NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|489426767|ref|WP_003332420|]
View 

DUF2626 family protein [Schinkia azotoformans]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF2626 super family cl12672
Protein of unknown function (DUF2626); This family is conserved in the Bacillaceae family. ...
 1-73 2.38e-16

Protein of unknown function (DUF2626); This family is conserved in the Bacillaceae family. Several members are named as YqgY. The function is not known.


The actual alignment was detected with superfamily member pfam11117:

Pssm-ID: 431664  Cd Length: 73  Bit Score: 66.22  E-value: 2.38e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489426767   1 MGNMYKVMAFWTAIFSIMFYLGHMHTTSLLFLGITVLFLAIGFLQLSERMGVYIFAAFLTVFFIGFTYWTTFM 73
Cdd:pfam11117  1 MDRMFRVLGFWTGIFAVMFFAGDMIEMALLFFAQTAFFVALGYLKLSERMYIYIFGAYLTVFFVGFTYYSTFI 73
 
Name Accession Description Interval E-value
DUF2626 pfam11117
Protein of unknown function (DUF2626); This family is conserved in the Bacillaceae family. ...
 1-73 2.38e-16

Protein of unknown function (DUF2626); This family is conserved in the Bacillaceae family. Several members are named as YqgY. The function is not known.


Pssm-ID: 431664  Cd Length: 73  Bit Score: 66.22  E-value: 2.38e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489426767   1 MGNMYKVMAFWTAIFSIMFYLGHMHTTSLLFLGITVLFLAIGFLQLSERMGVYIFAAFLTVFFIGFTYWTTFM 73
Cdd:pfam11117  1 MDRMFRVLGFWTGIFAVMFFAGDMIEMALLFFAQTAFFVALGYLKLSERMYIYIFGAYLTVFFVGFTYYSTFI 73
 
Name Accession Description Interval E-value
DUF2626 pfam11117
Protein of unknown function (DUF2626); This family is conserved in the Bacillaceae family. ...
 1-73 2.38e-16

Protein of unknown function (DUF2626); This family is conserved in the Bacillaceae family. Several members are named as YqgY. The function is not known.


Pssm-ID: 431664  Cd Length: 73  Bit Score: 66.22  E-value: 2.38e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489426767   1 MGNMYKVMAFWTAIFSIMFYLGHMHTTSLLFLGITVLFLAIGFLQLSERMGVYIFAAFLTVFFIGFTYWTTFM 73
Cdd:pfam11117  1 MDRMFRVLGFWTGIFAVMFFAGDMIEMALLFFAQTAFFVALGYLKLSERMYIYIFGAYLTVFFVGFTYYSTFI 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH