|
Name |
Accession |
Description |
Interval |
E-value |
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
93-298 |
5.50e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 68.10 E-value: 5.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 93 YYFKANNYAHLGLFQEAYKAAETYLKEDPDGEFSEENAELLDLLDMGEEDQGYSQFDQDDLILK-QDRAKSLLENGQLQE 171
Cdd:COG3914 17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALlELAALLLQALGRYEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 172 SIAMLEEIISDYPEFWSAYNNLALAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHYERRDDKVEALSEQLSNIY 251
Cdd:COG3914 97 ALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 489277918 252 PMLFEQRYKLGATLALVGRYDLGFKWLKSLYRMGFEGDETFYYWLAC 298
Cdd:COG3914 177 PDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFA 223
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
30-247 |
1.05e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 65.14 E-value: 1.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 30 KAYRER-NLSRASKLIQRAIFLEPENTGMLSQLAVIYTEMGFYQQSNELLDFILKnINEKMTECYYFKANNYAHLGLFQE 108
Cdd:COG2956 50 NLYRRRgEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLE-LDPDDAEALRLLAEIYEQEGDWEK 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 109 AYKAAETYLKEDPD-GEFSEENAELLdlLDMGEEDQGYSQFDQ------DDLILKQDRAKSLLENGQLQESIAMLEEIIS 181
Cdd:COG2956 129 AIEVLERLLKLGPEnAHAYCELAELY--LEQGDYDEAIEALEKalkldpDCARALLLLAELYLEQGDYEEAIAALERALE 206
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489277918 182 DYPEFWSAYNNLALAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHYERRDDKVEALSEQL 247
Cdd:COG2956 207 QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
17-283 |
1.34e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 65.14 E-value: 1.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 17 LFQDGQYFyhKGLKAYRERNLSRASKLIQRAIFLEPENTGMLSQLAVIYTEMGFYQQSNELLDFILKnINEKMTECYYFK 96
Cdd:COG2956 6 AAALGWYF--KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLE-RDPDRAEALLEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 97 ANNYAHLGLFQEAYKAAETYLKEDPDgefseeNAELLDLLdmgeedqgysqfdqddlilkqdrAKSLLENGQLQESIAML 176
Cdd:COG2956 83 AQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLL-----------------------AEIYEQEGDWEKAIEVL 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 177 EEIISDYPEFWSAYNNLALAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHYERRDDKVEALSEQLSNIYPMLFE 256
Cdd:COG2956 134 ERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLP 213
|
250 260
....*....|....*....|....*..
gi 489277918 257 QRYKLGATLALVGRYDLGFKWLKSLYR 283
Cdd:COG2956 214 ALPRLAELYEKLGDPEEALELLRKALE 240
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
159-382 |
2.89e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.82 E-value: 2.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 159 RAKSLLENGQLQESIAMLEEIISDYPEFWSAYNNLALAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHYERRDD 238
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 239 KVEALSEQLSNIYPMLFEQRYKLGATLALVGRYDLGFKWLKSLYRMGfEGDETFYYWLACSAYYTGRVQFARSVWKKMQE 318
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG-PENAHAYCELAELYLEQGDYDEAIEALEKALK 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 319 EYPDDAR------------------MEPWKERKEKRPVQRPLEERLAAYYIsgRKGEKAQLKAVLDSQMAKTPFEDQFVR 380
Cdd:COG2956 173 LDPDCARallllaelyleqgdyeeaIAALERALEQDPDYLPALPRLAELYE--KLGDPEEALELLRKALELDPSDDLLLA 250
|
..
gi 489277918 381 LV 382
Cdd:COG2956 251 LA 252
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
20-263 |
6.17e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 56.55 E-value: 6.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 20 DGQYFYHKGLKAYRERNLSRASKLIQRAIFLEPENTGMLSQLAVIYTEMGFYQQSNELLDFILKnINEKMTECYYFKANN 99
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALE-LDPDDAEALNNLGLA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 100 YAHLGLFQEAYKAAETYLKEDPDgefseeNAELLDlldmgeedqgysqfdqddlilkqDRAKSLLENGQLQESIAMLEEI 179
Cdd:COG0457 86 LQALGRYEEALEDYDKALELDPD------DAEALY-----------------------NLGLALLELGRYDEAIEAYERA 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 180 ISDYPEFWSAYNNLALAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHYERRDDKVEALSEQLSNIYPMLFEQRY 259
Cdd:COG0457 137 LELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
....
gi 489277918 260 KLGA 263
Cdd:COG0457 217 AALA 220
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
157-284 |
9.30e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.96 E-value: 9.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 157 QDRAKSLLENGQLQESIAMLEEIISDYPEFWSAYNNLALAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHYERR 236
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 489277918 237 DDKVEALSEQLSNIYPMLFEQRYKLGATLALVGRYDLGFKWLKSLYRM 284
Cdd:COG4783 88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
85-283 |
5.20e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.78 E-value: 5.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 85 INEKMTECYYFKANNYAHLGLFQEAYKAAETYLKEDPDgefseeNAELLDLLdmgeedqgysqfdqddlilkqdrAKSLL 164
Cdd:COG0457 3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNL-----------------------GLAYL 53
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 165 ENGQLQESIAMLEEIISDYPEFWSAYNNLALAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHYERRDDKVEALS 244
Cdd:COG0457 54 RLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAY 133
|
170 180 190
....*....|....*....|....*....|....*....
