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Conserved domains on  [gi|489302987|ref|WP_003210442|]
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MULTISPECIES: LPS export ABC transporter permease LptF [Pseudomonas]

Protein Classification

LPS export ABC transporter permease LptF( domain architecture ID 10025153)

LPS export ABC transporter permease LptF is part of the ABC transporter complex LptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LptF_YjgP TIGR04407
LPS export ABC transporter permease LptF; Members of this family are LptF, one of homologous, ...
3-352 6.08e-128

LPS export ABC transporter permease LptF; Members of this family are LptF, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptG (TIGR04408). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]


:

Pssm-ID: 275200  Cd Length: 346  Bit Score: 371.13  E-value: 6.08e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987    3 VFRYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAASGALDPGSLFLIMGFRLPGFLQLILPLGLFLGILLAYGRLYLE 82
Cdd:TIGR04407   1 IDRYLFRELLKSFLAVLLVLLLIFLSNQLIRLLGDAADGGIPADVVLSLLGLSLPSFLPLILPLALFLAVLLTLGRLYRD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987   83 SEMTVLSATGMSQQRLLAMTMVPATGIALVVAWLSLSLAPQGAMQFQLVLNKQDAMTEFDTLEPGRFQALNDGTRVTYTE 162
Cdd:TIGR04407  81 SEMVVLFASGISLGRLLRPVLVFALPVALLVALLSLWLAPWANQQFKQLLAEAKARALLSLLQPGRFQELGNGGRVLYVE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987  163 QMSDDRANLGGVFISQknlgQNQKDRgISILVADKGRQEVRPDGSRYLILEDGYRYDGSPGQADYRAIKYDTYGVMLARP 242
Cdd:TIGR04407 161 GIDDDGGVLRNVFIAD----RRDPGR-PSVITARRGTIETDPDGDRFLVLENGRRYEGDPGTADYRITEFDRYGIRLGEQ 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987  243 DVSDEVTDR-DAIPTPDLIGSKELRSIAELQWRISLPLLVFIVTLMAVPLSRVNPRQGRFLKLLPAILLYMAYLTILISA 321
Cdd:TIGR04407 236 TPARSPNRRpKAMPTAELLASDNPEARAELHWRISLPLAVLLLALLAVPLSRVNPRQGRFAKLLPALLLYLIYFNLLSLG 315
                         330       340       350
                  ....*....|....*....|....*....|.
gi 489302987  322 RGSLEKGKLPPALGLWWVHGVFLAIGLGLLY 352
Cdd:TIGR04407 316 RSWVEDGKIPPWLGLWLVHLVFLLLAILLLA 346
 
Name Accession Description Interval E-value
LptF_YjgP TIGR04407
LPS export ABC transporter permease LptF; Members of this family are LptF, one of homologous, ...
3-352 6.08e-128

LPS export ABC transporter permease LptF; Members of this family are LptF, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptG (TIGR04408). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]


Pssm-ID: 275200  Cd Length: 346  Bit Score: 371.13  E-value: 6.08e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987    3 VFRYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAASGALDPGSLFLIMGFRLPGFLQLILPLGLFLGILLAYGRLYLE 82
Cdd:TIGR04407   1 IDRYLFRELLKSFLAVLLVLLLIFLSNQLIRLLGDAADGGIPADVVLSLLGLSLPSFLPLILPLALFLAVLLTLGRLYRD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987   83 SEMTVLSATGMSQQRLLAMTMVPATGIALVVAWLSLSLAPQGAMQFQLVLNKQDAMTEFDTLEPGRFQALNDGTRVTYTE 162
Cdd:TIGR04407  81 SEMVVLFASGISLGRLLRPVLVFALPVALLVALLSLWLAPWANQQFKQLLAEAKARALLSLLQPGRFQELGNGGRVLYVE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987  163 QMSDDRANLGGVFISQknlgQNQKDRgISILVADKGRQEVRPDGSRYLILEDGYRYDGSPGQADYRAIKYDTYGVMLARP 242
Cdd:TIGR04407 161 GIDDDGGVLRNVFIAD----RRDPGR-PSVITARRGTIETDPDGDRFLVLENGRRYEGDPGTADYRITEFDRYGIRLGEQ 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987  243 DVSDEVTDR-DAIPTPDLIGSKELRSIAELQWRISLPLLVFIVTLMAVPLSRVNPRQGRFLKLLPAILLYMAYLTILISA 321
Cdd:TIGR04407 236 TPARSPNRRpKAMPTAELLASDNPEARAELHWRISLPLAVLLLALLAVPLSRVNPRQGRFAKLLPALLLYLIYFNLLSLG 315
                         330       340       350
                  ....*....|....*....|....*....|.
gi 489302987  322 RGSLEKGKLPPALGLWWVHGVFLAIGLGLLY 352
Cdd:TIGR04407 316 RSWVEDGKIPPWLGLWLVHLVFLLLAILLLA 346
LptF COG0795
Lipopolysaccharide export LptBFGC system, permease protein LptF [Cell wall/membrane/envelope ...
1-353 1.42e-85

