|
Name |
Accession |
Description |
Interval |
E-value |
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
2-216 |
4.33e-92 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 271.94 E-value: 4.33e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDFE 81
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 82 FPSLYEKLTAIENLKYFGSLY--SKKLLS--IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTS 157
Cdd:COG1131 81 EPALYPDLTVRENLRFFARLYglPRKEARerIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTS 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 158 GLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLI 216
Cdd:COG1131 161 GLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELK 219
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
17-277 |
2.29e-76 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 234.59 E-value: 2.29e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDFEFPSLYEKLTAIENLK 96
Cdd:TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 97 YFGSLY--SKKLLS--IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIIL 172
Cdd:TIGR01188 89 MMGRLYglPKDEAEerAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIR 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 173 SEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMSKGAIKVRYTYFD-------NGEKTSECF------ 239
Cdd:TIGR01188 169 ALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDiqslkveVSMLIAELGetglgl 248
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 489525481 240 ----------------LNNTANDKnLNMLIEKN-KLLSIHSSEPTLNDIFIEITG 277
Cdd:TIGR01188 249 lavtvdsdrikilvpdGDETVPEI-VEAAIRNGiRIRSISTERPSLDDVFLKLTG 302
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
2-206 |
1.10e-70 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 215.34 E-value: 1.10e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDFE 81
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 82 FPSLYEKLTAIENLKYfgslyskkllsidellksvgleneankrvseySKGMKSRLNFIKALLHNPDILFLDEPTSGLDP 161
Cdd:cd03230 81 EPSLYENLTVRENLKL--------------------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDP 128
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 489525481 162 SNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:cd03230 129 ESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1-215 |
3.98e-70 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 216.65 E-value: 3.98e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDF 80
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGVLP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EFPSLYEKLTAIENLKYFGSLY----SKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPT 156
Cdd:COG4555 81 DERGLYDRLTVRENIRYFAELYglfdEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPT 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 157 SGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:COG4555 161 NGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDEL 219
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-279 |
5.87e-68 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 212.66 E-value: 5.87e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSnkfYENIGVDF 80
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPED---RRRIGYLP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EFPSLYEKLTAIENLKYFGSL--YSKK--LLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPT 156
Cdd:COG4152 78 EERGLYPKMKVGEQLVYLARLkgLSKAeaKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 157 SGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMSKGAIKVRYTYFDNGEKTS 236
Cdd:COG4152 158 SGLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFGRNTLRLEADGDAGWLR 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 237 ECF---------------LNNTANDKN-LNMLIEKNKLLSIHSSEPTLNDIFIEITGRN 279
Cdd:COG4152 238 ALPgvtvveedgdgaelkLEDGADAQElLRALLARGPVREFEEVRPSLNEIFIEVVGEK 296
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
2-215 |
8.07e-64 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 199.52 E-value: 8.07e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDFE 81
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 82 FPSLYEKLTAIENLKYFGSLY----SKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTS 157
Cdd:cd03265 81 DLSVDDELTGWENLYIHARLYgvpgAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 158 GLDP-SNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:cd03265 161 GLDPqTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
2-215 |
1.11e-61 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 194.26 E-value: 1.11e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDF--LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVD 79
Cdd:cd03263 1 LQIRNLTKTYKKGTKpaVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 FEFPSLYEKLTAIENLKYFGSLYSKKLLSIDE----LLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEP 155
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEevelLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 156 TSGLDPSNSKVMKDIILSEKsKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:cd03263 161 TSGLDPASRRAIWDLILEVR-KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
2-206 |
3.32e-61 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 192.50 E-value: 3.32e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGvesKRHSNKFYENIGVDFE 81
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG---KPLDIAARNRIGYLPE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 82 FPSLYEKLTAIENLKYFGSLYSKK----LLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTS 157
