|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15100 |
PRK15100 |
cystine ABC transporter permease; |
2-221 |
2.82e-132 |
|
cystine ABC transporter permease;
Pssm-ID: 185055 [Multi-domain] Cd Length: 220 Bit Score: 371.00 E-value: 2.82e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 2 IESALQLALESAPFLLKGALYTVVLSLGGMFFGLLLGFVLALLRLYAIAPLRWFSRFYVSFFRGTPLLVQLFLIYYGLPQ 81
Cdd:PRK15100 1 MQESIQLVIDSAPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 82 LGIQLDPLPAALIGFSLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKAQTLYRAILPQAARTALPPLGNSFISLVKDT 161
Cdd:PRK15100 81 FGIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDT 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 162 ALAATIQVPELFRQAQLITARTFEIFTMYLAAALIYWALASVLAHFQARLEARVNRHEQD 221
Cdd:PRK15100 161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQLNRQERE 220
|
|
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
6-218 |
2.23e-86 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 254.61 E-value: 2.23e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 6 LQLALESAPFLLKGALYTVVLSLGGMFFGLLLGFVLALLRLYAIAPLRWFSRFYVSFFRGTPLLVQLFLIYYGLPQLGIQ 85
Cdd:COG0765 5 FSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPLLGID 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 86 LDPLPAALIGFSLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKAQTLYRAILPQAARTALPPLGNSFISLVKDTALAA 165
Cdd:COG0765 85 LSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDTSLVS 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 489332446 166 TIQVPELFRQAQLITARTFEIFTMYLAAALIYWALASVLAHFQARLEARVNRH 218
Cdd:COG0765 165 VIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLARG 217
|
|
| ectoine_ehuD |
TIGR03003 |
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ... |
14-214 |
1.31e-39 |
|
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.
Pssm-ID: 132048 [Multi-domain] Cd Length: 212 Bit Score: 135.37 E-value: 1.31e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 14 PFLLKGALYTVVLSLGGMFFGLLLGFVLALLRLYAIAPLRWFSRFYVSFFRGTPLLVQLFLIYYGLPQLGIQLDPLPAAL 93
Cdd:TIGR03003 11 PTLIEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYVLPDIGIRLPALVAGV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 94 IGFSLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKAQTLYRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELF 173
Cdd:TIGR03003 91 LGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITVLELM 170
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 489332446 174 RQAQLITARTFEIFTMYLAAALIYWALASVLAHFQARLEAR 214
Cdd:TIGR03003 171 NQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEAR 211
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
20-204 |
1.80e-18 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 79.63 E-value: 1.80e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 20 ALYTVVLSLGGMFFGLLLGFVLALLRLYAIAPLRWFSRFYVSFFRGTPLLVQLFLIYYGLPQLG---IQLDPLPAALIGF 96
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLgwgILPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 97 SLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKAQTLYRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELFRQA 176
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160
|
170 180
....*....|....*....|....*...
