|
Name |
Accession |
Description |
Interval |
E-value |
| LutB |
COG1139 |
L-lactate utilization protein LutB, contains a ferredoxin-type domain [Energy production and ... |
1-466 |
0e+00 |
|
L-lactate utilization protein LutB, contains a ferredoxin-type domain [Energy production and conversion];
Pssm-ID: 440754 [Multi-domain] Cd Length: 465 Bit Score: 792.77 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 1 MAmKIGTDAFKERVSQGIDNEFMRGAVSGAQERLRTRRLEAAEELGNWEEWRSLSEEIRQHVLENLDFYLGQLAENVAKR 80
Cdd:COG1139 1 MS-KASSEDFKERAREALADEQLRKALDRATDTLRAKRAKAVAELPDWEALREAARAIKDHALANLDEYLEQFEANATAN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 81 GGHVYFAKTAEEASSYIRDVIQKKNGKKIVKSKSMVTEEINLNEVLEKEGCEVVETDLGEYILQIDdHDPPSHIVAPALH 160
Cdd:COG1139 80 GGHVHWARDAEEANRIVLDIAREKGAKKVVKSKSMVTEEIGLNEALEAAGIEVVETDLGEYIVQLA-GEPPSHIVMPAIH 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 161 KNKEQIRDVFKERLDY-QHTEKPEELVMHARAILRKKFLEADIGITGCNFAIADTGSVSLVTNEGNGRLVSTLPKTQITV 239
Cdd:COG1139 159 KNREQIAELFHEKLGTePLTDDPEELTRAAREHLREKFLEADVGITGANFAVAETGTIVLVTNEGNARLCTTLPKVHIAV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 240 MGMERIVPSFSEFEVLVSMLTRSAVGQRLTSYITALTGPKLEGEVDGPEEFHLVIVDNGRSNILG-TEFQSVLQCIRCAA 318
Cdd:COG1139 239 MGIEKLVPTLEDLEVFLRLLPRSATGQRITTYTSLITGPRRPGEGDGPEEFHLVLLDNGRSAMLAdPEFREALRCIRCGA 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 319 CINVCPVYRHVGGHSYGSIYSGPIGAVLSPLLGGYDDYKELPYASSLCAACSEACPVKIPLHELLLKHRQNIVEkEGRAP 398
Cdd:COG1139 319 CLNVCPVYRRVGGHAYGSVYPGPIGAVLTPLLHGLEKAADLPYASTLCGACTEVCPVKIPIPELLLELRERIVE-EGLTP 397
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489320979 399 ISEKLAMKAFGLGASSLSLYKMGSKWAPAAMTPFTEDEKISKGPGPLKNWTQIRDFPAPHKSRFRDWF 466
Cdd:COG1139 398 PAEKLAMKAWAWVMSNPKLYRLALRLARRALKLLPRGGGIRRLPGPLGGWTKGRDLPAPAKESFRDWW 465
|
|
| TIGR00273 |
TIGR00273 |
iron-sulfur cluster-binding protein; Members of this family have a perfect 4Fe-4S binding ... |
18-455 |
0e+00 |
|
iron-sulfur cluster-binding protein; Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters. [Energy metabolism, Electron transport]
Pssm-ID: 129374 [Multi-domain] Cd Length: 432 Bit Score: 773.66 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 18 IDNEFMRGAVSGAQERLRTRRLEAAEELGNWEEWRSLSEEIRQHVLENLDFYLGQLAENVAKRGGHVYFAKTAEEASSYI 97
Cdd:TIGR00273 1 IKDGILREALRNAQERLRANRKLLVEELGYWEEWRELVKEIKLKVLENLDFYLDQLKENVTQRGGHVYYAKTAEEARKII 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 98 RDVIQKKNGKKIVKSKSMVTEEINLNEVLEKEGCEVVETDLGEYILQIDdHDPPSHIVAPALHKNKEQIRDVFKERLDYQ 177
Cdd:TIGR00273 81 GKVAQEKNGKKVVKSKSMVSEEIGLNEVLEKIGIEVWETDLGELILQLD-GDPPSHIVVPALHKNRQQIGEILKERLGYE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 178 HTEKPEELVMHARAILRKKFLEADIGITGCNFAIADTGSVSLVTNEGNGRLVSTLPKTQITVMGMERIVPSFSEFEVLVS 257
