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Conserved domains on  [gi|489505698|ref|WP_003410575|]
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MULTISPECIES: ABC transporter permease [Pseudomonas]

Protein Classification

ABC transporter permease( domain architecture ID 11439449)

ABC transporter permease is the transmembrane (TM) subunit in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter which generally binds a type 2 PBP; similar to the permease subunit of ABC-type dipeptide/oligopeptide/nickel transport systems

Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 14-287 9.94e-123

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


:

Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 351.72  E-value: 9.94e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  14 PRSRSPFLKKFLANKGAVLGAAVLLLFVLAAVLAPWIAPHDPLKANFLAVRKAPSLIYWMGTDELGRDLFSRLLYGARSS 93
Cdd:COG1173    2 RSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARIS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  94 LLAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIISQVMEALLSCPFLVLAIALGAFLGPSLTNAMIAIGLSAMPIFARLTR 173
Cdd:COG1173   82 LLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVR 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 174 GQVLSIKHEDYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILAEASLSFLGLGQQPPSPSWGSMLNTAKNF 253
Cdd:COG1173  162 AQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEGRNY 241

                        250       260       270
                 ....*....|....*....|....*....|....
gi 489505698 254 MEQAPWMSIAPGVAIYITVLCFNLLGDGLRDALD 287
Cdd:COG1173  242 LLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
 
Name Accession Description Interval E-value
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 14-287 9.94e-123

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 351.72  E-value: 9.94e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  14 PRSRSPFLKKFLANKGAVLGAAVLLLFVLAAVLAPWIAPHDPLKANFLAVRKAPSLIYWMGTDELGRDLFSRLLYGARSS 93
Cdd:COG1173    2 RSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARIS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  94 LLAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIISQVMEALLSCPFLVLAIALGAFLGPSLTNAMIAIGLSAMPIFARLTR 173
Cdd:COG1173   82 LLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVR 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 174 GQVLSIKHEDYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILAEASLSFLGLGQQPPSPSWGSMLNTAKNF 253
Cdd:COG1173  162 AQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEGRNY 241

                        250       260       270
                 ....*....|....*....|....*....|....
gi 489505698 254 MEQAPWMSIAPGVAIYITVLCFNLLGDGLRDALD 287
Cdd:COG1173  242 LLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
PRK15082 PRK15082
glutathione ABC transporter permease GsiD; Provisional
 1-289 1.11e-85

glutathione ABC transporter permease GsiD; Provisional


Pssm-ID: 185040 [Multi-domain]  Cd Length: 301  Bit Score: 258.51  E-value: 1.11e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698   1 MTAIASLSHSAILPRSRSP---FLKKFLANKGAVLGAAVLLLFVLAAVLAPWIAPHDPlkANFL---AVRKAPSLIYWMG 74
Cdd:PRK15082   6 RQAVLNAMPLVKPDQVRTPwheFWRRFRRQHVALVAGLFVLLLIVVAIFAPWIAPYDA--ENYFdydALNAGPSLQHWFG 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  75 TDELGRDLFSRLLYGARSSLLAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIISQVMEALLSCPFLVLAIALGAFLGPSLT 154
Cdd:PRK15082  84 VDSLGRDIFSRILVGARISLAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMA 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 155 NAMIAIGLSAMPIFARLTRGQVLSIKHEDYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILAEASLSFLGL 234
Cdd:PRK15082 164 NVIIAVAIFSIPAFARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGL 243

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489505698 235 GQQPPSPSWGSMLNTAKNFMEQAPWMSIAPGVAIYITVLCFNLLGDGLRDALDPK 289
Cdd:PRK15082 244 GAQPPTPEWGAMLNEARADMVIAPHVALFPSLAIFLTVLAFNLLGDGLRDALDPK 298
nickel_nikC TIGR02790
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ...
 48-287 1.02e-82

nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131837 [Multi-domain]  Cd Length: 258  Bit Score: 249.61  E-value: 1.02e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698   48 PWIAPHDPLKANFLAVRKAPSLIYWMGTDELGRDLFSRLLYGARSSLLAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIIS 127
Cdd:TIGR02790  19 PWIAPHDPLAQNLPMRLLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGLLIGGLAGYIGGRVDEAIM 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  128 QVMEALLSCPFLVLAIALGAFLGPSLTNAMIAIGLSAMPIFARLTRGQVLSIKHEDYLEGARAIGLPDRWIILRYVLPNV 207
Cdd:TIGR02790  99 RVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAARTSGASHWQIIRRHILPNI 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  208 MSPLVVQATLTIASAILAEASLSFLGLGQQPPSPSWGSMLNTAKNFMEQAPWMSIAPGVAIYITVLCFNLLGDGLRDALD 287
Cdd:TIGR02790 179 LSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIYPGLAILISVMAFNLLGDALRDHLG 258
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 90-282 2.40e-19

