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Conserved domains on  [gi|489306281|ref|WP_003213719|]
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MULTISPECIES: flagellar hook-associated protein FlgL [Bacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgL super family cl32239
flagellar hook-associated protein FlgL; Validated
 1-303 1.12e-143

flagellar hook-associated protein FlgL; Validated


The actual alignment was detected with superfamily member PRK07701:

Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 406.30  E-value: 1.12e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSV 80
Cdd:PRK07701   1 MRVTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  81 TEIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMNTQMLGKFVFNGTNTNVKPVVENADgtftfNFENY 160
Cdd:PRK07701  81 DQATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIANTQYNGRYIFNGTKTDTPPVTDDGD-----NIENS 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 161 TDANSVKSNISDGITLNVNSNPISAFGGQTASGQNVIEMLTDLENSLKNGTFANSDDALGSIDQFKEVMSAERSDLGARS 240
Cdd:PRK07701 156 TDSGDIEFEIAKGNTINVNVPGDKAFGGQSGGGSNLFEMLDNLENALDSGDTQGVSNLLSDIDQHIDNVLAVRAELGARS 235

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489306281 241 NRVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKVIQPSLVDFLR 303
Cdd:PRK07701 236 NRLELIENRLSDQEVNATKLLSDNEDVDLAEVITDLKTQENVYRAALAVGARIIQPSLVDFLR 298
 
Name Accession Description Interval E-value
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 1-303 1.12e-143

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 406.30  E-value: 1.12e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSV 80
Cdd:PRK07701   1 MRVTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  81 TEIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMNTQMLGKFVFNGTNTNVKPVVENADgtftfNFENY 160
Cdd:PRK07701  81 DQATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIANTQYNGRYIFNGTKTDTPPVTDDGD-----NIENS 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 161 TDANSVKSNISDGITLNVNSNPISAFGGQTASGQNVIEMLTDLENSLKNGTFANSDDALGSIDQFKEVMSAERSDLGARS 240
Cdd:PRK07701 156 TDSGDIEFEIAKGNTINVNVPGDKAFGGQSGGGSNLFEMLDNLENALDSGDTQGVSNLLSDIDQHIDNVLAVRAELGARS 235

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489306281 241 NRVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKVIQPSLVDFLR 303
Cdd:PRK07701 236 NRLELIENRLSDQEVNATKLLSDNEDVDLAEVITDLKTQENVYRAALAVGARIIQPSLVDFLR 298
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 2-302 3.55e-73

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 227.23  E-value: 3.55e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281    2 RVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSVT 81
Cdd:TIGR02550   1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   82 EIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMNTQML-GKFVFNGTNTNVKPVVENADGTFTFNFENY 160
Cdd:TIGR02550  81 SVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGnGRYIFSGTKTDTPPFSEDEGGEVTYNGDGG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  161 TDANSVKSNISDGITLNVNSNPISAFGGQT---ASGQNVIEMLTDLENSLKNG-TFANSDDALGSIDQFKEVMSAERSDL 236
Cdd:TIGR02550 161 QRKVQVASNRSMPIGHPGDKVFMSIPNNDKsvfSTGDDLIDALKKLEDALSSGdAKAALSASLNDLDKALDNVLSARAEV 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489306281  237 GARSNRVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKVIQPSLVDFL 302
Cdd:TIGR02550 241 GARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQLSLFDYL 306
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-303 1.27e-54

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 177.75  E-value: 1.27e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSV 80
Cdd:COG1344    1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  81 TEIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMNTQML-GKFVFNGTNTNVKPVVENADGtftfnfen 159
Cdd:COG1344   81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFnGRYLFAGTATDTPPFQVDYQG-------- 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 160 ytDANSVKSnisdgitlnvnsnpisafggqtasgqnvieMLTDLENSLKNgtfansddalgsidqfkevMSAERSDLGAR 239
Cdd:COG1344  153 --DAGQRTA------------------------------ALGALDAALDN-------------------VSSARAELGAR 181

