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Conserved domains on  [gi|489338490|ref|WP_003245692|]
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MULTISPECIES: flagellar type III secretion system pore protein FliP [Bacillaceae]

Protein Classification

flagellar type III secretion system pore protein FliP( domain architecture ID 10003557)

flagellar type III secretion system pore protein FliP plays a role in the flagellum-specific transport system

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
5-221 1.14e-128

Flagellar biosynthesis protein FliP [Cell motility];


:

Pssm-ID: 440949  Cd Length: 249  Bit Score: 362.89  E-value: 1.14e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490   5 INIFSSSDPENVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMAPTFS 84
Cdd:COG1338   32 LTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTPPNQVLIGLALFLTFFVMAPVFD 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490  85 EINKEALTPLMDNKISLDEAYTKAEEPIKEFMSKHTRQKDLALFMNYAKMDKPESLKDIPLTTMVPAFAISELKTAFQIG 164
Cdd:COG1338  112 QIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPPPETPEDVPLRVLIPAFVISELKTAFQIG 191
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 489338490 165 FMIFIPFLIIDMVVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
Cdd:COG1338  192 FLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRSF 248
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
5-221 1.14e-128

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 362.89  E-value: 1.14e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490   5 INIFSSSDPENVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMAPTFS 84
Cdd:COG1338   32 LTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTPPNQVLIGLALFLTFFVMAPVFD 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490  85 EINKEALTPLMDNKISLDEAYTKAEEPIKEFMSKHTRQKDLALFMNYAKMDKPESLKDIPLTTMVPAFAISELKTAFQIG 164
Cdd:COG1338  112 QIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPPPETPEDVPLRVLIPAFVISELKTAFQIG 191
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 489338490 165 FMIFIPFLIIDMVVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
Cdd:COG1338  192 FLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRSF 248
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
1-221 7.38e-118

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 335.24  E-value: 7.38e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490   1 MNEFINIFSSSDPENVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMA 80
Cdd:PRK05699  24 LPGLNLLPGANGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQTPPNQVLIGLALFLTFFIMS 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490  81 PTFSEINKEALTPLMDNKISLDEAYTKAEEPIKEFMSKHTRQKDLALFMNYAKMdKPESLKDIPLTTMVPAFAISELKTA 160
Cdd:PRK05699 104 PVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAGE-PPKTPEDVPLSVLVPAFVLSELKTA 182
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489338490 161 FQIGFMIFIPFLIIDMVVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
Cdd:PRK05699 183 FQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSF 243
FliP pfam00813
FliP family;
27-217 6.45e-112

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 318.20  E-value: 6.45e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490   27 TVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMAPTFSEINKEALTPLMDNKISLDEAYT 106
Cdd:pfam00813   2 TVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEALE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490  107 KAEEPIKEFMSKHTRQKDLALFMNYAKMdKPESLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMSMG 186
Cdd:pfam00813  82 RASEPLREFMLKQTREKDLALFLDLAGQ-WPETAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSMG 160
                         170       180       190
                  ....*....|....*....|....*....|.
gi 489338490  187 MMMLPPVMISLPFKILLFVLVDGWYLIVKSL 217
Cdd:pfam00813 161 MMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
27-221 2.71e-102

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 294.29  E-value: 2.71e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490   27 TVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMAPTFSEINKEALTPLMDNKISLDEAYT 106
Cdd:TIGR01103   3 TVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEAYQ 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490  107 KAEEPIKEFMSKHTRQKDLALFMNYAKMDKPESLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMSMG 186
Cdd:TIGR01103  83 KAEEPLREFMLRQTRDKDLALFMRLAKIPKPQTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMAMG 162
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 489338490  187 MMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
Cdd:TIGR01103 163 MMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQSF 197
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
5-221 1.14e-128

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 362.89  E-value: 1.14e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490   5 INIFSSSDPENVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMAPTFS 84
Cdd:COG1338   32 LTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTPPNQVLIGLALFLTFFVMAPVFD 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490  85 EINKEALTPLMDNKISLDEAYTKAEEPIKEFMSKHTRQKDLALFMNYAKMDKPESLKDIPLTTMVPAFAISELKTAFQIG 164
Cdd:COG1338  112 QIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPPPETPEDVPLRVLIPAFVISELKTAFQIG 191
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 489338490 165 FMIFIPFLIIDMVVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
Cdd:COG1338  192 FLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRSF 248
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
1-221 7.38e-118