Cdd:TIGR00273 160 GEESPEVLAREARKFMREKFLSADIGISGCNFAIAETGSIFLVENEGNGRLSTTLPKTHIAVMGIEKIVPTFDDELVLKS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 258 MLTRSAVGQRLTSYITALTGPKLEGEVDGPEEFHLVIVDNGRSNILGTEFQSVLQCIRCAACINVCPVYRHVGGHSYGSI 337
Cdd:TIGR00273 240 MLARSAVGTRLTAYINVLTGPRQEGDVDGPEEFHLILLDNGRSNILATEFREVLACIRCGACQNECPVYRHIGGHWYGSI 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 338 YSGPIGAVLSPLLGGYDDYKELPYASSLCAACSEACPVKIPLHELLLKHRQNIVEKeGRAPISEKLAMKAFGLGASSLSL 417
Cdd:TIGR00273 320 YPGPIGAVWSPLLGGYTDYKHLPYLSSLCGACREVCPVKIPLPELIREHRSDKVEK-GRHSGMEKLAMKMFAKMASDGAL 398
|
410 420 430
....*....|....*....|....*....|....*...
gi 489320979 418 YKMGSKWApaamTPFTEDEKISKGPGPLKNWTQIRDFP 455
Cdd:TIGR00273 399 WKFGLKMA----QFFSPLGKLLAPIGPVKEWASVRDLP 432
|
|
| LUD_dom |
pfam02589 |
LUD domain; This entry represents a domain found in lactate utilization proteins B (LutB) and ... |
70-295 |
2.96e-59 |
|
LUD domain; This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterized proteins. LutB and LutC are encoded by th conserved LutABC operon in bacteria. They are involved in lactate utilization and is implicated in the oxidative conversion of L-lactate into pyruvate
Pssm-ID: 426855 Cd Length: 188 Bit Score: 193.21 E-value: 2.96e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 70 LGQLAENVAKRGGHVYFAKTAEEASSYIRDVIQKKNGkkivksksmvteeinlnevlekeGCEVVETDLGEYILqiddhd 149
Cdd:pfam02589 1 LEEFKENLEANGAEVYYAKTAEEALEYILELIKEGGV-----------------------VSEGGSTDLGELGL------ 51
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 150 ppshivAPALHKNKEQIRDVFKErldyqhtekpeELVMHARAILRKKFLEADIGITGCNFAIADTGSVSLVTNEGNGRLV 229
Cdd:pfam02589 52 ------APALHSGRYEVLDLFEE-----------KLTAEAREELREKALTADVGITGANFAIAETGTLVLVDGEGNRRLL 114
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489320979 230 STLPKTQITVMGMERIVPSFSEFEVLVSMLTRSAVGQRLTSYITALTGPKLEGEVD--------GPEEFHLVIV 295
Cdd:pfam02589 115 SFLPKVHIAVVGINKIVPDLEDAVKRLRLAPRNATRQKLTPYITFISGPSRTADIElvlvvgvhGPGELHVILV 188
|
|
| PRK08764 |
PRK08764 |
Rnf electron transport complex subunit RnfB; |
313-380 |
9.07e-04 |
|
Rnf electron transport complex subunit RnfB;
Pssm-ID: 181550 [Multi-domain] Cd Length: 135 Bit Score: 39.52 E-value: 9.07e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489320979 313 CIRCAACINVCPVYRHVGGHSYgsiysgpIGAVLSPLLGGyddykelpyasslCAACSEACPVK-IPLH 380
Cdd:PRK08764 87 CIGCTKCIQACPVDAIVGGAKH-------MHTVIAPLCTG-------------CELCVPACPVDcIELH 135
|
|
| MtMvhB_like |
cd10549 |
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ... |
313-375 |
1.32e-03 |
|
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.