gi 489277918 245 EQLSNIYPMLFEQRYKLGATLALVGRYDLGFKWLKSLYR 283
Cdd:COG0457 134 ERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEA 172
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
19-206 |
1.65e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 49.23 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 19 QDGQYFYHKGLKAYRERNLSRASKLIQRAIFLEPENTGMLSQLAVIYTEMGFYQQSNELLDFILKnINEKMTECYYFKAN 98
Cdd:COG0457 40 DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALE-LDPDDAEALYNLGL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 99 NYAHLGLFQEAYKAAETYLKEDPDGEFSEENAELLdLLDMGEEDQGYSQFDQDDLILKQDRAKSLLENGQLQESIAMLEE 178
Cdd:COG0457 119 ALLELGRYDEAIEAYERALELDPDDADALYNLGIA-LEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLL 197
|
170 180
....*....|....*....|....*...
gi 489277918 179 IISDYPEFWSAYNNLALAYFYAGDVQKA 206
Cdd:COG0457 198 ALLLALEQALRKKLAILTLAALAELLLL 225
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
100-253 |
1.91e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.65 E-value: 1.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 100 YAHLGLFQEAYKAAETYLKEDPDGEFSEENAELLDLLDMGEEDQGYSQFDQDDLILKQDRAKSLLENGQLQESIAMLEEI 179
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489277918 180 ISDYPEFWSAYNNLALAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHYERRDDKVEALSEQLSNIYPM 253
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
19-124 |
4.01e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.15 E-value: 4.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 19 QDGQYFYHKGLKAYRERNLSRASKLIQRAIFLEPENTGMLSQLAVIYTEMGFYQQSNELLDFILKnINEKMTECYYFKAN 98
Cdd:COG4235 15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALA-LDPDNPEALYLLGL 93
|
90 100
....*....|....*....|....*.
gi 489277918 99 NYAHLGLFQEAYKAAETYLKEDPDGE 124
Cdd:COG4235 94 AAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
19-185 |
1.38e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 46.54 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 19 QDGQYFYHKGLKAYRERNLSRASKLIQRAIFLEPENTGMLSQLAVIYTEMGFYQQSNELLDFILKnINEKMTECYYFKAN 98
Cdd:COG0457 74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALE-LDPDDADALYNLGI 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 99 NYAHLGLFQEAYKAAETYLKEDPDGEFSEENAELLDLLDMGEEDQGYSQFDQDDLILKQDRAKSLLENGQLQESIAMLEE 178
Cdd:COG0457 153 ALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLA 232
|
....*..
gi 489277918 179 IISDYPE 185
Cdd:COG0457 233 LRLAALA 239
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
19-122 |
5.38e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 43.26 E-value: 5.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 19 QDGQYFYHKGLKAYRERNLSRASKLIQRAIFLEPENTGMLSQLAVIYTEMGFYQQSNELLDFILKnINEKMTECYYFKAN 98
Cdd:COG4783 36 DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALK-LDPEHPEAYLRLAR 114
|
90 100
....*....|....*....|....
gi 489277918 99 NYAHLGLFQEAYKAAETYLKEDPD 122
Cdd:COG4783 115 AYRALGRPDEAIAALEKALELDPD 138
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
33-325 |
1.48e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 44.30 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 33 RERNLSRASKLIQRAIFLEPENTGMLSQLAVIYTEMGFYQQSNELLdfilkninEKMTECYYFKANNYAHLGLF------ 106
Cdd:TIGR02917 341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYL--------AKATELDPENAAARTQLGISklsqgd 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 107 -QEAYKAAETYLKEDPDGEfseeNAELLdlldmgeedqgysqfdqddLILkqdrakSLLENGQLQESIAMLEEIISDYPE 185
Cdd:TIGR02917 413 pSEAIADLETAAQLDPELG----RADLL-------------------LIL------SYLRSGQFDKALAAAKKLEKKQPD 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 186 FWSAYNNLALAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHYERRDDKVEALSEQLSNIYPMLFEQRYKLGATL 265
Cdd:TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLY 543
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489277918 266 ALVGRYDLGFKWLKSLYRMGfEGDETFYywLACSAYYTGRVQFARS--VWKKMQEEYPDDAR 325
Cdd:TIGR02917 544 LRTGNEEEAVAWLEKAAELN-PQEIEPA--LALAQYYLGKGQLKKAlaILNEAADAAPDSPE 602
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
180-324 |
1.82e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 43.07 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 180 ISDYPEFWSAYNNLALAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHYERRDDKVEALSEQLSNIYPMLFEQRY 259
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489277918 260 KLGATLALVGRYDLGFKWLKSLYRMGFEgDETFYYWLACSAYYTGRVQFARSVWKKMQEEYPDDA 324
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPD-DAEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
93-252 |
4.34e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.56 E-value: 4.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 93 YYFKANNYAHLGLFQEAYKAAETYLKEDPDgefseeNAELLDLLdmgeedqgysqfdqddlilkqdrAKSLLENGQLQES 172