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 335.24  E-value: 7.38e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490   1 MNEFINIFSSSDPENVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMA 80
Cdd:PRK05699  24 LPGLNLLPGANGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQTPPNQVLIGLALFLTFFIMS 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490  81 PTFSEINKEALTPLMDNKISLDEAYTKAEEPIKEFMSKHTRQKDLALFMNYAKMdKPESLKDIPLTTMVPAFAISELKTA 160
Cdd:PRK05699 104 PVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAGE-PPKTPEDVPLSVLVPAFVLSELKTA 182
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489338490 161 FQIGFMIFIPFLIIDMVVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
Cdd:PRK05699 183 FQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSF 243
FliP pfam00813
FliP family;
27-217 6.45e-112

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 318.20  E-value: 6.45e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490   27 TVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMAPTFSEINKEALTPLMDNKISLDEAYT 106
Cdd:pfam00813   2 TVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEALE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490  107 KAEEPIKEFMSKHTRQKDLALFMNYAKMdKPESLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMSMG 186
Cdd:pfam00813  82 RASEPLREFMLKQTREKDLALFLDLAGQ-WPETAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSMG 160
                         170       180       190
                  ....*....|....*....|....*....|.
gi 489338490  187 MMMLPPVMISLPFKILLFVLVDGWYLIVKSL 217
Cdd:pfam00813 161 MMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
27-221 2.71e-102

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 294.29  E-value: 2.71e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490   27 TVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMAPTFSEINKEALTPLMDNKISLDEAYT 106
Cdd:TIGR01103   3 TVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEAYQ 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490  107 KAEEPIKEFMSKHTRQKDLALFMNYAKMDKPESLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMSMG 186
Cdd:TIGR01103  83 KAEEPLREFMLRQTRDKDLALFMRLAKIPKPQTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMAMG 162
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 489338490  187 MMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
Cdd:TIGR01103 163 MMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQSF 197
EscR COG4790
Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and ...
27-221 1.55e-69

Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443819  Cd Length: 216  Bit Score: 211.57  E-value: 1.55e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490  27 TVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMAPTFSEINKEALT--PLMDNKISLDEA 104
Cdd:COG4790   15 ALLSLLPFLVVMGTSFLKISVVLSLLRNALGVQQVPPNMVLNGIALILTLFVMAPVGQEIYDRLQAapVDFSSSASVLEA 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490 105 YTKAEEPIKEFMSKHTRQKDLALFMNYAKMDKPE----SLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVAS 180
Cdd:COG4790   95 VDAGLEPLRDFLKKNTDPEERAFFLDAAQRLWPEeyaaKLKPDDLLVLLPAFVLSELTSAFKIGFLLYLPFVVIDLVVSN 174
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 489338490 181 VLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
Cdd:COG4790  175 ILLALGMMMVSPMTISLPFKLLLFVLVDGWTLLLHGLVLSY 215
PRK12430 PRK12430
putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
17-221 1.52e-68

putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional


Pssm-ID: 237101 [Multi-domain]  Cd Length: 379  Bit Score: 214.75  E-value: 1.52e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490  17 SSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMAPTFSEINKEALTPLMD 96
Cdd:PRK12430 173 SVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFDKIYKDAYLPFSQ 252
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490  97 NKISLDEAYTKAEEPIKEFMSKHTRQKDLALFMNYAKMDKPESLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDM 176
Cdd:PRK12430 253 EKINMDDAILKGAMPLKKFMLNQTRTPDLELFSKLAHISSYKNKNEIPMRILLPSFITSELKTAFQIGFTIFIPFLIIDL 332
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 489338490 177 VVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
Cdd:PRK12430 333 VVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSF 377
fliP PRK12783
flagellar biosynthesis protein FliP; Reviewed
20-221 1.01e-67

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 171720  Cd Length: 255  Bit Score: 208.57  E-value: 1.01e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490  20 VKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMAPTFSEINKEALTPLMDNKI 99
Cdd:PRK12783  51 IQLVALLTVLSLAPGLLVMVTSFTRFAVALSFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRI 130
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490 100 SLDEAYTKAEEPIKEFMSKHTRQKDLALFMNYA--KMDKPESLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMV 177
Cdd:PRK12783 131 SEEEAFGKIVDPFREFMTQHVRPKDLQTFTDLAsrSFPKAEAGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDMI 210
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 489338490 178 VASVLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
Cdd:PRK12783 211 VATIVMSMGMMMLPPTVISLPFKVLFFVLIDGWNLLVSGLVRSF 254
PRK12797 PRK12797
type III secretion system protein YscR; Provisional
28-218 4.44e-59