Pssm-ID: 319871 [Multi-domain] Cd Length: 128 Bit Score: 38.92 E-value: 1.32e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489320979 313 CIRCAACINVCPVyrhvgghsyGSIYSGPIGAVLSPLLGGYDDYKELPYAsslCAACSEACPV 375
Cdd:cd10549 42 CVFCGACVEVCPT---------GAIELTPEGKEYVPKEKEAEIDEEKCIG---CGLCVKVCPV 92
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| LutB |
COG1139 |
L-lactate utilization protein LutB, contains a ferredoxin-type domain [Energy production and ... |
1-466 |
0e+00 |
|
L-lactate utilization protein LutB, contains a ferredoxin-type domain [Energy production and conversion];
Pssm-ID: 440754 [Multi-domain] Cd Length: 465 Bit Score: 792.77 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 1 MAmKIGTDAFKERVSQGIDNEFMRGAVSGAQERLRTRRLEAAEELGNWEEWRSLSEEIRQHVLENLDFYLGQLAENVAKR 80
Cdd:COG1139 1 MS-KASSEDFKERAREALADEQLRKALDRATDTLRAKRAKAVAELPDWEALREAARAIKDHALANLDEYLEQFEANATAN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 81 GGHVYFAKTAEEASSYIRDVIQKKNGKKIVKSKSMVTEEINLNEVLEKEGCEVVETDLGEYILQIDdHDPPSHIVAPALH 160
Cdd:COG1139 80 GGHVHWARDAEEANRIVLDIAREKGAKKVVKSKSMVTEEIGLNEALEAAGIEVVETDLGEYIVQLA-GEPPSHIVMPAIH 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 161 KNKEQIRDVFKERLDY-QHTEKPEELVMHARAILRKKFLEADIGITGCNFAIADTGSVSLVTNEGNGRLVSTLPKTQITV 239
Cdd:COG1139 159 KNREQIAELFHEKLGTePLTDDPEELTRAAREHLREKFLEADVGITGANFAVAETGTIVLVTNEGNARLCTTLPKVHIAV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 240 MGMERIVPSFSEFEVLVSMLTRSAVGQRLTSYITALTGPKLEGEVDGPEEFHLVIVDNGRSNILG-TEFQSVLQCIRCAA 318
Cdd:COG1139 239 MGIEKLVPTLEDLEVFLRLLPRSATGQRITTYTSLITGPRRPGEGDGPEEFHLVLLDNGRSAMLAdPEFREALRCIRCGA 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 319 CINVCPVYRHVGGHSYGSIYSGPIGAVLSPLLGGYDDYKELPYASSLCAACSEACPVKIPLHELLLKHRQNIVEkEGRAP 398
Cdd:COG1139 319 CLNVCPVYRRVGGHAYGSVYPGPIGAVLTPLLHGLEKAADLPYASTLCGACTEVCPVKIPIPELLLELRERIVE-EGLTP 397
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489320979 399 ISEKLAMKAFGLGASSLSLYKMGSKWAPAAMTPFTEDEKISKGPGPLKNWTQIRDFPAPHKSRFRDWF 466
Cdd:COG1139 398 PAEKLAMKAWAWVMSNPKLYRLALRLARRALKLLPRGGGIRRLPGPLGGWTKGRDLPAPAKESFRDWW 465
|
|
| TIGR00273 |
TIGR00273 |
iron-sulfur cluster-binding protein; Members of this family have a perfect 4Fe-4S binding ... |
18-455 |
0e+00 |
|
iron-sulfur cluster-binding protein; Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters. [Energy metabolism, Electron transport]
Pssm-ID: 129374 [Multi-domain] Cd Length: 432 Bit Score: 773.66 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 18 IDNEFMRGAVSGAQERLRTRRLEAAEELGNWEEWRSLSEEIRQHVLENLDFYLGQLAENVAKRGGHVYFAKTAEEASSYI 97
Cdd:TIGR00273 1 IKDGILREALRNAQERLRANRKLLVEELGYWEEWRELVKEIKLKVLENLDFYLDQLKENVTQRGGHVYYAKTAEEARKII 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 98 RDVIQKKNGKKIVKSKSMVTEEINLNEVLEKEGCEVVETDLGEYILQIDdHDPPSHIVAPALHKNKEQIRDVFKERLDYQ 177