gi 489332446 177 QLITARTFEIFTMYLAAALIYWALASVL 204
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLL 188
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
52-217 |
2.48e-15 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 71.18 E-value: 2.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 52 LRWFSRFYVSFFRGTPLLVQLFLIYYGLPQLGIQLDPLPAaLIGFSLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKA 131
Cdd:pfam00528 16 LDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPA-IILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRW 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 132 QTLYRAILPQAARTALPPLGNSFISLVKDTALAATI----QVPELFRQAQLITaRTFEIFTMYLAAALIYWALASVLAHF 207
Cdd:pfam00528 95 QIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGY-DYPEIQGPVLAAALILLLLNLLVDIL 173
|
170
....*....|
gi 489332446 208 QARLEARVNR 217
Cdd:pfam00528 174 QRLLDPRVRK 183
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15100 |
PRK15100 |
cystine ABC transporter permease; |
2-221 |
2.82e-132 |
|
cystine ABC transporter permease;
Pssm-ID: 185055 [Multi-domain] Cd Length: 220 Bit Score: 371.00 E-value: 2.82e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 2 IESALQLALESAPFLLKGALYTVVLSLGGMFFGLLLGFVLALLRLYAIAPLRWFSRFYVSFFRGTPLLVQLFLIYYGLPQ 81
Cdd:PRK15100 1 MQESIQLVIDSAPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 82 LGIQLDPLPAALIGFSLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKAQTLYRAILPQAARTALPPLGNSFISLVKDT 161
Cdd:PRK15100 81 FGIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDT 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 162 ALAATIQVPELFRQAQLITARTFEIFTMYLAAALIYWALASVLAHFQARLEARVNRHEQD 221
Cdd:PRK15100 161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQLNRQERE 220
|
|
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
6-218 |
2.23e-86 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 254.61 E-value: 2.23e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 6 LQLALESAPFLLKGALYTVVLSLGGMFFGLLLGFVLALLRLYAIAPLRWFSRFYVSFFRGTPLLVQLFLIYYGLPQLGIQ 85
Cdd:COG0765 5 FSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPLLGID 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 86 LDPLPAALIGFSLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKAQTLYRAILPQAARTALPPLGNSFISLVKDTALAA 165
Cdd:COG0765 85 LSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDTSLVS 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 489332446 166 TIQVPELFRQAQLITARTFEIFTMYLAAALIYWALASVLAHFQARLEARVNRH 218
Cdd:COG0765 165 VIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLARG 217
|
|
| ArtM |
COG4160 |
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ... |
6-220 |
1.18e-66 |
|
ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443325 [Multi-domain] Cd Length: 229 Bit Score: 204.94 E-value: 1.18e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 6 LQLALESAPFLLKGALYTVVLSLGGMFFGLLLGFVLALLRLYAIAPLRWFSRFYVSFFRGTPLLVQLFLIYYGLPQL-GI 84
Cdd:COG4160 3 LDLLFEYLPLLLSGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYGLGQFeWV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 85 QL--------DPLPAALIGFSLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKAQTLYRAILPQAARTALPPLGNSFIS 156
Cdd:COG4160 83 REswlwpllrDPWFCALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRRIILPSALRRALPAYSNEVIL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489332446 157 LVKDTALAATIQVPELFRQAQLITARTFEIFTMYLAAALIYWALASVLAHFQARLEARVNRHEQ 220
Cdd:COG4160 163 MLKATALASTITVMDLTGVARRIYSRTYDPFEPFLIAALIYLVITFLLTRLFRLLERRLLRHLR 226
|
|
| ArtQ |
COG4215 |
ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; |
16-220 |
8.71e-53 |
|
ABC-type arginine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443361 [Multi-domain] Cd Length: 238 Bit Score: 169.92 E-value: 8.71e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 16 LLKGALYTVVLSLGGMFFGLLLGFVLALLRLYAIAPLRWFSRFYVSFFRGTPLLVQLFLIYYGLPQL------------G 83
Cdd:COG4215 18 LLAGALVTLELALLSLLLGLVLGLLGALAKLSGNRPLRWLATGYTTVVRGVPDLLLILLLYFGGQILlnaladlfgydgF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 84 IQLDPLPAALIGFSLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKAQTLYRAILPQAARTALPPLGNSFISLVKDTAL 163
Cdd:COG4215 98 IEINPFVAGVLALGFVFGAYATEVFRGAFLAVPKGQIEAARAYGMSRWQVFRRILLPQMWRYALPGLGNNWLVLLKDTAL 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489332446 164 AATIQVPELFRQAQLITARTFEIFTMYLAAALIYWALASVLAHFQARLEARVNRHEQ 220
Cdd:COG4215 178 VSVIGLVDLVRQAQEAAGSTREPFTFYLAAALIYLALTTVSELVLARLERRASRGVR 234
|
|
| ectoine_ehuD |
TIGR03003 |
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ... |
14-214 |
1.31e-39 |
|
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.