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489306281 240 SNRVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKVIQPSLVDFLR 303
Cdd:COG1344  182 QNRLESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQLSLLDLLR 245
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 7-140 4.71e-15

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 70.83  E-value: 4.71e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281    7 MISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSVTEIIDI 86
Cdd:pfam00669   5 SAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSEVTDI 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 489306281   87 MSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMN-TQMLGKFVFNGTNT 140
Cdd:pfam00669  85 LQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANtTSFNGEYLLAGINT 139
 
Name Accession Description Interval E-value
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 1-303 1.12e-143

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 406.30  E-value: 1.12e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSV 80
Cdd:PRK07701   1 MRVTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  81 TEIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMNTQMLGKFVFNGTNTNVKPVVENADgtftfNFENY 160
Cdd:PRK07701  81 DQATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIANTQYNGRYIFNGTKTDTPPVTDDGD-----NIENS 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 161 TDANSVKSNISDGITLNVNSNPISAFGGQTASGQNVIEMLTDLENSLKNGTFANSDDALGSIDQFKEVMSAERSDLGARS 240
Cdd:PRK07701 156 TDSGDIEFEIAKGNTINVNVPGDKAFGGQSGGGSNLFEMLDNLENALDSGDTQGVSNLLSDIDQHIDNVLAVRAELGARS 235

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489306281 241 NRVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKVIQPSLVDFLR 303
Cdd:PRK07701 236 NRLELIENRLSDQEVNATKLLSDNEDVDLAEVITDLKTQENVYRAALAVGARIIQPSLVDFLR 298
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 2-302 3.55e-73

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 227.23  E-value: 3.55e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281    2 RVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSVT 81
Cdd:TIGR02550   1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   82 EIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMNTQML-GKFVFNGTNTNVKPVVENADGTFTFNFENY 160
Cdd:TIGR02550  81 SVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGnGRYIFSGTKTDTPPFSEDEGGEVTYNGDGG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  161 TDANSVKSNISDGITLNVNSNPISAFGGQT---ASGQNVIEMLTDLENSLKNG-TFANSDDALGSIDQFKEVMSAERSDL 236
Cdd:TIGR02550 161 QRKVQVASNRSMPIGHPGDKVFMSIPNNDKsvfSTGDDLIDALKKLEDALSSGdAKAALSASLNDLDKALDNVLSARAEV 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489306281  237 GARSNRVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKVIQPSLVDFL 302
Cdd:TIGR02550 241 GARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQLSLFDYL 306
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-303 1.27e-54

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 177.75  E-value: 1.27e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSV 80
Cdd:COG1344    1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  81 TEIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMNTQML-GKFVFNGTNTNVKPVVENADGtftfnfen 159
Cdd:COG1344   81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFnGRYLFAGTATDTPPFQVDYQG-------- 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 160 ytDANSVKSnisdgitlnvnsnpisafggqtasgqnvieMLTDLENSLKNgtfansddalgsidqfkevMSAERSDLGAR 239
Cdd:COG1344  153 --DAGQRTA------------------------------ALGALDAALDN-------------------VSSARAELGAR 181

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489306281 240 SNRVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKVIQPSLVDFLR 303
Cdd:COG1344  182 QNRLESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQLSLLDLLR 245
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 1-302 1.87e-41

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 145.55  E-value: 1.87e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSV 80
Cdd:PRK07192   1 MRISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDPIASARLLELSREQSNNSQYADNIANLSNSLNNQEGHL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  81 TEIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMNTQ-MLGKFVFNGTNTNVKPVVENADGTfTFNFEN 159
Cdd:PRK07192  81 SGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKdSEGNYLFSGTASNTQPITFDAAGG-TYTYNG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 160 YTDANSVKsnISDGITLNVNSNPISAFGGQTASGQNVI-EMLTDLENSLKNGTFANS----DDALGSIDQFKEVMSAERS 234
Cdd:PRK07192 160 NSDQRQVQ--VGEGVQMPVNVTGQSVFQGGGLDVFNTLdKLIDLLETPALPAADAALtaavDEALGAIDDALDNVLTVRT 237