Cdd:cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKkeeaRRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFS 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 489525481 158 GLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:cd03269 158 GLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRA 206
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
2-206 |
9.45e-61 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 191.28 E-value: 9.45e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKfYENIGVDFE 81
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEA-LRRIGALIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 82 FPSLYEKLTAIENLKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDP 161
Cdd:cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 489525481 162 SNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:cd03268 160 DGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
2-218 |
2.61e-57 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 183.47 E-value: 2.61e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE----SKRHSNKFYENIG 77
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDisglSEAELYRLRRRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 78 VDFEFPSLYEKLTAIENLKYFgsLYSKKLLS---IDEL----LKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDIL 150
Cdd:cd03261 81 MLFQSGALFDSLTVFENVAFP--LREHTRLSeeeIREIvlekLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 151 FLDEPTSGLDPSNSKVMKDIILS-EKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMS 218
Cdd:cd03261 159 LYDEPTAGLDPIASGVIDDLIRSlKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-208 |
3.93e-53 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 172.17 E-value: 3.93e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDF----LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENI 76
Cdd:cd03266 1 MITADALTKRFRDVKKtvqaVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 77 GVDFEFPSLYEKLTAIENLKYFGSLYSKK----LLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFL 152
Cdd:cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKgdelTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 489525481 153 DEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISA 208
Cdd:cd03266 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-215 |
3.06e-52 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 170.55 E-value: 3.06e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE----SKRHSNKFYENI 76
Cdd:COG1127 5 MIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDitglSEKELYELRRRI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 77 GVDFEFPSLYEKLTAIEN----LKYFGSLySKKLlsIDEL----LKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPD 148
Cdd:COG1127 85 GMLFQGGALFDSLTVFENvafpLREHTDL-SEAE--IRELvlekLELVGLPGAADKMPSELSGGMRKRVALARALALDPE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489525481 149 ILFLDEPTSGLDPSNSKVMKDIILSEKSK-GKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:COG1127 162 ILLYDEPTAGLDPITSAVIDELIRELRDElGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEEL 229
|
|
| GldA_ABC_ATP |
TIGR03522 |
gliding motility-associated ABC transporter ATP-binding subunit GldA; Members of this protein ... |
2-276 |
3.99e-51 |
|
gliding motility-associated ABC transporter ATP-binding subunit GldA; Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Pssm-ID: 132561 [Multi-domain] Cd Length: 301 Bit Score: 169.57 E-value: 3.99e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDFE 81
Cdd:TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 82 FPSLYEKLTAIENLKYFGSLY----SKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTS 157
Cdd:TIGR03522 83 HNPLYLDMYVREYLQFIAGIYgmkgQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 158 GLDPSNSKVMKDIIlSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIM--SKGAIKVRYTY------- 228
Cdd:TIGR03522 163 GLDPNQLVEIRNVI-KNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAanKKQVIEVEFEEqidlqlf 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 229 --FDN-------GEKTSECFLNNTANDKNLNM-LIEKN--KLLSIHSSEPTLNDIFIEIT 276
Cdd:TIGR03522 242 etLEEissvkntGGNTWKLTFETPNDTRPEIFkLAQQKglKLISLQQNEKNLEQVFREIT 301
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
2-206 |
7.97e-51 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 166.13 E-value: 7.97e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDF----LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFY---- 73
Cdd:cd03255 1 IELKNLSKTYGGGGEkvqaLKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELaafr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 74 -ENIGVDFEFPSLYEKLTAIEN----LKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPD 148
Cdd:cd03255 81 rRHIGFVFQSFNLLPDLTALENvelpLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 149 ILFLDEPTSGLDPSNSKVMKDIILSE-KSKGKTIILTTHNMlDATELCDRVAFIVNGKI 206
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELnKEAGTTIVVVTHDP-ELAEYADRIIELRDGKI 218
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-281 |
1.67e-49 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 166.54 E-value: 1.67e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDFE 81
Cdd:PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQ 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 82 FPSLYEKLTAIENLKYFGSLYSKKLLSIDE----LLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTS 157
Cdd:PRK13536 122 FDNLDLEFTVRENLLVFGRYFGMSTREIEAvipsLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 158 GLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMSKGAIKVRYTYFDNG----- 232
Cdd:PRK13536 202 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEIYGGDPhelss 281