Pssm-ID: 132048 [Multi-domain] Cd Length: 212 Bit Score: 135.37 E-value: 1.31e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 14 PFLLKGALYTVVLSLGGMFFGLLLGFVLALLRLYAIAPLRWFSRFYVSFFRGTPLLVQLFLIYYGLPQLGIQLDPLPAAL 93
Cdd:TIGR03003 11 PTLIEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYVLPDIGIRLPALVAGV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 94 IGFSLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKAQTLYRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELF 173
Cdd:TIGR03003 91 LGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITVLELM 170
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 489332446 174 RQAQLITARTFEIFTMYLAAALIYWALASVLAHFQARLEAR 214
Cdd:TIGR03003 171 NQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEAR 211
|
|
| ectoine_ehuC |
TIGR03004 |
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are ... |
14-217 |
2.03e-39 |
|
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.
Pssm-ID: 132049 [Multi-domain] Cd Length: 214 Bit Score: 134.98 E-value: 2.03e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 14 PFLLKGALYTVVLSLGGMFFGLLLGFVLALLRLYAIAPLRWFSRFYVSFFRGTPLLVQLFLIYYGLPQLGIQLDPLPAAL 93
Cdd:TIGR03004 5 PLLLQGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPILRTVALCYIEVFRGTSLLVQLFWFYFVLPLIGLSLDPVTTGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 94 IGFSLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKAQTLYRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELF 173
Cdd:TIGR03004 85 MVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLADLT 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 489332446 174 RQAQLITARTFEIFTMYLAAALIYWALASVLAHFQARLEARVNR 217
Cdd:TIGR03004 165 FAAQSIRNLTLDTLSIFAITLLCYFVMALIIMLIMRVLERVVRR 208
|
|
| glnP |
PRK09494 |
glutamine ABC transporter permease protein; Reviewed |
11-215 |
1.32e-38 |
|
glutamine ABC transporter permease protein; Reviewed
Pssm-ID: 181907 [Multi-domain] Cd Length: 219 Bit Score: 132.87 E-value: 1.32e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 11 ESAPFLLKGALYTVVLSLGGMFFGLLLGFVLALLRLYAIAPLRWFSRFYVSFFRGTPLLVQLFLIYYGLPQL--GIQLDP 88
Cdd:PRK09494 10 PAIPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPMAfnDLRIDP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 89 LPAALIGFSLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKAQTLYRAILPQAARTALPPLGNSFISLVKDTALAATIQ 168
Cdd:PRK09494 90 FTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVIG 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 489332446 169 VPELFRQAQLITARTFEIFTMYLAAALIYWALASVLAHFQARLEARV 215
Cdd:PRK09494 170 VAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRM 216
|
|
| PRK11123 |
PRK11123 |
arginine ABC transporter permease ArtQ; |
16-220 |
4.26e-37 |
|
arginine ABC transporter permease ArtQ;
Pssm-ID: 182979 [Multi-domain] Cd Length: 238 Bit Score: 129.41 E-value: 4.26e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 16 LLKGALYTVVLSLGGMFFGLLLGFVLALLRLYAIAPLRWFSRFYVSFFRGTPLLVQLFLIYYGLPQL------------- 82
Cdd:PRK11123 7 LASAAGMTVGLAVCALIVGLALAMLFAVWESAKWRPVAWPGTALVTLLRGLPEILVVLFIYFGSSQLlltlsdgftlnlg 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 83 -----------GIQLDPLPAALIGFSLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKAQTLYRAILPQAARTALPPLG 151
Cdd:PRK11123 87 fvqipvqmdieNFEVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLG 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489332446 152 NSFISLVKDTALAATIQVPELFRQAQLITARTFEIFTMYLAAALIYWALASVLAHFQARLEARVNRHEQ 220
Cdd:PRK11123 167 NQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIIAAAIYLVITLISQYILKRIELRATRFER 235
|
|
| artM |
PRK11122 |
arginine ABC transporter permease ArtM; |
52-222 |
8.44e-31 |
|
arginine ABC transporter permease ArtM;
Pssm-ID: 182978 [Multi-domain] Cd Length: 222 Bit Score: 112.74 E-value: 8.44e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 52 LRWFSRFYVSFFRGTPLLVQLFLIYYG---------LPQLGIQL-DPLPAALIGFSLNMAAYTSEILRAAIASIDRGQWE 121
Cdd:PRK11122 44 LVWLVRGYITLFTGTPLLVQIFLIYYGpgqfpwlqeYPWLWHLLsQPWLCAMLALALNSAAYSTQLFYGAVRAIPEGQWQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 122 AAASIGMSKAQTLyRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELFRQAQLITARTFEIfTMYLAAALIYWALA 201
Cdd:PRK11122 124 SCAALGMSKKQTL-RILLPYAFKRALSSYSNEVVLVFKSTSLAYTITLMDVMGYSQLLYGRTYDV-MVFGAAGIIYLVVN 201
|
170 180
....*....|....*....|.