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489306281 235 DLGARSNRVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKVIQPSLVDFL 302
Cdd:PRK07192 238 ELGSRQNELDLLDGNHEDRKLQYQKILSDLQDLDYAEALSDLSNQMAALEAAQKTFVKINSLSLFNLI 305
PRK06663 PRK06663
flagellar hook-associated protein 3;
1-303 1.78e-33

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 126.72  E-value: 1.78e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSV 80
Cdd:PRK06663   2 MRVSHPMQYNNLKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  81 TEIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMNTQML-GKFVFNGTNT----------NVKPVVENA 149
Cdd:PRK06663  82 QSITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANARGAdGYSIFSGTKIdtepfevirgNIKGLQGDA 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 150 DGTFTFNFENYTDANSVKSNISDGITLNVNSNPISAFGGQ---------------------------------------- 189
Cdd:PRK06663 162 GSNQIIGVEYNGDIGEQNREIENGIYIPVNYPGNKVFWGTnqsiissvdasgyvvkedqkiyidgveihlsagdtiddii 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 190 ---------------------------------------------------------------TASGQNVIEMLTDLENS 206
Cdd:PRK06663 242 akindssapvkasldpvlnsislktttphqiwledeeggtvlqdlglitnatkeppynysnsaEVSGRSIFDSLIQLRDA 321

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 207 LKNG-TFANSDDALGSIDQFKEVMSAERSDLGARSNRVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRA 285
Cdd:PRK06663 322 LLNNdQELIGGRALGEIDEALDNLLTTLADLGAKENRLDRSYARISKEKLDMTEALSKNEDIDVTEAITNLNMLELAHQA 401

                        410
                 ....*....|....*...
gi 489306281 286 ALATTAKVIQPSLVDFLR 303
Cdd:PRK06663 402 SLGVSGKIMQPTLLDFLR 419
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 1-302 4.56e-29

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 114.62  E-value: 4.56e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSV 80
Cdd:PRK08870   1 MRISTAQMYQQSVNSMLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  81 TEIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMNTQ-MLGKFVFNGTNTNVKPVVENADGTFTFNFEN 159
Cdd:PRK08870  81 GSVEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLNLANSKdGSGNYLFAGTQSGTQPFAFDASGNVVYSGDQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 160 YT-------------------------------DANSVKSNISDGITLNVN----------------------------- 179
Cdd:PRK08870 161 GQrqvqvadsvqvatndpgdevfmsvpngggdyVPNANASNTGTGLLGSASitdpsdpvngdtytitftdngaggtntyv 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 180 ----------------SNPISaFGGQT-----------------ASGQNVIEMLTDLENSLKNGTFANSDDALGS----- 221
Cdd:PRK08870 241 tdsstgtvvtaqaydaGQPIN-FNGVEvqisgapaagdsftltpAPQASIFDTLDDAIAALESPVSTPAADAALQnalaq 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 222 ----IDQFKEVMSAERSDLGARSNRVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKVIQPS 297
Cdd:PRK08870 320 alrnLDNALNNVLTARASVGARLNELDSAEAVHEDNKLQNTSALSDLEDLDYASAISEFELQQAALQAAQQAFSKVQSLS 399


                 ....*
gi 489306281 298 LVDFL 302
Cdd:PRK08870 400 LFNYI 404
flgL PRK12717
flagellar hook-associated protein 3;
1-201 2.13e-27