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 489525481 233 ---------EKTSECFLNNTANDKNLNMLIEKNKLLSIHSSEPTLNDIFIEITGRNLQ 281
Cdd:PRK13536 282 lvkpyarriEVSGETLFCYAPDPEQVRVQLRGRAGLRLLQRPPNLEDVFLRLTGREME 339
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
4-206 |
2.41e-49 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 162.57 E-value: 2.41e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 4 VDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSnkfYENIGVDFEFP 83
Cdd:TIGR03740 3 TKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD---LHKIGSLIESP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 84 SLYEKLTAIENLKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSN 163
Cdd:TIGR03740 80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG 159
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 489525481 164 SKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:TIGR03740 160 IQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVL 202
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
2-206 |
4.62e-49 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 161.59 E-value: 4.62e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGeILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGV--- 78
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYlpq 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFpslYEKLTAIENLKYFGSLY---SKKLLS-IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDE 154
Cdd:cd03264 80 EFGV---YPNFTVREFLDYIAWLKgipSKEVKArVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 489525481 155 PTSGLDPSNSKVMKDiILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:cd03264 157 PTAGLDPEERIRFRN-LLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKL 207
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
2-217 |
2.29e-48 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 160.19 E-value: 2.29e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDF-LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-SKRHSNKFYENIGVD 79
Cdd:COG1122 1 IELENLSFSYPGGTPaLDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDiTKKNLRELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 FEFP-------SLYEKLT-AIENLKyfgslYSKKLLS--IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDI 149
Cdd:COG1122 81 FQNPddqlfapTVEEDVAfGPENLG-----LPREEIRerVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEV 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489525481 150 LFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIM 217
Cdd:COG1122 156 LVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFS 223
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-281 |
5.08e-48 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 161.90 E-value: 5.08e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDFE 81
Cdd:PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 82 FPSLYEKLTAIENLKYFGSLYSKKLLSIDE----LLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTS 157
Cdd:PRK13537 88 FDNLDPDFTVRENLLVFGRYFGLSAAAARAlvppLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 158 GLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMSKGAIKVRYTYFDN------ 231
Cdd:PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIEIYGPDpvalrd 247
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 232 ------------GEkTSECFLNNTAndKNLNMLIEKNKLLSIHSSePTLNDIFIEITGRNLQ 281
Cdd:PRK13537 248 elaplaerteisGE-TLFCYVRDPE--PLHARLKGRAGLRYLHRP-ANLEDVFLRLTGREMQ 305
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
4-208 |
6.58e-48 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 158.47 E-value: 6.58e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 4 VDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKF-Y--ENIGVDF 80
Cdd:cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIgYvpQRRSIDR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EFP-SLYE-KLTAIENLKYFGSLYSKKLLS-IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTS 157
Cdd:cd03235 82 DFPiSVRDvVLMGLYGHKGLFRRLSKADKAkVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 489525481 158 GLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIvNGKISA 208
Cdd:cd03235 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL-NRTVVA 211
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-213 |
1.03e-47 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 159.10 E-value: 1.03e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKfyenIG--- 77
Cdd:COG1121 6 AIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRARRR----IGyvp 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 78 ----VDFEFPslyekLTAIE--------NLKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLH 145
Cdd:COG1121 82 qraeVDWDFP-----ITVRDvvlmgrygRRGLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQ 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489525481 146 NPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIvNGKISALDTPH 213
Cdd:COG1121 157 DPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLL-NRGLVAHGPPE 223
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-186 |
5.70e-47 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 156.10 E-value: 5.70e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDF 80
Cdd:COG4133 2 MLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAYLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EFPSLYEKLTAIENLKYFGSLYSKKL--LSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSG 158
Cdd:COG4133 82 HADGLKPELTVRENLRFWAALYGLRAdrEAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTA 161
|
170 180
....*....|....*....|....*...