Lipopolysaccharide export LptBFGC system, permease protein LptF [Cell wall/membrane/envelope biogenesis, Cell motility];


Pssm-ID: 440558  Cd Length: 357  Bit Score: 263.30  E-value: 1.42e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987   1 MIVFRYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAASGALDPGSLFLIMGFRLPGFLQLILPLGLFLGILLAYGRLY 80
Cdd:COG0795    2 KILDRYLLREFLKTFLAVLLVLLALFVLIDLVELLDDAAEGGLPLGLVLLYLLLRLPYFLYLLLPLALLLAVLLTLGRLA 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987  81 LESEMTVLSATGMSQQRLLAMTMVPATGIALVVAWLSLSLAPQGAMQFQLVLNKQDAMTEFDTLEPGRFQAlNDGTRVTY 160
Cdd:COG0795   82 RDSELVALRASGVSLWRLLRPVLILALLLALLTFLLSEYVAPWANQQAEELRAEALSRSDLSLLKPGLFLR-DDGNRVIY 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987 161 TEQMSDDRANLGGVFISQknlgQNQKDRGISILVADKGRQEvrpdGSRYLILEDGYRYDGSPGQaDYRAIKYDTYGVMLA 240
Cdd:COG0795  161 AESVDPDGKTLRNVFIYE----FDDDGRLTSIITAESARFE----DDGSWRLEDGTRYELDPDG-DFRVTRFDEYDLPLP 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987 241 RP--DVSDEVTDRDAIPTPDLI---------GSKELRSIAELQWRISLPLLVFIVTLMAVPLSRVNPRQ-GRFLKLLPAI 308
Cdd:COG0795  232 LTpeDLAVLLKKPEELSTSELLeyieylkrsGLDAPRYRAELHWRLALPLAALVMALLAVPLSLRPPRSgGRGLRLLIGI 311
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 489302987 309 LLYMAYLTILISARGSLEKGKLPPALGLWWVHGVFLAIGLGLLYW 353
Cdd:COG0795  312 LLGFLYYLLLSLAGSLGESGKLPPLLAAWLPNLLFLLLGLYLLLR 356
LptF_LptG pfam03739
Lipopolysaccharide export system permease LptF/LptG; Members of this family are predicted ...
5-352 2.51e-63

Lipopolysaccharide export system permease LptF/LptG; Members of this family are predicted integral membrane proteins of about 350 amino acids long and containing about 6 trans-membrane regions. characterized members include LptF and LptG, two homologous tandem-encoded permeases of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria.