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 111.37  E-value: 2.13e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSV 80
Cdd:PRK12717   1 MRISTSQFYESSAANYQRNYSNLVKTQEQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  81 TEIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMNTQ-MLGKFVFNGTNTNVKPVVENADGTFTFNfen 159
Cdd:PRK12717  81 TSINDTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQLLGLMNSKdANGQYLFAGSKSDTPPYVRNADGTYSYQ--- 157

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 489306281 160 yTDANSVKSNISDGITLNVNSNPISAFGGQTASGQNVIEMLT 201
Cdd:PRK12717 158 -GDQTQLSLQVGDTLNLAANDTGYSAFEQAVNTSRTQTTLTS 198
flgL PRK08073
flagellar hook-associated protein 3;
1-302 3.58e-25

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 101.98  E-value: 3.58e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVT---QGMISQNSLRNISKsyeKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSE 77
Cdd:PRK08073   1 MRVStfqNANWAKNQLMDLNV---QQQYHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLNQTE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  78 TSVTEIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMNTQMLGKFVFNGTNTNVKPVVEnaDGTFTFNF 157
Cdd:PRK08073  78 NTLSGMSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVYLANTKEQGRYVFGGDSAEKKPFTE--DGTYQGGT 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 158 ENytdansVKSNISDGITlnvnsnpISAFGGQTASGQNVIEMLTDLENSLKNGTFANSDDALGSIDQFKEVMSAERSDLG 237
Cdd:PRK08073 156 ED------VNWRLNDGYE-------VKAFRNGEALLTPVINTLKKMVDAMQTGDQKALQPLLEENKKNLDIIINRTTEVG 222

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489306281 238 ARSNRVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKVIQPSLVDFL 302
Cdd:PRK08073 223 GTMNTVETFKTILSEQNLALQENRKEIEDVDLAVAISDLAYINATYEATLKAVSTMSKTSILDYM 287
flgL PRK08027
flagellar hook-filament junction protein FlgL;
1-286 5.67e-18

flagellar hook-filament junction protein FlgL;


Pssm-ID: 181202 [Multi-domain]  Cd Length: 317  Bit Score: 82.49  E-value: 5.67e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSV 80
Cdd:PRK08027   1 MRLSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  81 TEIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMN-TQMLGKFVFNGTNTNVKPVVENAdGTFTFNFEN 159
Cdd:PRK08027  81 SQVTTAIQNAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLNLANtTDGNGRYIFAGYKTDKAPFDEAT-GGYVGGTES 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 160 YT---DANS--VKSNISDGITLNVNSNPISAFGGqTASGQNVIEMLTDLENSLK---NGTFANSDDALGSIDQFKEVM-- 229
Cdd:PRK08027 160 ITqqvDAARsmVIGHTGDQIFDSITSNAVPEPDG-SASETNLFAMLDSAIAALKtpvAGSDADKETAAAALDKTNRGLkn 238

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489306281 230 -----SAERSDLGARSNRVD----LVGSRLTSQfevlKNAKSDNEDVESEKAIIDLLQQETVNRAA 286
Cdd:PRK08027 239 slnnvLTVRAELGTQLNELEsldsLGSDRALGQ----KQQMSDLVDVDWNSAISSYVMQQAALQAS 300
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 7-140 4.71e-15

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 70.83  E-value: 4.71e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281    7 MISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSVTEIIDI 86
Cdd:pfam00669   5 SAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSEVTDI 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 489306281   87 MSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMN-TQMLGKFVFNGTNT 140
Cdd:pfam00669  85 LQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANtTSFNGEYLLAGINT 139
PRK12804 PRK12804
flagellin; Provisional
 1-295 1.30e-14