gi 489525481 159 LDPSNSKVMKDIILSEKSKGKTIILTTH 186
Cdd:COG4133 162 LDAAGVALLAELIAAHLARGGAVLLTTH 189
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
2-206 |
7.72e-46 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 154.03 E-value: 7.72e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSY-----------TDRDF----------LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIV 60
Cdd:cd03267 1 IEVSNLSKSYrvyskepgligSLKSLfkrkyreveaLKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 61 NGVESKRHSNKFYENIGVDF--------EFPSL--YEKLTAIENLKYFGslYSKKLLSIDELLKsvgLENEANKRVSEYS 130
Cdd:cd03267 81 AGLVPWKRRKKFLRRIGVVFgqktqlwwDLPVIdsFYLLAAIYDLPPAR--FKKRLDELSELLD---LEELLDTPVRQLS 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 131 KGMKSRLNFIKALLHNPDILFLDEPTSGLD-PSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:cd03267 156 LGQRMRAEIAAALLHEPEILFLDEPTIGLDvVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-208 |
1.28e-45 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 153.28 E-value: 1.28e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDF----LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE----SKRHSNKF 72
Cdd:COG1136 4 LLELRNLTKSYGTGEGevtaLRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDisslSERELARL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 73 -YENIGVDFEFPSLYEKLTAIEN----LKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNP 147
Cdd:COG1136 84 rRRHIGFVFQFFNLLPELTALENvalpLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489525481 148 DILFLDEPTSGLDPSNSK-VMKdiILSE--KSKGKTIILTTHNMlDATELCDRVAFIVNGKISA 208
Cdd:COG1136 164 KLILADEPTGNLDSKTGEeVLE--LLRElnRELGTTIVMVTHDP-ELAARADRVIRLRDGRIVS 224
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
4-205 |
4.84e-45 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 151.08 E-value: 4.84e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 4 VDDLSFSYTDRDF--LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-SKRHSNKFYENIGVDF 80
Cdd:cd03225 2 LKNLSFSYPDGARpaLDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDlTKLSLKELRRKVGLVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EFP-------SLYEKLT-AIENLKYFGSLYSKKllsIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFL 152
Cdd:cd03225 82 QNPddqffgpTVEEEVAfGLENLGLPEEEIEER---VEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 489525481 153 DEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGK 205
Cdd:cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-206 |
1.19e-44 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 153.32 E-value: 1.19e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSY-----------TDRDF----------LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVI 59
Cdd:COG4586 1 IIEVENLSKTYrvyekepglkgALKGLfrreyreveaVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 60 VNGVESKRHSNKFYENIGVDFEFPS-LYEKLTAIENLKYFGSLYS------KKLLsiDELLKSVGLENEANKRVSEYSKG 132
Cdd:COG4586 81 VLGYVPFKRRKEFARRIGVVFGQRSqLWWDLPAIDSFRLLKAIYRipdaeyKKRL--DELVELLDLGELLDTPVRQLSLG 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 133 MKSRLNFIKALLHNPDILFLDEPTSGLDPsnskVMKDII---LSE--KSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:COG4586 159 QRMRCELAAALLHRPKILFLDEPTIGLDV----VSKEAIrefLKEynRERGTTILLTSHDMDDIEALCDRVIVIDHGRI 233
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
2-199 |
2.44e-43 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 147.23 E-value: 2.44e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDF----LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKfyenIG 77
Cdd:cd03293 1 LEVRNVSKTYGGGGGavtaLEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPD----RG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 78 VDFEFPSLYEKLTAIEN----LKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLD 153
Cdd:cd03293 77 YVFQQDALLPWLTVLDNvalgLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 489525481 154 EPTSGLDPSNSKVMKDIILSEKSK-GKTIILTTHNMLDATELCDRVA 199
Cdd:cd03293 157 EPFSALDALTREQLQEELLDIWREtGKTVLLVTHDIDEAVFLADRVV 203
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
3-205 |
9.07e-42 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 140.84 E-value: 9.07e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 3 TVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKfyenigvdfef 82
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLE----------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 83 pslyekltaienlkyfgslyskkllsidELLKSVGLeneankrVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPS 162
Cdd:cd00267 70 ----------------------------ELRRRIGY-------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA 114
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 489525481 163 NSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGK 205
Cdd:cd00267 115 SRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
2-206 |
4.18e-41 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 141.12 E-value: 4.18e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE------SKRhsnkfyeN 75
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDvtgvppERR-------N 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 76 IGVDFEFPSLYEKLTAIENLKYfgSLYSKKLLS------IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDI 149
Cdd:cd03259 74 IGMVFQDYALFPHLTVAENIAF--GLKLRGVPKaeirarVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489525481 150 LFLDEPTSGLDPSNSKVM----KDIIlseKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:cd03259 152 LLLDEPLSALDAKLREELreelKELQ---RELGITTIYVTHDQEEALALADRIAVMNEGRI 209