Pssm-ID: 427477  Cd Length: 352  Bit Score: 205.98  E-value: 2.51e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987    5 RYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAASGALDPGSLFLIMGFRLPGFLQLILPLGLFLGILLAYGRLYLESE 84
Cdd:pfam03739   1 RYILREFLKPFLVVLLVLLGLFLLIDLLELLDLILSKGVPIADILRLLLLLIPKILVLILPLALLLAVLLTLGRLARDSE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987   85 MTVLSATGMSQQRLLAMTMVPATGIALVVAWLSLSLAPQGAMQFQLVLNKQDAMTEFDTLEPGRFQALNDGtRVTYTEQM 164
Cdd:pfam03739  81 LTALRAAGISLLRILRPVLILALLLSLLSFILNEYLVPRANAKARKLLAEALSKVPSLLLQPGVFLKDGDG-LIIYVGRI 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987  165 SDDRANLGGVFISQKnlgqNQKDRGISILVADKGRQEvrpDGSRYLILEDGYRYDGSPGQADYRAIKYDTYGVMLARP-- 242
Cdd:pfam03739 160 DPDGNKLEGVFIYDF----DRDGGLSSIITAKSGTID---KEGNRWRLENGNIYRFNKDGKKVSILSFDRYDIDLSLTpk 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987  243 DVSDEVTDRDAIPTPDLI---------GSKELRSIAELQWRISLPLLVFIVTLMAVPLSRVNPRQGRFLKLLPAILLYMA 313
Cdd:pfam03739 233 DLKTLTQDPDELSLSELKeyisrlrasGLDARRYRVELHRRLALPFACLILALLALPLGLSSRRSGRGAGLLIGILLGFL 312
                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 489302987  314 YLTILISARGSLEKGKLPPALGLWWVHGVFLAIGLGLLY 352
Cdd:pfam03739 313 YYVLLSLGKALGENGALPPILAAWLPNLLFLLLGLWLLL 351
 
Name Accession Description Interval E-value
LptF_YjgP TIGR04407
LPS export ABC transporter permease LptF; Members of this family are LptF, one of homologous, ...
3-352 6.08e-128

LPS export ABC transporter permease LptF; Members of this family are LptF, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptG (TIGR04408). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]


Pssm-ID: 275200  Cd Length: 346  Bit Score: 371.13  E-value: 6.08e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987    3 VFRYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAASGALDPGSLFLIMGFRLPGFLQLILPLGLFLGILLAYGRLYLE 82
Cdd:TIGR04407   1 IDRYLFRELLKSFLAVLLVLLLIFLSNQLIRLLGDAADGGIPADVVLSLLGLSLPSFLPLILPLALFLAVLLTLGRLYRD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987   83 SEMTVLSATGMSQQRLLAMTMVPATGIALVVAWLSLSLAPQGAMQFQLVLNKQDAMTEFDTLEPGRFQALNDGTRVTYTE 162
Cdd:TIGR04407  81 SEMVVLFASGISLGRLLRPVLVFALPVALLVALLSLWLAPWANQQFKQLLAEAKARALLSLLQPGRFQELGNGGRVLYVE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987  163 QMSDDRANLGGVFISQknlgQNQKDRgISILVADKGRQEVRPDGSRYLILEDGYRYDGSPGQADYRAIKYDTYGVMLARP 242
Cdd:TIGR04407 161 GIDDDGGVLRNVFIAD----RRDPGR-PSVITARRGTIETDPDGDRFLVLENGRRYEGDPGTADYRITEFDRYGIRLGEQ 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987  243 DVSDEVTDR-DAIPTPDLIGSKELRSIAELQWRISLPLLVFIVTLMAVPLSRVNPRQGRFLKLLPAILLYMAYLTILISA 321
Cdd:TIGR04407 236 TPARSPNRRpKAMPTAELLASDNPEARAELHWRISLPLAVLLLALLAVPLSRVNPRQGRFAKLLPALLLYLIYFNLLSLG 315
                         330       340       350
                  ....*....|....*....|....*....|.
gi 489302987  322 RGSLEKGKLPPALGLWWVHGVFLAIGLGLLY 352
Cdd:TIGR04407 316 RSWVEDGKIPPWLGLWLVHLVFLLLAILLLA 346
LptF COG0795
Lipopolysaccharide export LptBFGC system, permease protein LptF [Cell wall/membrane/envelope ...
1-353 1.42e-85

Lipopolysaccharide export LptBFGC system, permease protein LptF [Cell wall/membrane/envelope biogenesis, Cell motility];