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 72.72  E-value: 1.30e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSV 80
Cdd:PRK12804   1 MRINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  81 TEIIDIMSNVRDKVLDAAN-GTKQPEDLAAVGVEIGQMKKQIIDAMN-TQMLGKFVFNGTNTNVKPvvenADGTFTFNFE 158
Cdd:PRK12804  81 TETHSILQRVRELVVQAGNtGTQDGTDLGAIQDEIKALVDEIDGISDrTEFNGKKLLDGTFKPAAP----AAGTKSLTFQ 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 159 nytdansVKSNISDGITLNVNSNPISAFG-----GQTASGQNVIEM-LTDLENSLKNGTFAnSDDALGSIDQFKEVMSAE 232
Cdd:PRK12804 157 -------IGANAAQQLSVNIEAMSADALGvkdtdGTLVTGKSVSDIdVTKFANAAAAADGG-FDDQLKIVDGAIKQVSDQ 228

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489306281 233 RSDLGARSNRVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKVIQ 295
Cdd:PRK12804 229 RSKLGAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQ 291
flgL PRK12718
flagellar hook-associated protein FlgL; Provisional
 1-194 2.77e-13

flagellar hook-associated protein FlgL; Provisional


Pssm-ID: 79176 [Multi-domain]  Cd Length: 510  Bit Score: 69.84  E-value: 2.77e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSV 80
Cdd:PRK12718   1 MRLSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLAAALAVNVSQTSSMNSNYDANRKQAEQALGAQTNTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  81 TEIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMN-TQMLGKFVFNGTNTNVKPV-VENADGTFTFNFE 158
Cdd:PRK12718  81 QSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANaTDGNGQYLFSGYKGFTQPYsFDAATGKVTYNGD 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 489306281 159 -----------NYTDANSVKSNISDGITLNVNSNPISAFGGQTASGQ 194
Cdd:PRK12718 161 lgqrgiqvdqsRLMSGGDVGSDIFNSVTSGTLAYIADAGAGNAGTGQ 207
flgL PRK08412
flagellar hook-associated protein FlgL; Validated
 1-197 1.27e-12

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 236261 [Multi-domain]  Cd Length: 827  Bit Score: 68.31  E-value: 1.27e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSV 80
Cdd:PRK08412   1 MRVTFGSKYNQMNNYQNALQNKLNDVNTQIASGLKIQYGYQDSDVYNQNLKLQYEENTLDQGIDVASSAYTFTLNTDKAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  81 TEIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMNTQMLGKFVFNGTNTNVKPVveNADGTFtfnfenY 160
Cdd:PRK08412  81 NEFSKTMEAFKTKLIQAANDVHSETSREAIANDLEALKEHMINLANTSIGGEFLFSGSKVDTKPI--DSNGTY------H 152

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 489306281 161 TDANSVKSNISDGITLNVNSNPISAFGGQTASGQNVI 197
Cdd:PRK08412 153 GNDEDLNALVGSGNLVPYNISGQELFLGKDSDKHKLI 189
PRK12807 PRK12807
flagellin; Provisional
 1-302 5.96e-10

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 59.07  E-value: 5.96e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAavksLQYSTAMFRNDQ----YQKNLNEAQNWIDTS 76
Cdd:PRK12807   1 MRINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAG----LAIATRMRARQSglekASQNTQDGMSLIRTA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  77 ETSVTEIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQI-IDAMNTQMLGKFVFNGTNTNVKPVVENADGTFtf 155
Cdd:PRK12807  77 ESAMNSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIdYIAKNTEFNDKNLLAGTGAVTIGSTSISGAEI-- 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 156 nfeNYTDANSVKSNISDGITLN-VNSNPISAFGgqtasgqnviemltDLENSlKNGTFANSDDALGSIDQFKEVMSAERS 234
Cdd:PRK12807 155 ---SIETLDSSATNQQITIKLAnTTAEKLGIDA--------------TTSNI-SISGAASALAAISALNTALNTVAGNRA 216

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489306281 235 DLGARSNRVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKVIQ-PSLVDFL 302
Cdd:PRK12807 217 TLGATLNRLDRNVENLNNQATNMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQtPQMVSKL 285
PRK12803 PRK12803
flagellin; Provisional
 11-295 9.87e-10