type III secretion system protein YscR; Provisional


Pssm-ID: 237210  Cd Length: 213  Bit Score: 185.07  E-value: 4.44e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490  28 VFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMAPTFSEINKEALTPL--MDNKISLDEAY 105
Cdd:PRK12797  16 LLSLLPLIAVMGTSFLKISVVLSLLRNALGVQQVPPNMALYGLALILTLFVMAPVGLAIQDRLQQPPlsLQDPDSVLQLL 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490 106 TKAEEPIKEFMSKHTRQKDLALFMNYAKMDKPE----SLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASV 181
Cdd:PRK12797  96 DAALAPLRDFLKKHTDERERTFFVRSAQRIWPEeaadSLKKDDLLILIPAFTLSELTRAFEIGFLLYLPFIVIDLIISNI 175
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 489338490 182 LMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLL 218
Cdd:PRK12797 176 LLAMGMMMVSPTTISLPFKLLLFVLVDGWSRLLHGLV 212
yscR TIGR01102
type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic ...
30-217 2.49e-51

type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic virulence translocation proteins in bacteria. It derives its name:'Yop' from Yersinia enterocolitica species, where this virulence protein was identified. In bacterial pathogenesis, Yop effector proteins are translocated into the eukaryotic cells. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130172  Cd Length: 202  Bit Score: 164.82  E-value: 2.49e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490   30 SVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMAPTFSEINKEALTPL--MDNKISLDEAYTK 107
Cdd:TIGR01102   9 SLLPFIIVVGTSFLKISVVLGILRNALGVQQVPPNMALYGIALILSMFVMAPVGHQAQDRFHQEPvaYSNIDFLQKSLDA 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490  108 AEEPIKEFMSKHTRQKDLALFMNYAKMDKPESLKDI----PLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLM 183
Cdd:TIGR01102  89 GLAPYREFLKKNTDEDEVAFFERSTQKMWPKEMADRlkkdSLLILLPAFTLSELTAAFKIGFLLYLPFIVIDLIVSNILL 168
                         170       180       190
                  ....*....|....*....|....*....|....
gi 489338490  184 SMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSL 217
Cdd:TIGR01102 169 ALGMMMVSPMTISLPFKLLLFVLIDGWSRLLHGL 202
PRK09617 PRK09617
type III secretion system protein; Reviewed
27-221 3.45e-50

type III secretion system protein; Reviewed


Pssm-ID: 236593  Cd Length: 243  Bit Score: 163.38  E-value: 3.45e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490  27 TVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMAPTFSEINKEALTPLMDNKISLDE--- 103
Cdd:PRK09617  33 IFLALSPFLVMLLTSFLKIIIVLSLLRNALGVQQTPPSQVLNGIALILSIYIMFPTGVAMYNDAQKGIESNAVPRSLfsa 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490 104 --------AYTKAEEPIKEFMSKHTRQKDLALFMNYAKMDKPESLKDI----PLTTMVPAFAISELKTAFQIGFMIFIPF 171
Cdd:PRK09617 113 egaetvfvAANKSKEPLRSFLIKNTPKPQIASFYKISQKTFPPEIRDAltpsDFMIIIPAFIMGQLKNAFEIGVLIYLPF 192
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 489338490 172 LIIDMVVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221
Cdd:PRK09617 193 FVIDLVTANVLLAMGMMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 242
spaP PRK12796
EscR/YscR/HrcR family type III secretion system export apparatus protein;
27-218 1.75e-37

EscR/YscR/HrcR family type III secretion system export apparatus protein;


Pssm-ID: 237209  Cd Length: 221  Bit Score: 130.10  E-value: 1.75e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490  27 TVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMAPTFSEINKEALTPLMD--NKISLDEA 104
Cdd:PRK12796  12 SFFTLLPFIIASGTCFIKFSIVFVMVRNALGLQQVPSNMTLNGIALLLSMFVMMPVIQDIYVYFQNEPVDfnNIASVVKF 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489338490 105 YTKAEEPIKEFMSKHTrQKDLALFMNYAKMDKPES---------LKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIID 175
Cdd:PRK12796  92 VDEGLGGYRDYLIKYS-DPELVRFFERAQKKRSYGdeaeandhdKDEISLFSLLPAYALSEIKSAFKIGFYLYLPFVVVD 170
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 489338490 176 MVVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLL 218
Cdd:PRK12796 171 LVVSSVLLALGMMMMSPVTISVPIKLILFVAMDGWTLLSKGLI 213
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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