Pssm-ID: 440558  Cd Length: 357  Bit Score: 263.30  E-value: 1.42e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987   1 MIVFRYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAASGALDPGSLFLIMGFRLPGFLQLILPLGLFLGILLAYGRLY 80
Cdd:COG0795    2 KILDRYLLREFLKTFLAVLLVLLALFVLIDLVELLDDAAEGGLPLGLVLLYLLLRLPYFLYLLLPLALLLAVLLTLGRLA 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987  81 LESEMTVLSATGMSQQRLLAMTMVPATGIALVVAWLSLSLAPQGAMQFQLVLNKQDAMTEFDTLEPGRFQAlNDGTRVTY 160
Cdd:COG0795   82 RDSELVALRASGVSLWRLLRPVLILALLLALLTFLLSEYVAPWANQQAEELRAEALSRSDLSLLKPGLFLR-DDGNRVIY 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987 161 TEQMSDDRANLGGVFISQknlgQNQKDRGISILVADKGRQEvrpdGSRYLILEDGYRYDGSPGQaDYRAIKYDTYGVMLA 240
Cdd:COG0795  161 AESVDPDGKTLRNVFIYE----FDDDGRLTSIITAESARFE----DDGSWRLEDGTRYELDPDG-DFRVTRFDEYDLPLP 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987 241 RP--DVSDEVTDRDAIPTPDLI---------GSKELRSIAELQWRISLPLLVFIVTLMAVPLSRVNPRQ-GRFLKLLPAI 308
Cdd:COG0795  232 LTpeDLAVLLKKPEELSTSELLeyieylkrsGLDAPRYRAELHWRLALPLAALVMALLAVPLSLRPPRSgGRGLRLLIGI 311
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 489302987 309 LLYMAYLTILISARGSLEKGKLPPALGLWWVHGVFLAIGLGLLYW 353
Cdd:COG0795  312 LLGFLYYLLLSLAGSLGESGKLPPLLAAWLPNLLFLLLGLYLLLR 356
LptF_LptG pfam03739
Lipopolysaccharide export system permease LptF/LptG; Members of this family are predicted ...
5-352 2.51e-63

Lipopolysaccharide export system permease LptF/LptG; Members of this family are predicted integral membrane proteins of about 350 amino acids long and containing about 6 trans-membrane regions. characterized members include LptF and LptG, two homologous tandem-encoded permeases of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria.


Pssm-ID: 427477  Cd Length: 352  Bit Score: 205.98  E-value: 2.51e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987    5 RYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAASGALDPGSLFLIMGFRLPGFLQLILPLGLFLGILLAYGRLYLESE 84
Cdd:pfam03739   1 RYILREFLKPFLVVLLVLLGLFLLIDLLELLDLILSKGVPIADILRLLLLLIPKILVLILPLALLLAVLLTLGRLARDSE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987   85 MTVLSATGMSQQRLLAMTMVPATGIALVVAWLSLSLAPQGAMQFQLVLNKQDAMTEFDTLEPGRFQALNDGtRVTYTEQM 164
Cdd:pfam03739  81 LTALRAAGISLLRILRPVLILALLLSLLSFILNEYLVPRANAKARKLLAEALSKVPSLLLQPGVFLKDGDG-LIIYVGRI 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987  165 SDDRANLGGVFISQKnlgqNQKDRGISILVADKGRQEvrpDGSRYLILEDGYRYDGSPGQADYRAIKYDTYGVMLARP-- 242
Cdd:pfam03739 160 DPDGNKLEGVFIYDF----DRDGGLSSIITAKSGTID---KEGNRWRLENGNIYRFNKDGKKVSILSFDRYDIDLSLTpk 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489302987  243 DVSDEVTDRDAIPTPDLI---------GSKELRSIAELQWRISLPLLVFIVTLMAVPLSRVNPRQGRFLKLLPAILLYMA 313
Cdd:pfam03739 233 DLKTLTQDPDELSLSELKeyisrlrasGLDARRYRVELHRRLALPFACLILALLALPLGLSSRRSGRGAGLLIGILLGFL 312
                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 489302987  314 YLTILISARGSLEKGKLPPALGLWWVHGVFLAIGLGLLY 352
Cdd:pfam03739 313 YYVLLSLGKALGENGALPPILAAWLPNLLFLLLGLWLLL 351
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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