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 83.48  E-value: 2.40e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  90 ARSSLLAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIISQVMEALLSCPFLVLAIALGAFLG--------PSLTNAMIAIG 161
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGvllgwgilPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 162 LSAMPIFARLTRGQVLSIKHEDYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILAEASLSFLGLGqQPPSP 241
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG-EAPGP 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 489505698 242 SWGSMLNTAKNFmeqapwmsiaPGVAIYITVLCFNLLGDGL 282
Cdd:cd06261  160 GTGLLLIFAILF----------PGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 108-289 3.50e-18

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 80.04  E-value: 3.50e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  108 GVPLGLLAG-YFGGKLDMIISQVMEALLSCPFLVLAIALGAFLGPS----LTNAMIAIGLSAMPIFARLTRGQVLSIKHE 182
Cdd:pfam00528   1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSilghGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  183 DYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILAEASLSFL----GLGQQPPSPSWGSMLNtaknfmeqap 258
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYP---------- 150

                         170       180       190
                  ....*....|....*....|....*....|.
gi 489505698  259 wMSIAPGVAIYITVLCFNLLGDGLRDALDPK 289
Cdd:pfam00528 151 -EIQGPVLAAALILLLLNLLVDILQRLLDPR 180
 
Name Accession Description Interval E-value
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 14-287 9.94e-123

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 351.72  E-value: 9.94e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  14 PRSRSPFLKKFLANKGAVLGAAVLLLFVLAAVLAPWIAPHDPLKANFLAVRKAPSLIYWMGTDELGRDLFSRLLYGARSS 93
Cdd:COG1173    2 RSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARIS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  94 LLAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIISQVMEALLSCPFLVLAIALGAFLGPSLTNAMIAIGLSAMPIFARLTR 173
Cdd:COG1173   82 LLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVR 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 174 GQVLSIKHEDYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILAEASLSFLGLGQQPPSPSWGSMLNTAKNF 253
Cdd:COG1173  162 AQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEGRNY 241

                        250       260       270
                 ....*....|....*....|....*....|....
gi 489505698 254 MEQAPWMSIAPGVAIYITVLCFNLLGDGLRDALD 287
Cdd:COG1173  242 LLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
PRK15082 PRK15082
glutathione ABC transporter permease GsiD; Provisional
 1-289 1.11e-85

glutathione ABC transporter permease GsiD; Provisional


Pssm-ID: 185040 [Multi-domain]  Cd Length: 301  Bit Score: 258.51  E-value: 1.11e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698   1 MTAIASLSHSAILPRSRSP---FLKKFLANKGAVLGAAVLLLFVLAAVLAPWIAPHDPlkANFL---AVRKAPSLIYWMG 74
Cdd:PRK15082   6 RQAVLNAMPLVKPDQVRTPwheFWRRFRRQHVALVAGLFVLLLIVVAIFAPWIAPYDA--ENYFdydALNAGPSLQHWFG 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  75 TDELGRDLFSRLLYGARSSLLAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIISQVMEALLSCPFLVLAIALGAFLGPSLT 154
Cdd:PRK15082  84 VDSLGRDIFSRILVGARISLAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMA 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 155 NAMIAIGLSAMPIFARLTRGQVLSIKHEDYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILAEASLSFLGL 234
Cdd:PRK15082 164 NVIIAVAIFSIPAFARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGL 243

