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Conserved domains on  [gi|489521056|ref|WP_003425849|]
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MULTISPECIES: ATP synthase F1 subunit epsilon [Clostridia]

Protein Classification

F1-ATPase_delta domain-containing protein( domain architecture ID 10500676)

F1-ATPase_delta domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 5-83 2.53e-24

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


:

Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 86.72  E-value: 2.53e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056   5 FSLKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKE-GSFKEAKIAEGFINVTQDKTVILTESA 83
Cdd:pfam02823  1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEdGEEEYIAVSGGFLEVQPNKVTILADSA 80
 
Name Accession Description Interval E-value
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 5-83 2.53e-24

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 86.72  E-value: 2.53e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056   5 FSLKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKE-GSFKEAKIAEGFINVTQDKTVILTESA 83
Cdd:pfam02823  1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEdGEEEYIAVSGGFLEVQPNKVTILADSA 80
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 5-85 4.90e-24

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 87.57  E-value: 4.90e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056   5 FSLKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKE-GSFKEAKIAEGFINVTQDKTVILTESA 83
Cdd:cd12152    1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEdGEEKYFAVSGGFLEVTPNRVTILADEA 80


                 ..
gi 489521056  84 EW 85
Cdd:cd12152   81 ER 82
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 5-85 1.23e-23

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 86.78  E-value: 1.23e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056   5 FSLKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKE-GSFKEAKIAEGFINVTQDKTVILTESA 83
Cdd:COG0355    1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEdGEEEYFAVSGGFLEVQPNKVTILADTA 80


                 ..
gi 489521056  84 EW 85
Cdd:COG0355   81 ER 82
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 2-86 5.02e-20

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 77.49  E-value: 5.02e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056   2 ASEFSLKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKEGSFKEA-KIAEGFINVTQDKTVILT 80
Cdd:PRK00571   1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEViAVSGGFLEVQPDKVTVLA 80


                 ....*.
gi 489521056  81 ESAEWI 86
Cdd:PRK00571  81 DSAERA 86
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 7-86 5.76e-16

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 67.28  E-value: 5.76e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056    7 LKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKEGSFKE-AKIAEGFINVTQDKTVILTESAEW 85
Cdd:TIGR01216   4 LEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEhIAVSGGFAEVQPDKVTILADGAVF 83


                  .
gi 489521056   86 I 86
Cdd:TIGR01216  84 A 84
 
Name Accession Description Interval E-value
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 5-83 2.53e-24

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 86.72  E-value: 2.53e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056   5 FSLKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKE-GSFKEAKIAEGFINVTQDKTVILTESA 83
Cdd:pfam02823  1 LKLEIVTPERVVFSGEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKTEdGEEEYIAVSGGFLEVQPNKVTILADSA 80
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 5-85 4.90e-24

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 87.57  E-value: 4.90e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056   5 FSLKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKE-GSFKEAKIAEGFINVTQDKTVILTESA 83
Cdd:cd12152    1 LKLEIVTPERVFFSGEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDEdGEEKYFAVSGGFLEVTPNRVTILADEA 80


                 ..
gi 489521056  84 EW 85
Cdd:cd12152   81 ER 82
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 5-85 1.23e-23

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 86.78  E-value: 1.23e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056   5 FSLKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKE-GSFKEAKIAEGFINVTQDKTVILTESA 83
Cdd:COG0355    1 LKLEIVTPERVLFSGEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEdGEEEYFAVSGGFLEVQPNKVTILADTA 80


                 ..
gi 489521056  84 EW 85
Cdd:COG0355   81 ER 82
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 2-86 5.02e-20

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 77.49  E-value: 5.02e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056   2 ASEFSLKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKEGSFKEA-KIAEGFINVTQDKTVILT 80
Cdd:PRK00571   1 MATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEViAVSGGFLEVQPDKVTVLA 80


                 ....*.
gi 489521056  81 ESAEWI 86
Cdd:PRK00571  81 DSAERA 86
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 7-86 5.76e-16

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 67.28  E-value: 5.76e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056    7 LKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKEGSFKE-AKIAEGFINVTQDKTVILTESAEW 85
Cdd:TIGR01216   4 LEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEhIAVSGGFAEVQPDKVTILADGAVF 83


                  .
gi 489521056   86 I 86
Cdd:TIGR01216  84 A 84
atpC PRK13446
F0F1 ATP synthase subunit epsilon; Provisional
 1-84 1.41e-15

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184056 [Multi-domain]  Cd Length: 136  Bit Score: 66.13  E-value: 1.41e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056   1 MASEFSLKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKEGSFKEAKIAEGFINVTQDKTVILT 80
Cdd:PRK13446   1 MAKKLKLEIVTPEKKVLSEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKKGGKTHYVAVNGGFAEVSNNKVTVLA 80


                 ....
gi 489521056  81 ESAE 84
Cdd:PRK13446  81 ETAE 84
atpC PRK13450
F0F1 ATP synthase subunit epsilon; Provisional
 2-85 8.78e-14

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184059 [Multi-domain]  Cd Length: 132  Bit Score: 61.70  E-value: 8.78e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056   2 ASEFSLKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGI-PVGTLKIKKEGSFKEAKIAEGFINVTQDKTVILT 80
Cdd:PRK13450   1 ANNIKLTILTPEKNFYIGEVKEVITEGLDGDIAILPNHVPLITYLkPTITKIIDENGEKKKIFTSSGVLKVENNEVYILC 80


