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Conserved domains on  [gi|489219209|ref|WP_003127685|]
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MULTISPECIES: 30S ribosomal protein S16 [Enterococcus]

Protein Classification

small ribosomal subunit protein bS16( domain architecture ID 10000742)

small ribosomal subunit protein bS16, also called 30S ribosomal protein S16, is a ribosomal protein that may have a cation-dependent endonuclease activity

CATH:  3.30.1320.10
Gene Ontology:  GO:0003735|GO:0006412|GO:0015935
PubMed:  24524803|12900959|11297922|11290319
SCOP:  4001077

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 2-77 9.22e-52

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 439998  Cd Length: 76  Bit Score: 156.36  E-value: 9.22e-52
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489219209  2 AVKIRLKRMGSKKKPFYRIVVADSRSPRDGRFIETVGTYNPLQDPAEVTIKEDLILDWLSKGAQPSDTVRNILSKE 77
Cdd:COG0228   1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPARIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
 
Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 2-77 9.22e-52

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 156.36  E-value: 9.22e-52
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489219209  2 AVKIRLKRMGSKKKPFYRIVVADSRSPRDGRFIETVGTYNPLQDPAEVTIKEDLILDWLSKGAQPSDTVRNILSKE 77
Cdd:COG0228   1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPARIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
rpsP PRK14521
30S ribosomal protein S16; Provisional
 1-84 1.94e-45

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 144.15  E-value: 1.94e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219209   1 MAVKIRLKRMGSKKKPFYRIVVADSRSPRDGRFIETVGTYNPLQDPAEVTIKEDLILDWLSKGAQPSDTVRNILSKEGVM 80
Cdd:PRK14521   1 MAVKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPNTNPATVDLNFDRAVYWLMNGAQPTDTARNILSYEGVL 80


                 ....
gi 489219209  81 KKHH 84
Cdd:PRK14521  81 LKKH 84
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 3-80 8.75e-44

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 136.22  E-value: 8.75e-44
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489219209   3 VKIRLKRMGSKKKPFYRIVVADSRSPRDGRFIETVGTYNPLQDPAEVTIKEDLILDWLSKGAQPSDTVRNILSKEGVM 80
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKEDLVKLNVERIKHWLSKGAQPTDTVRKLLKKAGVF 78
Ribosomal_S16 pfam00886
Ribosomal protein S16;
9-67 4.78e-36

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 116.32  E-value: 4.78e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489219209   9 RMGSKKKPFYRIVVADSRSPRDGRFIETVGTYNPLQDPAE--VTIKEDLILDWLSKGAQPS 67
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPGEprVKLDEERIKYWLGVGAQPT 61
 
Name Accession Description Interval E-value
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 2-77 9.22e-52

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 156.36  E-value: 9.22e-52
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489219209  2 AVKIRLKRMGSKKKPFYRIVVADSRSPRDGRFIETVGTYNPLQDPAEVTIKEDLILDWLSKGAQPSDTVRNILSKE 77
Cdd:COG0228   1 MVKIRLARGGAKKRPFYRIVVADSRSPRDGRFIERIGFYNPLTNPARIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
rpsP PRK14521
30S ribosomal protein S16; Provisional
 1-84 1.94e-45

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 144.15  E-value: 1.94e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219209   1 MAVKIRLKRMGSKKKPFYRIVVADSRSPRDGRFIETVGTYNPLQDPAEVTIKEDLILDWLSKGAQPSDTVRNILSKEGVM 80
Cdd:PRK14521   1 MAVKIRLQRHGRKGKAFYWIVAADSRAPRDGKFIEKIGTYNPNTNPATVDLNFDRAVYWLMNGAQPTDTARNILSYEGVL 80


                 ....
gi 489219209  81 KKHH 84
Cdd:PRK14521  81 LKKH 84
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 3-80 8.75e-44

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 136.22  E-value: 8.75e-44
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489219209   3 VKIRLKRMGSKKKPFYRIVVADSRSPRDGRFIETVGTYNPLQDPAEVTIKEDLILDWLSKGAQPSDTVRNILSKEGVM 80
Cdd:TIGR00002  1 VKIRLKRGGRKKRPFYRIVVADSRSRRDGRYIEELGFYNPITKEDLVKLNVERIKHWLSKGAQPTDTVRKLLKKAGVF 78
Ribosomal_S16 pfam00886
Ribosomal protein S16;
9-67 4.78e-36

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 116.32  E-value: 4.78e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489219209   9 RMGSKKKPFYRIVVADSRSPRDGRFIETVGTYNPLQDPAE--VTIKEDLILDWLSKGAQPS 67
Cdd:pfam00886  1 RMGRKKRPFYRIVVADSRSPRDGRFIEELGTYNPLAEPGEprVKLDEERIKYWLGVGAQPT 61
rpsP PRK14520
30S ribosomal protein S16; Provisional
 1-78 6.02e-32

30S ribosomal protein S16; Provisional


Pssm-ID: 184724 [Multi-domain]  Cd Length: 155  Bit Score: 108.63  E-value: 6.02e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489219209   1 MAVKIRLKRMGSKKKPFYRIVVADSRSPRDGRFIETVGTYNPLQDPAEVTIKEDLILDWLSKGAQPSDTVRNILSKEG 78
Cdd:PRK14520   1 MAVKIKLKRLGKIRNPQYRIVVADSRTKRDGRAIEEIGRYHPKEEPSLIEIDSERAQYWLSVGAQPTEPVLALLKITG 78
rps16 CHL00005
ribosomal protein S16
 3-84 1.05e-26

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 93.17  E-value: 1.05e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489219209  3 VKIRLKRMGSKKKPFYRIVVADSRSPRDGRFIETVGTYNPLQDPAEVTIkeDLILDWLSKGAQPSDTVRNILSKEGVMKK 82
Cdd:CHL00005  2 VKLRLKRCGRKQQAVYRIVAIDVRSRREGRDLEKVGFYDPIKNQTYLNV--PAILYFLEKGAQPTETVYDILKKAEVFKE 79


                ..
gi 489219209 83 HH 84
Cdd:CHL00005 80 LS 81
rpsP PRK14522
30S ribosomal protein S16; Provisional
 1-78 2.00e-15

30S ribosomal protein S16; Provisional


Pssm-ID: 172988 [Multi-domain]  Cd Length: 116  Bit Score: 65.79  E-value: 2.00e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489219209   1 MAVKIRLKRMGSKKKPFYRIVVADSRSPRDGRFIETVGTYNPlQDPAEVTIKEDLILDWLSKGAQPSDTVrNILSKEG 78
Cdd:PRK14522   1 MALKIRLRQQGRRNHVVYRLVLADVESPRDGKYIELLGWYDP-HSEQNYQLKSERIFYWLNQGAELTEKA-GALVKQG 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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