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 58.67  E-value: 9.87e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  11 NSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSVTEIIDIMSNV 90
Cdd:PRK12803  11 NASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLNEVEKVLVRM 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  91 RDKVLDAANGTKQPEDLAAVGVEIGQMKKQI-----------IDAMNTQMLGKFVFNGTNTNVKPVVENADGTFTFNFEN 159
Cdd:PRK12803  91 KELAVQSGNGTYSDADRGSIQIEIEQLTDEInriadqaqynqMHMLSNKSAAQNVRTAEELGMQPAKINTPASLSGSQAS 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 160 YTDANSVKSNISDGITLNV-NSNPISAFGGQTASGQNVIEMLTDLE-----------------NSLKNGTFA-NSDDALG 220
Cdd:PRK12803 171 WTLRVHVGANQDEAIAVNIyAANVANLFSGEGAQQAAPVQEGAQQEgaqaapapaaapaqggvNSPVNVTTTvDANMSLA 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489306281 221 SIDQFKEVMSAERSDLGARSNRVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKVIQ 295
Cdd:PRK12803 251 KIENAIRMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMIAQANQ 325
PRK12802 PRK12802
flagellin; Provisional
 3-299 7.54e-09

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 55.65  E-value: 7.54e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   3 VTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSVTE 82
Cdd:PRK12802   5 VNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEGALQE 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  83 IIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDamntqmlgkfVFNGTNTNVKPVVENADGTFTFNfenyTD 162
Cdd:PRK12802  85 STNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITR----------IATSTTLNGKNLLDGSAGTMTFQ----VG 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 163 ANSVKSN-ISDGITLNVNSNPISAFGGQTASGQNviemltdlenslKNGTFANSDDALGSIDQFKEVMSAERSDLGARSN 241
Cdd:PRK12802 151 ANTGQSNqITFGLSASFDATGLGVGSGTLITGAD------------SAAAETNAQAAITAIDAALQTINTTRADLGAAQN 218

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 489306281 242 RVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKVIQ-PSLV 299
Cdd:PRK12802 219 RLQSTISNLQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQlPSAV 277
flgL PRK06008
flagellar hook-associated family protein;
10-302 1.59e-08

flagellar hook-associated family protein;


Pssm-ID: 235669 [Multi-domain]  Cd Length: 348  Bit Score: 55.01  E-value: 1.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  10 QNSLRN-ISKSYEKLSKINEQAQTGRRFtktsdDPVAAVKSLQYSTAMFRND----QYQKNLNE-AQNWIDTSETSVTEI 83
Cdd:PRK06008  12 QNALRLtIAKLQAELSKAQTEATTGRYA-----DVGLSLGSKTARSVSLRREydrlASLTDSNSlVTQRLTATQTALGQI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  84 IDIMSNVRDKVLDAANGTkqpEDLAAVGVEIGQMKKQIIDAMNTQMLGKFVFNGTNTNVKPVVENADGT----------- 152
Cdd:PRK06008  87 IEAAQSFLNDLLAANSSA---QTAATVAQSARSALSSLTSTLNTSVNGEYLFAGINTDVKPLTDYGAPGsaaktavdtaf 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 153 ---FTFNFENYTDANSVKSNISDGITlnvnsNPISA-FGG-------QTASGQN---------VIE-------------- 198
Cdd:PRK06008 164 qtyFGFAPGDPAVSNITAAQMQDFLD-----GTFAPlFSDanwsanwSSASDTNmtsrispteTAEtstsanaegfrkla 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 199 ----MLTDLENS-LKNGTF-ANSDDALGSIDQFKEVMSAERSDLGARSNRVDLVGSRLTSQFEVLKNAKSDNEDVESEKA 272
Cdd:PRK06008 239 mayvMVSELGDIgLSSEAQdTVTDKAITYTGQAISGLTTEQSQLGLAQSRVTKANTRLDAQIKLLNGQILDLEGVDPYEA 318