Cdd:TIGR00273 81 GKVAQEKNGKKVVKSKSMVSEEIGLNEVLEKIGIEVWETDLGELILQLD-GDPPSHIVVPALHKNRQQIGEILKERLGYE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 178 HTEKPEELVMHARAILRKKFLEADIGITGCNFAIADTGSVSLVTNEGNGRLVSTLPKTQITVMGMERIVPSFSEFEVLVS 257
Cdd:TIGR00273 160 GEESPEVLAREARKFMREKFLSADIGISGCNFAIAETGSIFLVENEGNGRLSTTLPKTHIAVMGIEKIVPTFDDELVLKS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 258 MLTRSAVGQRLTSYITALTGPKLEGEVDGPEEFHLVIVDNGRSNILGTEFQSVLQCIRCAACINVCPVYRHVGGHSYGSI 337
Cdd:TIGR00273 240 MLARSAVGTRLTAYINVLTGPRQEGDVDGPEEFHLILLDNGRSNILATEFREVLACIRCGACQNECPVYRHIGGHWYGSI 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 338 YSGPIGAVLSPLLGGYDDYKELPYASSLCAACSEACPVKIPLHELLLKHRQNIVEKeGRAPISEKLAMKAFGLGASSLSL 417
Cdd:TIGR00273 320 YPGPIGAVWSPLLGGYTDYKHLPYLSSLCGACREVCPVKIPLPELIREHRSDKVEK-GRHSGMEKLAMKMFAKMASDGAL 398
|
410 420 430
....*....|....*....|....*....|....*...
gi 489320979 418 YKMGSKWApaamTPFTEDEKISKGPGPLKNWTQIRDFP 455
Cdd:TIGR00273 399 WKFGLKMA----QFFSPLGKLLAPIGPVKEWASVRDLP 432
|
|
| LUD_dom |
pfam02589 |
LUD domain; This entry represents a domain found in lactate utilization proteins B (LutB) and ... |
70-295 |
2.96e-59 |
|
LUD domain; This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterized proteins. LutB and LutC are encoded by th conserved LutABC operon in bacteria. They are involved in lactate utilization and is implicated in the oxidative conversion of L-lactate into pyruvate
Pssm-ID: 426855 Cd Length: 188 Bit Score: 193.21 E-value: 2.96e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 70 LGQLAENVAKRGGHVYFAKTAEEASSYIRDVIQKKNGkkivksksmvteeinlnevlekeGCEVVETDLGEYILqiddhd 149
Cdd:pfam02589 1 LEEFKENLEANGAEVYYAKTAEEALEYILELIKEGGV-----------------------VSEGGSTDLGELGL------ 51
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 150 ppshivAPALHKNKEQIRDVFKErldyqhtekpeELVMHARAILRKKFLEADIGITGCNFAIADTGSVSLVTNEGNGRLV 229
Cdd:pfam02589 52 ------APALHSGRYEVLDLFEE-----------KLTAEAREELREKALTADVGITGANFAIAETGTLVLVDGEGNRRLL 114
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489320979 230 STLPKTQITVMGMERIVPSFSEFEVLVSMLTRSAVGQRLTSYITALTGPKLEGEVD--------GPEEFHLVIV 295
Cdd:pfam02589 115 SFLPKVHIAVVGINKIVPDLEDAVKRLRLAPRNATRQKLTPYITFISGPSRTADIElvlvvgvhGPGELHVILV 188
|
|
| LutB_C |
pfam11870 |
Lactate utilization protein B, C-terminal; This domain is functionally uncharacterized. This ... |
380-470 |
3.53e-22 |
|
Lactate utilization protein B, C-terminal; This domain is functionally uncharacterized. This domain is found at the C-terminal of a family of 4Fe-4S, iron-sulphur cluster binding proteins, including Lactate utilization protein B (LutB). These proteins have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4Fe-4S iron-sulphur clusters. This domain is found in LutB proteins in association with the LUD domain (pfam02589) and usually Fer4_8 (pfam13183). The LutABC operon is involved in lactate-utilization and is essential.