gi 489332446 202 SVLAHFQARLEARVNRHEQDN 222
Cdd:PRK11122 202 GLLTLLMRLIERKALAFERRN 222
|
|
| HEQRo_perm_3TM |
TIGR01726 |
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ... |
14-110 |
3.17e-29 |
|
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130787 [Multi-domain] Cd Length: 99 Bit Score: 104.92 E-value: 3.17e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 14 PFLLKGALYTVVLSLGGMFFGLLLGFVLALLRLYAIAPLRWFSRFYVSFFRGTPLLVQLFLIYYGLPQLGIQLDPLPAAL 93
Cdd:TIGR01726 3 PFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLIGIRLSPLTAAV 82
|
90
....*....|....*..
gi 489332446 94 IGFSLNMAAYTSEILRA 110
Cdd:TIGR01726 83 IALTLFYGAYLAEIFRG 99
|
|
| PRK15107 |
PRK15107 |
glutamate/aspartate ABC transporter permease GltK; |
12-201 |
2.16e-28 |
|
glutamate/aspartate ABC transporter permease GltK;
Pssm-ID: 185062 [Multi-domain] Cd Length: 224 Bit Score: 106.45 E-value: 2.16e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 12 SAPFLLKGALYTVVLSLGGMFFGLLLGFVLALLRLYAIAPLRWFSRFYVSFFRGTPLLVQL---FLIYYGLPQLGIQLDP 88
Cdd:PRK15107 12 SLPYLLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAYVNVFRSIPLVMVLlwfYLIVPGFLQNVLGLSP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 89 -----LPAALIGFSLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKAQTLYRAILPQAARTALPPLGNSFISLVKDTAL 163
Cdd:PRK15107 92 ktdirLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSL 171
|
170 180 190
....*....|....*....|....*....|....*...
gi 489332446 164 AATIQVPELFRQAQLITARTFEIFTMYLAAALIYWALA 201
Cdd:PRK15107 172 VYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVIS 209
|
|
| PRK15069 |
PRK15069 |
histidine ABC transporter permease HisM; |
52-218 |
7.86e-27 |
|
histidine ABC transporter permease HisM;
Pssm-ID: 185029 [Multi-domain] Cd Length: 234 Bit Score: 102.82 E-value: 7.86e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 52 LRWFSRFYVSFFRGTPLLVQLFLIYYGLPQLGI----QL------DPLPAALIGFSLNMAAYTSEILRAAIASIDRGQWE 121
Cdd:PRK15069 55 IRFPVWLYTYVFRGTPLYVQLLVFYTGMYSLEIvrgtDLldaffrSGLNCTILAFTLNTCAYTTEIFAGAIRSVPHGEIE 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 122 AAASIGMSKAQTLYRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELFRQAQLITARTFEIFTMYLAAALIYWALA 201
Cdd:PRK15069 135 AARAYGMSTFKLYRRIILPSALRRALPAYSNEVILMLHATTLAFTATVPDILKIARDINSATYQPFQAFGIAAVLYLIIS 214
|
170
....*....|....*..