                        330       340       350
                 ....*....|....*....|....*....|....
gi 489306281 273 ---IIDLLQQ-ETvnraALATTAKVIQPSLVDFL 302
Cdd:PRK06008 319 strVNALQTQlET----SYSLTSQLQQLSLVNYL 348
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
1-150 2.71e-07

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 51.89  E-value: 2.71e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSV 80
Cdd:PRK14692   1 MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKAL 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  81 TEIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMNTQMLGKFVFNGTNTNVKPVVENAD 150
Cdd:PRK14692  81 QDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGN 150
flgL PRK08913
flagellin;
1-302 8.36e-05

flagellin;


Pssm-ID: 236349 [Multi-domain]  Cd Length: 301  Bit Score: 43.62  E-value: 8.36e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVTQGMISQNSLRNISKSYEKLSKINEQAQTGrrfTKTSD-----DPVAAVKSLQYSTAmfRNDQYQKNLNEAQNWIDT 75
Cdd:PRK08913   3 MRVATFANSSQLIAAALRTQQTMASLQIQESSG---LKSESfaglgADAQQAVNLQVSVT--RAQSYIDAATLAQSKVQV 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  76 SETSVTEIIDIMSNVRDKVLDAANGTKQpeDLAAVGVEIGQMKKQIIDAMNTQMLGKFVFNGTNTNVKPV-----VENAD 150
Cdd:PRK08913  78 MYSAVGQIADLAQQLRSSLSAASTGTST--DATSAAASAQQALTQLATLLNTQYGGQYVFAGADTTTAPVdlssfAAGAD 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 151 GTFTFNFENYTDAN---SVKSNISDGITLNVNSNPiSAFggqtasgQNVIEMLTDLENSlKNGTFANSDDALGSIDQFKE 227
Cdd:PRK08913 156 SASSADTSYYQGDDtltSVRVSATQGVSYGVTADN-SAF-------EQLMRALMLVANS-SSLSSSTLSQALDLASTAVD 226

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489306281 228 VMSAERSDLGARSNRVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKVIQPSLVDFL 302
Cdd:PRK08913 227 DLGDVQSRLGNAASRLTAASSRQTEYKSFAETLLSDLTGVDVAAVTAQLSTYQTQLTASYSAISKMKSLNLASYL 301
PRK12805 PRK12805
FliC/FljB family flagellin;
1-295 1.63e-04

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 42.55  E-value: 1.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281   1 MRVTQGMISQNSLRNISKSYEKLSKINEQAQTGRRFTKTSDDPVAAVKSLQYSTAMFRNDQYQKNLNEAQNWIDTSETSV 80
Cdd:PRK12805   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  81 TEIIDIMSNVRDKVLDAANGTKQPEDLAAVGVEIGQMKKQIIDAMNTQmlgkfvfngTNTNVKPVVENADGTFTFNFENY 160
Cdd:PRK12805  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTT---------NYNNIKLLDQTATGAATQVSIQA 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281 161 TDANSVKSNISDGITLNVNSNPISAFGGQTASGQNVIEMltdlenslknGTFANSDDALGSIDQFKEVMSAERSDLGARS 240
Cdd:PRK12805 152 SDKANDLINIDLFNAKGLSAGTITLGSGSTVAGYSALSV----------ADADSSQEATEAIDELINNISNGRALLGAGM 221

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489306281 241 NRVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKVIQ 295
Cdd:PRK12805 222 SRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQ 276
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 219-302 1.90e-03

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 36.54  E-value: 1.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489306281  219 LGSIDQFKEVMSAERSDLGARSNRVDLVGSRLTSQFEVLKNAKSDNEDVESEKAIIDLLQQETVNRAALATTAKV--IQP 296
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQAnqLPQ 80


                  ....*.
gi 489306281  297 SLVDFL 302
Cdd:pfam00700  81 SLLNLL 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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