Pssm-ID: 432147 [Multi-domain] Cd Length: 86 Bit Score: 90.42 E-value: 3.53e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 380 HELLLKHRQNIVEKEGRAPISEKLAMKAFGLGASSLSLYKMGSKWAPAAmtpftedekisKGPGP--LKNWTQIRDFPAP 457
Cdd:pfam11870 4 HEPVGQGPGVIKGQGAKRSAAERLAWKGFALAASSPGLYRLGTWLATRF-----------RGLLPskLKAWTRVRTFPKP 72
|
90
....*....|...
gi 489320979 458 HKSRFRDWFADRE 470
Cdd:pfam11870 73 AARSLHDLAKERG 85
|
|
| LutC |
COG1556 |
L-lactate utilization protein LutC, contains LUD domain [Energy production and conversion]; |
33-296 |
7.97e-16 |
|
L-lactate utilization protein LutC, contains LUD domain [Energy production and conversion];
Pssm-ID: 441165 Cd Length: 206 Bit Score: 76.05 E-value: 7.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 33 RLRT---RRLEAAEELGNWEEWRSLSEEIRqhvlenldfyLGQLAENVAKRGGHVYFAKTAEEASSYIRDVIQKKNGKKI 109
Cdd:COG1556 9 RIRAalgRPPPPPLPRGEPPLFRLLSADDL----------VELFVERLEAVGGEVVRVTTEAELPAALAELLAEAGLKRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 110 VksksmvteeinlnevlekegceVVETDLgeyilqiddhdppshivAPALHKNKEQIRDVFKERLdyqhtekpeelvmha 189
Cdd:COG1556 79 V----------------------VPEPGL-----------------PAALQLAWDPLEELEDPAA--------------- 104
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 190 railrkkFLEADIGITGCNFAIADTGSVSLVTNEGNGRLVSTLPKTQITVMGMERIVPSFSEfevlvsMLTRSAVGQRLT 269
Cdd:COG1556 105 -------LEDADVGITGAEFGIAETGTIVLDSGPDQGRALSLLPEHHIVVVPASQIVPTMHE------AYARLREKAGLP 171
|
250 260 270
....*....|....*....|....*....|....*.
gi 489320979 270 SYITALTGP---------KLEGeVDGPEEFHLVIVD 296
Cdd:COG1556 172 RNITFISGPsktadieqtLVLG-AHGPRRLHVILVE 206
|
|
| Fer4_8 |
pfam13183 |
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ... |
312-377 |
1.92e-15 |
|
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Pssm-ID: 433017 [Multi-domain] Cd Length: 64 Bit Score: 70.80 E-value: 1.92e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489320979 312 QCIRCAACINVCPVYRHVGGHSYGSIYSGPIGAVLspLLGGYDDYKELPYASSLCAACSEACPVKI 377
Cdd:pfam13183 1 RCIRCGACLAACPVYLVTGGRFPGDPRGGAAALLG--RLEALEGLAEGLWLCTLCGACTEVCPVGI 64
|
|
| GlpC |
COG0247 |
Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy ... |
310-404 |
1.89e-09 |
|
Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy production and conversion];
Pssm-ID: 440017 [Multi-domain] Cd Length: 420 Bit Score: 59.32 E-value: 1.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 310 VLQCIRCAACINVCPVYRHVGGHSYG---------SIYSGPIGAVLSpllggyDDYKELPYASSLCAACSEACPVKIPLH 380
Cdd:COG0247 77 LDACVGCGFCRAMCPSYKATGDEKDSprgrinllrEVLEGELPLDLS------EEVYEVLDLCLTCKACETACPSGVDIA 150
|
90 100
....*....|....*....|....
gi 489320979 381 ELLLKHRQNIVEkEGRAPISEKLA 404
Cdd:COG0247 151 DLIAEARAQLVE-RGGRPLRDRLL 173
|
|
| Fer4_10 |
pfam13237 |
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to ... |
313-374 |
2.11e-05 |
|
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.
Pssm-ID: 404174 [Multi-domain] Cd Length: 56 Bit Score: 41.85 E-value: 2.11e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489320979 313 CIRCAACINVCPVYRHVGGHSYGSIYSGPIGAVLSPLLGgyddykelpyasslCAACSEACP 374
Cdd:pfam13237 9 CIGCGRCTAACPAGLTRVGAIVERLEGEAVRIGVWKCIG--------------CGACVEACP 56
|
|
| Fer4_17 |
pfam13534 |
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to ... |
313-378 |
4.67e-05 |
|
4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.