gi 489332446 202 SVLAHFQARLEARVNRH 218
Cdd:PRK15069 215 FVLISLFRRAERRWLAH 231
|
|
| BatB |
COG4597 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
53-173 |
1.21e-19 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443651 [Multi-domain] Cd Length: 397 Bit Score: 85.97 E-value: 1.21e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 53 RWFSRFYVSF--FRGTPLLVQLFL---IYYGLPQL-------GIQLDP-LPAALIGFSLNMAAYTSEILRAAIASIDRGQ 119
Cdd:COG4597 216 QRFPVWWISLalLVGLPLLAFLLLgapLSLDYPELkgfnfrgGLTLSPeFVALLLALSLYTAAFIAEIVRAGIQAVSKGQ 295
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 489332446 120 WEAAASIGMSKAQTLYRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELF 173
Cdd:COG4597 296 TEAARALGLRPGQTLRLVVLPQALRVIIPPLTSQYLNLTKNSSLAVAIGYPDLV 349
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
20-204 |
1.80e-18 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 79.63 E-value: 1.80e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 20 ALYTVVLSLGGMFFGLLLGFVLALLRLYAIAPLRWFSRFYVSFFRGTPLLVQLFLIYYGLPQLG---IQLDPLPAALIGF 96
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLgwgILPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 97 SLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKAQTLYRAILPQAARTALPPLGNSFISLVKDTALAATIQVPELFRQA 176
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160
|
170 180
....*....|....*....|....*...
gi 489332446 177 QLITARTFEIFTMYLAAALIYWALASVL 204
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLL 188
|
|
| PRK15135 |
PRK15135 |
histidine ABC transporter permease HisQ; |
16-203 |
1.82e-18 |
|
histidine ABC transporter permease HisQ;
Pssm-ID: 185089 [Multi-domain] Cd Length: 228 Bit Score: 80.61 E-value: 1.82e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 16 LLKGALYTVVLSLGGMFFGLLLGFVLALLRLYAIAPLRWFSRFYVSFFRGTPLLVQLFLIYYGLP--------QLG---I 84
Cdd:PRK15135 9 ILQGALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPDLVLMLLIFYGLQialnsvteALGvgqI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 85 QLDPLPAALIGFSLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKAQTLYRAILPQAARTALPPLGNSFISLVKDTALA 164
Cdd:PRK15135 89 DIDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQVILKATALV 168
|
170 180 190
....*....|....*....|....*....|....*....
gi 489332446 165 ATIQVPELFRQAQLITARTFEIFTMYLAAALIYWALASV 203
Cdd:PRK15135 169 SLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTV 207
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
52-217 |
2.48e-15 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 71.18 E-value: 2.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 52 LRWFSRFYVSFFRGTPLLVQLFLIYYGLPQLGIQLDPLPAaLIGFSLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKA 131
Cdd:pfam00528 16 LDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPA-IILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRW 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 132 QTLYRAILPQAARTALPPLGNSFISLVKDTALAATI----QVPELFRQAQLITaRTFEIFTMYLAAALIYWALASVLAHF 207
Cdd:pfam00528 95 QIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGY-DYPEIQGPVLAAALILLLLNLLVDIL 173
|
170
....*....|
gi 489332446 208 QARLEARVNR 217
Cdd:pfam00528 174 QRLLDPRVRK 183
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
59-144 |
3.23e-03 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 38.22 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489332446 59 YVSFFRGTPLLVQLFLIYYGLPQLGIQldPLPAALIGFSLNMAAYTSEILRAAIASIDRGQWEAAASIGMSKAQTLYRAI 138
Cdd:COG1178 111 WIALFGPNGLLNTLLRALFGLEPPDIY--GLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVT 188
|
....*.
gi 489332446 139 LPQAAR 144
Cdd:COG1178 189 LPLLRP 194
|
|
| |
