTNNELGFDYLRDNMVVYRHQMVQR 199
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 200 PLNYAIVDEVDSILIDEARTPLIISGqaekstalynrvdnfvkrlkeeedykidiqsktigltekgiekaeetfglenly 279
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 280 dientalthhmdqalranyimirdidyvvqegkvlivdqftgrimdgrrysdglhqaieakenveiedetkTMATITFQN 359
Cdd:cd17928 187 -----------------------------------------------------------------------TLATITFQN 195
|
330 340 350
....*....|....*....|....*....|....*
gi 489219147 360 YFRMYKKLSGMTGTAKTEEEEFREIYNMQVIQIPT 394
Cdd:cd17928 196 YFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| SecA_SW |
pfam07516 |
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts ... |
569-780 |
4.45e-90 |
|
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This family is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.
Pssm-ID: 462189 [Multi-domain] Cd Length: 213 Bit Score: 282.84 E-value: 4.45e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 569 VIQSKMLSKQVESAQKRVEGNNYDTRKNVLQYDDVMREQREVIYGQRQEVIMEEqDLSQTLMNMVKRSIERVVDSHTQLE 648
Cdd:pfam07516 1 PIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNQQREVIYAQRREILEGE-DLKEDILEMIEDVVDDIVDEYIPPE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 649 ES--NWNYEGIVD-FAGNALVHEDSISVDDIKGKKPQEIKDYLYQRAEEVFEQKKAQLnSQEQLLEFEKVVILRVVDTKW 725
Cdd:pfam07516 80 ESpeEWDLEGLKEaLNEIFGLELPISEWEEEEDLDKEELKERLLEAAEEAYEEKEEEI-GPELMRELERVVLLQVIDSKW 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 489219147 726 TDHIDAMDQLRQSVGLRAYGQNNPLVEYQTEGYNMFEDMVGAIEYEVTRLFMKAE 780
Cdd:pfam07516 159 KEHLDAMDQLRQGIGLRAYGQKDPLVEYKREGFELFEEMLDAIREEVVRYLFRVQ 213
|
|
| SF2_C_secA |
cd18803 |
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the ... |
400-540 |
1.42e-85 |
|
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350190 [Multi-domain] Cd Length: 141 Bit Score: 268.26 E-value: 1.42e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 400 RDDRADLLYPTLESKFHAVVQDIKERHRKGQPVLVGTVAVETSELLSSMLDREKVPHEVLNAKNHFKEAEIILNAGQKGA 479
Cdd:cd18803 1 RKDLPDLVYKTEEEKWKAIVEEVKELHAKGQPVLVGTRSVEKSELLSALLKEEGIPHNVLNAKNHAREAEIIAEAGQKGA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489219147 480 VTIATNMAGRGTDIKLGLGVAELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGVSQFYLS 540
Cdd:cd18803 81 VTIATNMAGRGTDIKLGGNVEELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 141
|
|
| SecA_PP_bind |
pfam01043 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
229-338 |
1.35e-59 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 460039 [Multi-domain] Cd Length: 110 Bit Score: 197.63 E-value: 1.35e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 229 KSTALYNRVDNFVKRLKEEEDYKIDIQSKTIGLTEKGIEKAEETFGLENLYDIENTALTHHMDQALRANYIMIRDIDYVV 308
Cdd:pfam01043 1 KSTELYRQADKFVKQLKEDEDYEVDEKAKTVELTEEGIEKAEKLLGIDNLYDPENIELVHHINQALKAHHLFKRDVDYIV 80
|
90 100 110
....*....|....*....|....*....|
gi 489219147 309 QEGKVLIVDQFTGRIMDGRRYSDGLHQAIE 338
Cdd:pfam01043 81 KDGEVVIVDEFTGRLMPGRRYSDGLHQAIE 110
|
|
| SecA_PP_bind |
smart00958 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
226-338 |
3.03e-59 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 214938 [Multi-domain] Cd Length: 114 Bit Score: 196.52 E-value: 3.03e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 226 QAEKSTALYNRVDNFVKRLKE-EEDYKIDIQSKTIGLTEKGIEKAEETFGLENLYDIENTALTHHMDQALRANYIMIRDI 304
Cdd:smart00958 1 PAEDSSELYKRADELVPTLKKdEEDYEVDEKSRQVALTEEGIEKAEKLLGIDNLYDPENIELVHHVNQALRAHKLFKRDV 80
|
90 100 110
....*....|....*....|....*....|....