Pssm-ID: 433287 [Multi-domain] Cd Length: 61 Bit Score: 41.29 E-value: 4.67e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489320979 313 CIRCAACINVCPVYRHVGGHSYgsiysGPIGAVLSPLLGGYDDYKELpYASSLCAACSEACPVKIP 378
Cdd:pfam13534 2 CIQCGCCVDECPRYLLNGDEPK-----KLMRAAYLGDLEELQANKVA-NLCSECGLCEYACPMGLD 61
|
|
| Fer4_7 |
pfam12838 |
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ... |
313-377 |
2.22e-04 |
|
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Pssm-ID: 463724 [Multi-domain] Cd Length: 51 Bit Score: 39.05 E-value: 2.22e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489320979 313 CIRCAACINVCPVYRhvgghsygsIYSGPIGAVlspllGGYDDYKELPYASSLCAACSEACPVKI 377
Cdd:pfam12838 1 CIGCGACVAACPVGA---------ITLDEVGEK-----KGTKTVVIDPERCVGCGACVAVCPTGA 51
|
|
| Fer4_9 |
pfam13187 |
4Fe-4S dicluster domain; |
312-377 |
3.45e-04 |
|
4Fe-4S dicluster domain;
Pssm-ID: 463801 [Multi-domain] Cd Length: 50 Bit Score: 38.30 E-value: 3.45e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489320979 312 QCIRCAACINVCPVyrhvgghsygsiysgpiGAVLSPLLGGYDDYKELPYASSLCAACSEACPVKI 377
Cdd:pfam13187 1 KCTGCGACVAACPA-----------------GAIVPDLVGQTIRGDIAGLACIGCGACVDACPRGA 49
|
|
| PRK08764 |
PRK08764 |
Rnf electron transport complex subunit RnfB; |
313-380 |
9.07e-04 |
|
Rnf electron transport complex subunit RnfB;
Pssm-ID: 181550 [Multi-domain] Cd Length: 135 Bit Score: 39.52 E-value: 9.07e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489320979 313 CIRCAACINVCPVYRHVGGHSYgsiysgpIGAVLSPLLGGyddykelpyasslCAACSEACPVK-IPLH 380
Cdd:PRK08764 87 CIGCTKCIQACPVDAIVGGAKH-------MHTVIAPLCTG-------------CELCVPACPVDcIELH 135
|
|
| MtMvhB_like |
cd10549 |
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ... |
313-375 |
1.32e-03 |
|
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.
Pssm-ID: 319871 [Multi-domain] Cd Length: 128 Bit Score: 38.92 E-value: 1.32e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489320979 313 CIRCAACINVCPVyrhvgghsyGSIYSGPIGAVLSPLLGGYDDYKELPYAsslCAACSEACPV 375
Cdd:cd10549 42 CVFCGACVEVCPT---------GAIELTPEGKEYVPKEKEAEIDEEKCIG---CGLCVKVCPV 92
|
|
| MtMvhB_like |
cd10549 |
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ... |
312-394 |
1.51e-03 |
|
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.
Pssm-ID: 319871 [Multi-domain] Cd Length: 128 Bit Score: 38.53 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 312 QCIRCAACINVCPVyrhvgghsyGSIYSGPIGAVLSPLlgGYDDYKelpyaSSLCAACSEACPVK-IPLHELLLKHRQNI 390
Cdd:cd10549 7 KCIGCGICVKACPT---------DAIELGPNGAIARGP--EIDEDK-----CVFCGACVEVCPTGaIELTPEGKEYVPKE 70
|
....
gi 489320979 391 VEKE 394
Cdd:cd10549 71 KEAE 74
|
|
| DMSOR_beta-like |
cd04410 |
Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta ... |
313-375 |
1.69e-03 |
|
Beta subunit of the DMSO Reductase (DMSOR) family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.