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489505698 235 GQQPPSPSWGSMLNTAKNFMEQAPWMSIAPGVAIYITVLCFNLLGDGLRDALDPK 289
Cdd:PRK15082 244 GAQPPTPEWGAMLNEARADMVIAPHVALFPSLAIFLTVLAFNLLGDGLRDALDPK 298
nickel_nikC TIGR02790
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ...
 48-287 1.02e-82

nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131837 [Multi-domain]  Cd Length: 258  Bit Score: 249.61  E-value: 1.02e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698   48 PWIAPHDPLKANFLAVRKAPSLIYWMGTDELGRDLFSRLLYGARSSLLAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIIS 127
Cdd:TIGR02790  19 PWIAPHDPLAQNLPMRLLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGLLIGGLAGYIGGRVDEAIM 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  128 QVMEALLSCPFLVLAIALGAFLGPSLTNAMIAIGLSAMPIFARLTRGQVLSIKHEDYLEGARAIGLPDRWIILRYVLPNV 207
Cdd:TIGR02790  99 RVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAARTSGASHWQIIRRHILPNI 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  208 MSPLVVQATLTIASAILAEASLSFLGLGQQPPSPSWGSMLNTAKNFMEQAPWMSIAPGVAIYITVLCFNLLGDGLRDALD 287
Cdd:TIGR02790 179 LSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIYPGLAILISVMAFNLLGDALRDHLG 258
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
31-289 4.39e-82

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 249.35  E-value: 4.39e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  31 VLGAAVLLLFVLAAVLAPWIAPHDPLKANFLAVRKAPSLIYWMGTDELGRDLFSRLLYGARSSLLAGGVSVAIAMFIGVP 110
Cdd:PRK09881  34 VTGAVIIVLMLLMMIFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSL 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 111 LGLLAGYFGGKLDMIISQVMEALLSCPFLVLAIALGAFLGPSLTNAMIAIGLSAMPIFARLTRGQVLSIKHEDYLEGARA 190
Cdd:PRK09881 114 LGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKT 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 191 IGlPDRWIILRY-VLPNVMSPLVVQATLTIASAILAEASLSFLGLGQQPPSPSWGSMLNTAKNFMEQAPWMSIAPGVAIY 269
Cdd:PRK09881 194 FG-ASRWHLISWhILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAIL 272

                        250       260
                 ....*....|....*....|
gi 489505698 270 ITVLCFNLLGDGLRDALDPK 289
Cdd:PRK09881 273 LTAVGFNLFGDGIRDLLDPK 292
PRK10913 PRK10913
dipeptide ABC transporter permease DppC;
20-289 2.06e-72

dipeptide ABC transporter permease DppC;


Pssm-ID: 182833 [Multi-domain]  Cd Length: 300  Bit Score: 224.66  E-value: 2.06e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  20 FLKKFLANKGAVLGAAVLLLFVLAAVLAPWIAPHDPLKANFLAVRKAP------SLIYWMGTDELGRDLFSRLLYGARSS 93
Cdd:PRK10913  22 FWHYFKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQFRDALLAPPvwqeggSWAHILGTDDVGRDVLSRLMYGARLS 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  94 LLAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIISQVMEALLSCPFLVLAIALGAFLGPSLTNAMIAIGLSAMPIFARLTR 173
Cdd:PRK10913 102 LLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIVNAALALTFVALPHYVRLTR 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 174 GQVLSIKHEDYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILAEASLSFLGLGQQPPSPSWGSMLNTAKNF 253
Cdd:PRK10913 182 AAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQF 261

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 489505698 254 MEQAPWMSIAPGVAIYITVLCFNLLGDGLRDALDPK 289
Cdd:PRK10913 262 AQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPK 297
nikC PRK10417
nickel transporter permease NikC; Provisional
 48-288 3.87e-68

nickel transporter permease NikC; Provisional


Pssm-ID: 236687 [Multi-domain]  Cd Length: 272  Bit Score: 212.99  E-value: 3.87e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  48 PWIAPHDPLKANFLAVRKAPSLIYWMGTDELGRDLFSRLLYGARSSLLAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIIS 127
Cdd:PRK10417  24 QWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAGTRVSLGSVMACLLLVLALGLVIGGSAGLLGGRVDQATM 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 128 QVMEALLSCPFLVLAIALGAFLGPSLTNAMIAIGLSAMPIFARLTRGQVLSIKHEDYLEGARAIGLPDRWIILRYVLPNV 207
Cdd:PRK10417 104 RVADMFMTFPTSILAFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLAARLSGAGHVRVFIDHLLPAV 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 208 MSPLVVQATLTIASAILAEASLSFLGLGQQPPSPSWGSMLNTAKNFMEQAPWMSIAPGVAIYITVLCFNLLGDGLRDALD 287
Cdd:PRK10417 184 IPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMFWPGLALFISVMAFNLLGDALRDHLD 263