                 ....*
gi 489521056  81 ESAEW 85
Cdd:PRK13450  81 DASEW 85
atpC PRK13442
F0F1 ATP synthase subunit epsilon; Provisional
 1-84 7.85e-13

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184055 [Multi-domain]  Cd Length: 89  Bit Score: 58.11  E-value: 7.85e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056  1 MASEFSLKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKK-EGSFKEAKIAEGFINVTQDKTVIL 79
Cdd:PRK13442  2 AGATLHVNIVAADRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTpGGERISAAVDGGFISFDSNKLTVL 81


                ....*
gi 489521056 80 TESAE 84
Cdd:PRK13442 82 AERAE 86
atpC PRK13449
ATP synthase F1 subunit epsilon;
1-84 5.50e-12

ATP synthase F1 subunit epsilon;


Pssm-ID: 184058 [Multi-domain]  Cd Length: 88  Bit Score: 55.93  E-value: 5.50e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056  1 MASEFSLkvVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKEGSFKEAKI--AEGFINVTQDKTVI 78
Cdd:PRK13449  2 AKLHFEL--VTPERLLRSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGAAPEVFhvQGGFAEVNEKGLTI 79


                ....*.
gi 489521056 79 LTESAE 84
Cdd:PRK13449 80 LAEHAV 85
atpC PRK13444
F0F1 ATP synthase subunit epsilon; Provisional
 1-81 9.49e-12

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139576 [Multi-domain]  Cd Length: 127  Bit Score: 56.42  E-value: 9.49e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056   1 MASEFSLKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKEGSFKEAKIAEGFINVTQDKTVILT 80
Cdd:PRK13444   2 MAKKLTVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKGEKLKRISVEGGFCEVKDNQISILT 81


                 .
gi 489521056  81 E 81
Cdd:PRK13444  82 D 82
atpC PRK13451
F0F1 ATP synthase subunit epsilon; Provisional
 7-83 1.10e-11

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 172059  Cd Length: 101  Bit Score: 55.56  E-value: 1.10e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489521056   7 LKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKEGSFKEAKIAEGFINVTQDKTVILTESA 83
Cdd:PRK13451   3 VKIVTPYGIVYDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKSGDDEYEYKVADGFLHCDGKNVIIITEEA 79
atpE CHL00063
ATP synthase CF1 epsilon subunit
 7-84 1.19e-10

ATP synthase CF1 epsilon subunit


Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 53.33  E-value: 1.19e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489521056   7 LKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKEGSFKEAKIAEGFINVTQDKTVILTESAE 84
Cdd:CHL00063   5 LRVLTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRLNDQWLTMALMGGFARIGNNEITILVNDAE 82
atpC PRK14735
F0F1 ATP synthase subunit epsilon; Provisional
 7-84 4.99e-08

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173197 [Multi-domain]  Cd Length: 139  Bit Score: 46.92  E-value: 4.99e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489521056   7 LKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKEGSFKEAKIAEGFINVTQDKTVILTESAE 84
Cdd:PRK14735   5 LEIVTAERVVLSDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVKNGVRTPFAISGGFMEVLPHRVTILADTAE 82
atpC PRK13452
F0F1 ATP synthase subunit epsilon; Provisional
 5-84 6.40e-07

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 106409 [Multi-domain]  Cd Length: 145  Bit Score: 43.97  E-value: 6.40e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056   5 FSLKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKEGSFKEAKIAEGFINVTQDKTVILTESAE 84
Cdd:PRK13452   6 LKVDVVSPLGSVFKGEADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRKDQHTDVLYVSGGIVEVTPTRVTIMVDDME 85
atpC PRK13448
F0F1 ATP synthase subunit epsilon; Provisional
 1-83 4.27e-06

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139579 [Multi-domain]  Cd Length: 135  Bit Score: 41.68  E-value: 4.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056   1 MASeFSLKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKEGSFKEAKIAEGFINVTQDKTVILT 80
Cdd:PRK13448   1 MAT-FHFDLVSPEKLAFSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTAGGNQQKIVVLGGLAEVSEKGLTVLA 79


                 ...
gi 489521056  81 ESA 83
Cdd:PRK13448  80 DVA 82
atpC PRK01474
F0F1 ATP synthase subunit epsilon; Validated
 1-83 5.93e-03

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 100879  Cd Length: 112  Bit Score: 32.92  E-value: 5.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056   1 MASEFSLKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKEGSFKEAK---IAEGFINVTQDKTV 77
Cdd:PRK01474   1 MNETILVKIITPLSIAFEKQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYIDDMHKSENtylISGGVTEVTGNYIN 80


                 ....*.
gi 489521056  78 ILTESA 83
Cdd:PRK01474  81 IATETA 86
atpC PRK13443
F0F1 ATP synthase subunit epsilon; Provisional
 1-83 6.54e-03

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 237388 [Multi-domain]  Cd Length: 136  Bit Score: 33.36  E-value: 6.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489521056   1 MASEFSLKVVTPSNTFYDGDVEMIVVRTTKGDKGVLKGHIPFVSGIPVGTLKIKKEGSFKEAKIAEGFINVTQDKTVILT 80
Cdd:PRK13443   1 MAGTLQFDLVSPERRLASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSGTQEYAVTGGFAEINATSISVLA 80


                 ...
gi 489521056  81 ESA 83
Cdd:PRK13443  81 EKA 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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