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALL-----------------------GEILLQLGDLDEA 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 173 IAMLEEIISDYPEFWSAYNNLALAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHYERRDDKVEALSEQLSNIYP 252
Cdd:COG4783 58 IVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
116-248 |
6.09e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.44 E-value: 6.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 116 YLKEDPDGEFSEENAELLDLLDMgEEDQGYSQFDQDDLILKQDRAKSLLENGQLQESIAMLEEIISDYPEFWSAYNNLAL 195
Cdd:COG4785 37 LAIALADLALALAAAALAAAALA-AERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGL 115
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 489277918 196 AYFYAGDVQKAKTTVFTVLEKSHGNLHALCNL-LIFYHYERRDDKVEALSEQLS 248
Cdd:COG4785 116 AYLLLGDYDAALEDFDRALELDPDYAYAYLNRgIALYYLGRYELAIADLEKALE 169
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
35-310 |
9.48e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.99 E-value: 9.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 35 RNLSRASKLIQRAIFLEPENTGMLSQLAVIYTEMGFYQQSNELLDfILKNINEKMTECYYFKANNYAHlglfQEAYKAAE 114
Cdd:TIGR02917 649 KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK-SLQKQHPKAALGFELEGDLYLR----QKDYPAAI 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 115 TYLKEdpdgefseenaelldlldmgeedqGYSQFDQDDLILKQDRAksLLENGQLQESIAMLEEIISDYPEFWSAYNNLA 194
Cdd:TIGR02917 724 QAYRK------------------------ALKRAPSSQNAIKLHRA--LLASGNTAEAVKTLEAWLKTHPNDAVLRTALA 777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 195 LAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHyERRDDKVEALSE----QLSNIYPMLfeqrYKLGATLALVGR 270
Cdd:TIGR02917 778 ELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYL-ELKDPRALEYAEralkLAPNIPAIL----DTLGWLLVEKGE 852
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 489277918 271 YDLGFKWL-KSLYRMgfEGDETFYYWLACSAYYTGRVQFAR 310
Cdd:TIGR02917 853 ADRALPLLrKAVNIA--PEAAAIRYHLALALLATGRKAEAR 891
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
28-122 |
1.03e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 41.52 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 28 GLKAYRERNLSRASKLIQRAIFLEPENTGMLSQLAVIYTEMGFYQQSNELLDFILKnINEKMTECYYFKANNYAHLGLFQ 107
Cdd:COG3914 119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALE-LDPDNAEALNNLGNALQDLGRLE 197
|
90
....*....|....*
gi 489277918 108 EAYKAAETYLKEDPD 122
Cdd:COG3914 198 EAIAAYRRALELDPD 212
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
19-122 |
1.16e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 39.40 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 19 QDGQYFYHKGLKAYRERNLSRASKLIQRAIFLEPENTGMLSQLAVIYTEMGFYQQSNELLDFILKnINEKMTECYYFKAN 98
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALE-LDPDEPEARLNLGL 80
|
90 100
....*....|....*....|....
gi 489277918 99 NYAHLGLFQEAYKAAETYLKEDPD 122
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPE 104
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
160-252 |
1.17e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.22 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 160 AKSLLENGQLQESIAMLEEIISDYPEFWSAYNNLALAYFYAGDVQKAKTTVFTVLEKSHGNLHALCNLLIFYHYERRDDK 239
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90
....*....|...
gi 489277918 240 VEALSEQLSNIYP 252
Cdd:COG4235 104 AIAAWQKLLALLP 116
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
163-256 |
2.18e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.46 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 163 LLENGQLQESIAMLEEIISDYPEFWSAYNNLALAYFYAGDVQKAKtTVFTVLEKSHGNLHALCNLLIFYHYERRDDKVEA 242
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|....
gi 489277918 243 LSEQLSNIYPMLFE 256
Cdd:COG3063 81 YLERALELDPSALR 94
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
31-122 |
3.49e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 36.69 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 31 AYRERNLSRASKLIQRAIFLEPENTGMLSQLAVIYTEMGFYQQSNELLDFIlkNINEKMTECYYFKANNYAHLGLFQEAY 110
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKAL--KLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 489277918 111 KAAETYLKEDPD 122
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
31-150 |
7.43e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 37.97 E-value: 7.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489277918 31 AYRERNLSRASKLIQRAIFLEPENTGMLSQLAVIYTEMGFYQQSNELLDFILKnINEKMTECYYFKANNYAHLGLFQEAY 110
Cdd:COG4785 49 AAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALE-LDPDLAEAYNNRGLAYLLLGDYDAAL 127
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 489277918 111 KAAETYLKEDPDGEFSEENAELLdLLDMGEEDQGYSQFDQ 150
Cdd:COG4785 128 EDFDRALELDPDYAYAYLNRGIA-LYYLGRYELAIADLEK 166
|
|
|