Pssm-ID: 319870 [Multi-domain] Cd Length: 136 Bit Score: 38.52 E-value: 1.69e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489320979 313 CIRCAACINVCP-VYRHVGGHSYGSIysgpigavlSPLLGGYDDYKELPYASSLC--AACSEACPV 375
Cdd:cd04410 8 CIGCGTCEVACKqEHGLRPGPDWSRI---------KVIEGGGLERAFLPVSCMHCedPPCVKACPT 64
|
|
| Fer4_16 |
pfam13484 |
4Fe-4S double cluster binding domain; |
313-374 |
1.94e-03 |
|
4Fe-4S double cluster binding domain;
Pssm-ID: 463893 [Multi-domain] Cd Length: 65 Bit Score: 36.70 E-value: 1.94e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489320979 313 CIRCAACINVCPVYRHVGGhsygsIYSGPIGAVLSPLLGGYDDYKELPYASSL------CAACSEACP 374
Cdd:pfam13484 1 CGSCGKCIDACPTGAIVGP-----EGVLDARRCISYLTIEKKGLIPDELRCLLgnrcygCDICQDVCP 63
|
|
| PreA |
COG1146 |
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ... |
313-375 |
2.08e-03 |
|
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];
Pssm-ID: 440761 [Multi-domain] Cd Length: 67 Bit Score: 36.61 E-value: 2.08e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489320979 313 CIRCAACINVCPVyrhvgghsygsiysgpigAVLSPLLGGYDDYKELPYASSLCAACSEACPV 375
Cdd:COG1146 10 CIGCGACVEVCPV------------------DVLELDEEGKKALVINPEECIGCGACELVCPV 54
|
|
| DMSOR_beta_like |
cd16373 |
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ... |
313-374 |
3.99e-03 |
|
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.
Pssm-ID: 319895 [Multi-domain] Cd Length: 154 Bit Score: 38.01 E-value: 3.99e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489320979 313 CIRCAACINVCPvyrhvgghsYGSIYSGPIGAVLSPLLGGYDDYKELP-YASslCAACSEACP 374
Cdd:cd16373 16 CIRCGLCVEACP---------TGVIQPAGLEDGLEGGRTPYLDPREGPcDLC--CDACVEVCP 67
|
|
| glpC |
PRK11168 |
anaerobic glycerol-3-phosphate dehydrogenase subunit C; |
312-479 |
4.22e-03 |
|
anaerobic glycerol-3-phosphate dehydrogenase subunit C;
Pssm-ID: 236869 [Multi-domain] Cd Length: 396 Bit Score: 39.47 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 312 QCIRCAACINVCPVYRhVGGHSYGSIYSGPIGAVL---SPLLggYDDykELPYASSlCAACSEACPVKIPLHELLLKHRQ 388
Cdd:PRK11168 8 SCIKCTVCTTACPVAR-VNPLYPGPKQAGPDGERLrlkDGAL--YDE--SLKYCSN-CKRCEVACPSGVKIGDIIQRARA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489320979 389 NIVEKEGrAPISEKLamkafglgassLSLY----KMGSKWAP---AAMtpftedekiskGPGPLKNW-------TQIRDF 454
Cdd:PRK11168 82 KYVTERG-PPLRDRI-----------LSHTdlmgSLATPFAPlvnAAT-----------GLKPVRWLlektlgiDHRRPL 138
|
170 180
....*....|....*....|....*
gi 489320979 455 PAPHKSRFRDWFADRETSERTKEEQ 479
Cdd:PRK11168 139 PKYAFGTFRRWYRKQAAQQAQYKKQ 163
|
|
| NapF |
COG1145 |
Ferredoxin [Energy production and conversion]; |
313-376 |
7.09e-03 |
|
Ferredoxin [Energy production and conversion];
Pssm-ID: 440760 [Multi-domain] Cd Length: 238 Bit Score: 38.17 E-value: 7.09e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489320979 313 CIRCAACINVCPVyrhvgghsyGSIYSGpigavlspllggyDDYKELPYASSLC---AACSEACPVK 376
Cdd:COG1145 184 CIGCGLCVKVCPT---------GAIRLK-------------DGKPQIVVDPDKCigcGACVKVCPVG 228
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