gi 489219147 305 DYVVQEGKVLIVDQFTGRIMDGRRYSDGLHQAIE 338
Cdd:smart00958 81 DYIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIE 114
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
99-222 |
6.86e-14 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 69.74 E-value: 6.86e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 99 EMRTGEGKTLTATLPVYLNALS-GAGVHVVTVNEYLATRDSTEMGELYnFLGLTVGLNINSKTAEEKRAAYA--CDITYS 175
Cdd:cd00046 7 TAPTGSGKTLAALLAALLLLLKkGKKVLVLVPTKALALQTAERLRELF-GPGIRVAVLVGGSSAEEREKNKLgdADIIIA 85
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 489219147 176 TNNELGFDYLRDnmvvyrHQMVQRPLNYAIVDEVDSILIDEARTPLI 222
Cdd:cd00046 86 TPDMLLNLLLRE------DRLFLKDLKLIIVDEAHALLIDSRGALIL 126
|
|
| YecA |
COG3318 |
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ... |
809-832 |
7.34e-12 |
|
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];
Pssm-ID: 442547 [Multi-domain] Cd Length: 45 Bit Score: 60.68 E-value: 7.34e-12
10 20
....*....|....*....|....
gi 489219147 809 KNVGRNDPCPCGSGKKFKNCHGKK 832
Cdd:COG3318 22 PKVGRNDPCPCGSGKKYKKCCGAN 45
|
|
| PRK05590 |
PRK05590 |
hypothetical protein; Provisional |
811-832 |
3.43e-10 |
|
hypothetical protein; Provisional
Pssm-ID: 235521 Cd Length: 166 Bit Score: 59.60 E-value: 3.43e-10
|
| SEC-C |
pfam02810 |
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ... |
813-831 |
5.00e-10 |
|
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.
Pssm-ID: 460704 [Multi-domain] Cd Length: 19 Bit Score: 54.79 E-value: 5.00e-10
|
| DEAD-like_helicase_C |
cd09300 |
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases ... |
480-538 |
1.33e-09 |
|
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases is composed of two superfamilies, SF1 and SF2, that share almost identical folds and extensive structural similarity in their catalytic core. Helicases are involved in ATP-dependent RNA or DNA unwinding. Two distinct types of helicases exist, those forming toroidal, predominantly hexameric structures, and those that do not. SF1 and SF2 helicases do not form toroidal structures, while SF3-6 helicases do. Their conserved helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350171 [Multi-domain] Cd Length: 59 Bit Score: 54.48 E-value: 1.33e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 489219147 480 VTIATNMAGRGTDIklglgvaeLGGLAVIGTERHESRRIDNQLRGRSGRQGDPGVSQFY 538
Cdd:cd09300 8 VLIAVN*ALTGFDA--------PELNTIIVDKNLRSYRGLNQAFGRANRIYTFGGIVTY 58
|
|
| PRK01617 |
PRK01617 |
hypothetical protein; Provisional |
811-831 |
4.16e-08 |
|
hypothetical protein; Provisional
Pssm-ID: 234966 Cd Length: 154 Bit Score: 53.11 E-value: 4.16e-08
|
| PRK02250 |
PRK02250 |
hypothetical protein; Provisional |
799-830 |
7.15e-08 |
|
hypothetical protein; Provisional
Pssm-ID: 179393 [Multi-domain] Cd Length: 166 Bit Score: 52.96 E-value: 7.15e-08
10 20 30
....*....|....*....|....*....|....*...
gi 489219147 799 ETVPEEDP------SFKNVGRNDPCPCGSGKKFKNCHG 830
Cdd:PRK02250 129 EEEPEQDPrlnqsvSSLKQGRNDPCICGSGKKFKKCCG 166
|
|
| SWIM_PBPRA1643 |
TIGR04102 |
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ... |
809-830 |
8.80e-07 |
|
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.
