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Conserved domains on  [gi|489306237|ref|WP_003213675|]
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ArpU family phage packaging/lysis transcriptional regulator [Bacillus pumilus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
phage_arpU super family cl11765
phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, ...
 8-127 1.01e-17

phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]


The actual alignment was detected with superfamily member TIGR01637:

Pssm-ID: 273725  Cd Length: 132  Bit Score: 73.20  E-value: 1.01e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306237    8 LLPGIDEKQVRNALIKELKVYRALKVLEENRKEQ--------EANGATGLFPSLRNQEVLNELKVRQIERAL----KNSL 75
Cdd:TIGR01637   1 LFPEIDEKKTRANVKRFLEDYRRLRRIAGRSLTPklspslslEPPSFTNEFHSKTEEAAIHNLDAEQEARAIvnaiVNQL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 489306237   76 DEVEQDIIRMKYLTSRFVKDLEICEELGLKKDRYYRLKKQATFNLSTALGII 127
Cdd:TIGR01637  81 DEISRQILYDKYLEPDQKYDYQIMMELGYSHRQYYRIKKRALLRFATLYGIG 132
 
Name Accession Description Interval E-value
phage_arpU TIGR01637
phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, ...
 8-127 1.01e-17

phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]


Pssm-ID: 273725  Cd Length: 132  Bit Score: 73.20  E-value: 1.01e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306237    8 LLPGIDEKQVRNALIKELKVYRALKVLEENRKEQ--------EANGATGLFPSLRNQEVLNELKVRQIERAL----KNSL 75
Cdd:TIGR01637   1 LFPEIDEKKTRANVKRFLEDYRRLRRIAGRSLTPklspslslEPPSFTNEFHSKTEEAAIHNLDAEQEARAIvnaiVNQL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 489306237   76 DEVEQDIIRMKYLTSRFVKDLEICEELGLKKDRYYRLKKQATFNLSTALGII 127
Cdd:TIGR01637  81 DEISRQILYDKYLEPDQKYDYQIMMELGYSHRQYYRIKKRALLRFATLYGIG 132
 
Name Accession Description Interval E-value
phage_arpU TIGR01637
phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, ...
 8-127 1.01e-17

phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]


Pssm-ID: 273725  Cd Length: 132  Bit Score: 73.20  E-value: 1.01e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306237    8 LLPGIDEKQVRNALIKELKVYRALKVLEENRKEQ--------EANGATGLFPSLRNQEVLNELKVRQIERAL----KNSL 75
Cdd:TIGR01637   1 LFPEIDEKKTRANVKRFLEDYRRLRRIAGRSLTPklspslslEPPSFTNEFHSKTEEAAIHNLDAEQEARAIvnaiVNQL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 489306237   76 DEVEQDIIRMKYLTSRFVKDLEICEELGLKKDRYYRLKKQATFNLSTALGII 127
Cdd:TIGR01637  81 DEISRQILYDKYLEPDQKYDYQIMMELGYSHRQYYRIKKRALLRFATLYGIG 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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