                 .
gi 489505698 288 P 288
Cdd:PRK10417 264 P 264
SapC COG4171
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
20-287 1.14e-63

ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];


Pssm-ID: 443331 [Multi-domain]  Cd Length: 296  Bit Score: 201.97  E-value: 1.14e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  20 FLKKFLANKGAVLGAAVLLLFVLAAVLAPWIAPHDPLKANFLAVRKAPS------LIYWMGTDELGRDLFSRLLYGARSS 93
Cdd:COG4171   19 IWQSFRKNPLAMIGLYGFLFLILLALFGPLLAPYSPDQQFIGALLLPPSwddngdVSFFLGTDDLGRDILSRLLYGARYT 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  94 LLAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIISQVMEALLSCPFLVLAIALGAFLGPSLTNAMIAIGLSAMPIFARLTR 173
Cdd:COG4171   99 FGSALLVVLAAAIIGGIIGILAGMSRGLKSSILNHLLDTLLSIPSLLLAIIIVALLGPGLENAMLAITLALLPQFIHAIY 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 174 GQVLSIKHEDYLEGARAIGLPdRWIILRY-VLPNVMSPLVVQATLTIASAILAEASLSFLGLGQQPPSPSWGSMLNTAKN 252
Cdd:COG4171  179 QAVHQELKKEYVLAARLDGAS-NWQLLRYsILPNILEVLVTELTRALSIAILDISALGFLGLGAQLPSPEWGAMLGDSLE 257

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 489505698 253 FMEQAPWMSIAPGVAIYITVLCFNLLGDGLRDALD 287
Cdd:COG4171  258 LIYLAPWTVILPGLAIMFSVLIVNLVGDGLRRALN 292
PRK15406 PRK15406
oligopeptide ABC transporter permease OppC; Provisional
 22-289 9.77e-59

oligopeptide ABC transporter permease OppC; Provisional


Pssm-ID: 185304 [Multi-domain]  Cd Length: 302  Bit Score: 189.66  E-value: 9.77e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  22 KKFLANKGAVLGAAVLLLFVLAAVLAPWIAPHDPLKANFLAVRKAPSLI--YWMGTDELGRDLFSRLLYGARSSLLAGGV 99
Cdd:PRK15406  31 RRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWGMMSSAPDMEsgHYFGTDSSGRDLLVRVAIGGRISLMVGVA 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 100 SVAIAMFIGVPLGLLAGYFGGKLDMIISQVMEALLSCPFLVLAIALGAFLGPSLTNAMIAIGLSAMPIFARLTRGQVLSI 179
Cdd:PRK15406 111 AALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSL 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 180 KHEDYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILAEASLSFLGLGQQPPSPSWGSMLNTAKNFMEQAPW 259
Cdd:PRK15406 191 KRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPW 270

                        250       260       270
                 ....*....|....*....|....*....|
gi 489505698 260 MSIAPGVAIYITVLCFNLLGDGLRDALDPK 289
Cdd:PRK15406 271 LLLFPAGFLVVTLFCFNFIGDGLRDALDPK 300
YejE COG4239
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ...
 66-289 7.05e-52

ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443381 [Multi-domain]  Cd Length: 342  Bit Score: 173.03  E-value: 7.05e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  66 APSLIYWMGTDELGRDLFSRLLYGARSSLLAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIISQVMEALLSCPFLVLAIAL 145
Cdd:COG4239  116 PPSAENWLGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGAVQGYFGGRVDLLFQRFIEIWSSMPELYLLIIL 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 146 GAFLGPSLTNAMIAIGLSAMPIFARLTRGQVLSIKHEDYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILA 225
Cdd:COG4239  196 SSIFQPSFWLLLGILLLFGWMGLVGVVRAEFLRARNLEYVRAARALGVSDRRIMFRHILPNAMVATLTFLPFILSGAITT 275

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489505698 226 EASLSFLGLGQQPPSPSWGSMLNTAKNFMeQAPWMSIAPGVAIYITVLCFNLLGDGLRDALDPK 289
Cdd:COG4239  276 LTSLDFLGFGLPPGSPSLGELLAQGKNNL-QAPWLGLSAFVVLALMLSLLVFIGEAVRDAFDPR 338
PRK15111 PRK15111
peptide ABC transporter permease SapC;
22-287 1.06e-45

peptide ABC transporter permease SapC;