Pssm-ID: 200353 [Multi-domain] Cd Length: 108 Bit Score: 48.07 E-value: 8.80e-07
|
| DEAD-like_helicase_N |
cd17912 |
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ... |
99-137 |
1.86e-06 |
|
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.
Pssm-ID: 350670 [Multi-domain] Cd Length: 81 Bit Score: 46.36 E-value: 1.86e-06
10 20 30
....*....|....*....|....*....|....*....
gi 489219147 99 EMRTGEGKTLTATLPVYLNALSGAGVHVVTVNEYLATRD 137
Cdd:cd17912 5 LGPTGSGKTLVAIQKIASAMSSGKSVLVVTPTKLLAHEI 43
|
|
| PRK10396 |
PRK10396 |
hypothetical protein; Provisional |
797-828 |
3.14e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 236680 [Multi-domain] Cd Length: 221 Bit Score: 48.97 E-value: 3.14e-06
10 20 30
....*....|....*....|....*....|..
gi 489219147 797 ETETVPEEDPSFKNVGRNDPCPCGSGKKFKNC 828
Cdd:PRK10396 187 QEKAVQQPIKAEEKVGRNDPCPCGSGKKFKQC 218
|
|
| PRK00183 |
PRK00183 |
hypothetical protein; Provisional |
805-828 |
4.72e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 166842 Cd Length: 157 Bit Score: 47.49 E-value: 4.72e-06
10 20
....*....|....*....|....*
gi 489219147 805 DPSFK-NVGRNDPCPCGSGKKFKNC 828
Cdd:PRK00183 127 DPTVPlKAGRNDPCPCGSGQKFKKC 151
|
|
| SF2_C |
cd18785 |
C-terminal helicase domain of superfamily 2 DEAD/H-box helicases; Superfamily (SF)2 helicases ... |
462-538 |
7.21e-06 |
|
C-terminal helicase domain of superfamily 2 DEAD/H-box helicases; Superfamily (SF)2 helicases include DEAD-box helicases, UvrB, RecG, Ski2, Sucrose Non-Fermenting (SNF) family helicases, and dicer proteins, among others. Similar to SF1 helicases, they do not form toroidal structures like SF3-6 helicases. SF2 helicases are a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Their helicase core is surrounded by C- and N-terminal domains with specific functions such as nucleases, RNA or DNA binding domains, or domains engaged in protein-protein interactions. The core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350172 [Multi-domain] Cd Length: 77 Bit Score: 44.62 E-value: 7.21e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489219147 462 KNHFKEAEIILNAGQkgaVTIATNMAGRGTDIklglgvaeLGGLAVIGTERHESRRIDNQLRGRSGRQG-DPGVSQFY 538
Cdd:cd18785 10 TNSIEHAEEIASSLE---ILVATNVLGEGIDV--------PSLDTVIFFDPPSSAASYIQRVGRAGRGGkDEGEVILF 76
|
|
| PRK12318 |
PRK12318 |
methionyl aminopeptidase; |
811-829 |
3.93e-04 |
|
methionyl aminopeptidase;
Pssm-ID: 183434 [Multi-domain] Cd Length: 291 Bit Score: 43.27 E-value: 3.93e-04
|
| SF2_C_DEAD |
cd18787 |
C-terminal helicase domain of the DEAD box helicases; DEAD-box helicases comprise a diverse ... |
412-494 |
7.27e-03 |
|
C-terminal helicase domain of the DEAD box helicases; DEAD-box helicases comprise a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis, and RNA degradation. They are superfamily (SF)2 helicases that, similar to SF1, do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350174 [Multi-domain] Cd Length: 131 Bit Score: 37.49 E-value: 7.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219147 412 ESKFHAVVQDIKERHRKGQpVLVGTVAVETSELLSSMLDREKVPHEVLNAKNHFKEAEIILNAGQKGAVTI--ATNMAGR 489
Cdd:cd18787 11 EEKKLLLLLLLLEKLKPGK-AIIFVNTKKRVDRLAELLEELGIKVAALHGDLSQEERERALKKFRSGKVRVlvATDVAAR 89
|
....*
gi 489219147 490 GTDIK 494
Cdd:cd18787 90 GLDIP 94
|
|
| |