Pssm-ID: 185066 [Multi-domain]  Cd Length: 296  Bit Score: 156.01  E-value: 1.06e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  22 KKFLANKGAVLGAAVLLLFVLAAVLAPWIAPHdPLKANFLAVRKAP-------SLIYWMGTDELGRDLFSRLLYGARSSL 94
Cdd:PRK15111  21 RKFYSDALAMVGLYGCAGLALLCLFGGWLAPY-GIDQQFLGYQLLPpswsrygEVSFFLGTDDLGRDVLSRLLSGAAPTV 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  95 LAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIISQVMEALLSCPFLVLAIALGAFLGPSLTNAMIAIGLSAMPIFARLTRG 174
Cdd:PRK15111 100 GGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLSHAMFAVWLALLPRMVRSIYS 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 175 QVLSIKHEDYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILAEASLSFLGLGQQPPSPSWGSMLNTAKNFM 254
Cdd:PRK15111 180 AVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDSLELI 259

                        250       260       270
                 ....*....|....*....|....*....|...
gi 489505698 255 EQAPWMSIAPGVAIYITVLCFNLLGDGLRDALD 287
Cdd:PRK15111 260 YVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAII 292
PRK15021 PRK15021
microcin C ABC transporter permease; Provisional
 66-288 1.10e-36

microcin C ABC transporter permease; Provisional


Pssm-ID: 184982 [Multi-domain]  Cd Length: 341  Bit Score: 133.57  E-value: 1.10e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  66 APSLIYWMGTDELGRDLFSRLLYGARSSLLAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIISQVMEALLSCPFLVLAIAL 145
Cdd:PRK15021 116 PPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILL 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 146 GAFLGPSLTNAMIAIGLSAMPIFARLTRGQVLSIKHEDYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILA 225
Cdd:PRK15021 196 SSVVQPNFWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITT 275

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489505698 226 EASLSFLGLGQQPPSPSWGSMLNTAKNFMeQAPWMSIAP--GVAIYITVLCFnlLGDGLRDALDP 288
Cdd:PRK15021 276 LTSLDFLGFGLPLGSPSLGELLLQGKNNL-QAPWLGITAflSVAILLSLLIF--IGEAVRDAFDP 337
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 90-282 2.40e-19

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 83.48  E-value: 2.40e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  90 ARSSLLAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIISQVMEALLSCPFLVLAIALGAFLG--------PSLTNAMIAIG 161
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGvllgwgilPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 162 LSAMPIFARLTRGQVLSIKHEDYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILAEASLSFLGLGqQPPSP 241
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG-EAPGP 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 489505698 242 SWGSMLNTAKNFmeqapwmsiaPGVAIYITVLCFNLLGDGL 282
Cdd:cd06261  160 GTGLLLIFAILF----------PGDLGVAAAVALILLLLSL 190
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 93-236 1.07e-18

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 84.35  E-value: 1.07e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  93 SLLAGGVSVAIAMFIGVPLGLLAGYF-GGKLDMIISQVMEALLSCPFLVLAIAL-------------------GAFLGPS 152
Cdd:COG0601   98 TLELALLALLLALLIGIPLGILAALRrGSWLDRLITVLALLGISIPSFWLGLLLillfavklgwlpvsgrvspWEDFLDA 177

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 153 LTNA---MIAIGLSAMPIFARLTRGQVLSIKHEDYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIAS----AILA 225
Cdd:COG0601  178 LRHLilpALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLGGllggAVVV 257

                        170
                 ....*....|.
gi 489505698 226 EASLSFLGLGQ 236
Cdd:COG0601  258 ETVFSWPGLGR 268
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 108-289 3.50e-18

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 80.04  E-value: 3.50e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  108 GVPLGLLAG-YFGGKLDMIISQVMEALLSCPFLVLAIALGAFLGPS----LTNAMIAIGLSAMPIFARLTRGQVLSIKHE 182
Cdd:pfam00528   1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSilghGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  183 DYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILAEASLSFL----GLGQQPPSPSWGSMLNtaknfmeqap 258
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYP---------- 150

                         170       180       190
                  ....*....|....*....|....*....|.
gi 489505698  259 wMSIAPGVAIYITVLCFNLLGDGLRDALDPK 289
Cdd:pfam00528 151 -EIQGPVLAAALILLLLNLLVDILQRLLDPR 180
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 86-235 3.27e-07

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 50.15  E-value: 3.27e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  86 LLYGARSSLLAGGVSVAIAMFIGVPLGLLAGYFgGKLDMIISQVMEALLSCPFLVLAIALGAFLGPSLTNAMIAIGLSAM 165
Cdd:COG0600   59 LWEHLLASLLRVLLGFALAALLGVPLGLLLGLS-RLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAF 137

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489505698 166 PIFARLTRGQVLSIKHeDYLEGARAIGLPD----RWIILRYVLPNVMSPLVVQATLTIASAILAEASLSFLGLG 235
Cdd:COG0600  138 FPILLNTAAGVRSVDP-ELLELARSLGASRwqilRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLG 210
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 151-236 1.01e-06

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 49.33  E-value: 1.01e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 151 PSLTnamiaIGLSAMPIFARLTRGQVLSIKHEDYLEGARAIGLPDRWIILRYVLPNVMSPLV----VQATLTIASAILAE 226
Cdd:PRK15081 176 PSLT-----LGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVtmmgLQFGFLLGGSIVVE 250

                         90
                 ....*....|
gi 489505698 227 ASLSFLGLGQ 236
Cdd:PRK15081 251 KVFNWPGLGR 260
oppB PRK09471
oligopeptide ABC transporter permease OppB;
97-212 3.17e-05

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 44.67  E-value: 3.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  97 GGVSVAIAMFIGVPLGLLAGY-FGGKLDMIISQ------VMEALLSCPFLVL--AIALGAFLGPSLTNA--------MIA 159
Cdd:PRK09471 101 GAAAFFLAVILGVSAGVIAALkQNTKWDYTVMGfamtgvVIPSFVVAPLLVLifAITLHWLPGGGWNGGalkfmilpMVA 180

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 489505698 160 IGLSAMPIFARLTRGQVLSIKHEDYLEGARAIGLPDRWIILRYVLPNVMSPLV 212
Cdd:PRK09471 181 LSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVL 233
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 86-204 1.57e-03

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 38.88  E-value: 1.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  86 LLYGARSSLLAGGVSVAIAMFIGVPLGLLAGYfGGKLDMIISQV-MEALLSCPFLV----LAIALGAFLGP----SLTNA 156
Cdd:PRK09494  15 LLEGAKMTLWISVLGLAGGLVIGLLAGFARAY-GGWIANHIALVfIELIRGTPIVVqvmfIYFALPMAFNDlridPFTAA 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 489505698 157 MIAIGLSAMPIFARLTRGQVLSIkHEDYLEGARAIGLPdRWIILRYVL 204
Cdd:PRK09494  94 VVTIMINSGAYIAEITRGAVLSI-HKGFREAGLALGLS-RRETLRYVI 139
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 83-235 1.85e-03

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 39.06  E-value: 1.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698   83 FSRLLYGARSSLLAGGVSVAIAMFIGVPLGLLAG---YFGGKLDMIISQVMEALLSCPFLVLAIALGAFLGPSLTNAMIA 159
Cdd:TIGR01097  53 LPRILKALLETLAMAILGTVLAAVLAVPLALLAArniTPSPWLYGLARLLLNFLRAIPELVWALIFVAAVGLGPFAGVLA 132

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489505698  160 IGLSAMPIFARLTRGQVLSIKHEdYLEGARAIGlPDRWIILRY-VLPNVMSPLVVQATLTIASAILAEASLSFLGLG 235
Cdd:TIGR01097 133 LAFHTVGFLGKLFAEAIEEVDPG-PVEALRATG-ASKLQVIRYgVLPQVLPQFLSYTLYRFEINVRAAAVLGLVGAG 207
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 81-219 4.81e-03

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 37.36  E-value: 4.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698  81 DLFSRLLYGARSSLLAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIISQVMEALLSCPFLVLAIALGAFLG------PSLT 154
Cdd:COG0765   10 DYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPllgidlSPFV 89

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489505698 155 NAMIAIGLSAMPIFARLTRGQVLSIkHEDYLEGARAIGLPdRWIILRYV-----LPNVMSPLVVQATLTI 219
Cdd:COG0765   90 AAVIALTLNSAAYLAEIVRAGIQSV-PKGQWEAARALGLS-RWQTMRRIilpqaLRIILPPLGNEFISLL 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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