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-206 |
2.60e-40 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 139.64 E-value: 2.60e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDF----LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNK----F 72
Cdd:cd03258 1 MIELKNVSKVFGDTGGkvtaLKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKelrkA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 73 YENIGVDFEFPSLYEKLTAIEN----LKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPD 148
Cdd:cd03258 81 RRRIGMIFQHFNLLSSRTVFENvalpLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 149 ILFLDEPTSGLDPSNS----KVMKDIilsEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:cd03258 161 VLLCDEATSALDPETTqsilALLRDI---NRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
2-205 |
4.94e-40 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 137.32 E-value: 4.94e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSN---KFYENIGV 78
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDelpPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFPSLYEKLTAIENLKYfgslyskkllsidellksvGLeneankrvseySKGMKSRLNFIKALLHNPDILFLDEPTSG 158
Cdd:cd03229 81 VFQDFALFPHLTVLENIAL-------------------GL-----------SGGQQQRVALARALAMDPDVLLLDEPTSA 130
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 489525481 159 LDPSNSKVMKDIILSEKSK-GKTIILTTHNMLDATELCDRVAFIVNGK 205
Cdd:cd03229 131 LDPITRREVRALLKSLQAQlGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
2-206 |
6.12e-40 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 138.03 E-value: 6.12e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNG-------VESKRH------ 68
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGkplsampPPEWRRqvayvp 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 69 --SNKFYENIGVDFEFPSLYEKLTAIENLkyfgslyskkllsIDELLKSVGLENEA-NKRVSEYSKGMKSRLNFIKALLH 145
Cdd:COG4619 81 qePALWGGTVRDNLPFPFQLRERKFDRER-------------ALELLERLGLPPDIlDKPVERLSGGERQRLALIRALLL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 146 NPDILFLDEPTSGLDPSNSKVMKDIILSE-KSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:COG4619 148 QPDVLLLDEPTSALDPENTRRVEELLREYlAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-198 |
7.45e-40 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 139.07 E-value: 7.45e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDF----LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKfyenI 76
Cdd:COG1116 7 ALELRGVSKRFPTGGGgvtaLDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPD----R 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 77 GVDFEFPSLYEKLTAIEN----LKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFL 152
Cdd:COG1116 83 GVVFQEPALLPWLTVLDNvalgLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLLM 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 489525481 153 DEPTSGLDPSNSKVMKDIILSE-KSKGKTIILTTHNMLDATELCDRV 198
Cdd:COG1116 163 DEPFGALDALTRERLQDELLRLwQETGKTVLFVTHDVDEAVFLADRV 209
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
2-206 |
1.57e-39 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 136.89 E-value: 1.57e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE---SKRHSNKFYENIGV 78
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKltdDKKNINELRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFPSLYEKLTAIENLKyFGSLYSKKLLSID------ELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFL 152
Cdd:cd03262 81 VFQQFNLFPHLTVLENIT-LAPIKVKGMSKAEaeeralELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 489525481 153 DEPTSGLDPSNSK----VMKDIilseKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:cd03262 160 DEPTSALDPELVGevldVMKDL----AEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
1-206 |
1.73e-39 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 137.81 E-value: 1.73e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSY-TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE----SKRHSNKFYEN 75
Cdd:TIGR02315 1 MLEVENLSKVYpNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDitklRGKKLRKLRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 76 IGVDFEFPSLYEKLTAIENL------------KYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKAL 143
Cdd:TIGR02315 81 IGMIFQHYNLIERLTVLENVlhgrlgykptwrSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489525481 144 LHNPDILFLDEPTSGLDPSNSK-VMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:TIGR02315 161 AQQPDLILADEPIASLDPKTSKqVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1-206 |
5.60e-39 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 136.10 E-value: 5.60e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDF----LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE----SKRHSNKF 72
Cdd:cd03257 1 LLEVKNLSVSFPTGGGsvkaLDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDllklSRRLRKIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 73 YENIGVDFEFP--SLYEKLTA----IENLKYFGSLYSKKLLS--IDELLKSVGLENE-ANKRVSEYSKGMKSRLNFIKAL 143
Cdd:cd03257 81 RKEIQMVFQDPmsSLNPRMTIgeqiAEPLRIHGKLSKKEARKeaVLLLLVGVGLPEEvLNRYPHELSGGQRQRVAIARAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489525481 144 LHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSK-GKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEElGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1-216 |
5.86e-39 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 136.71 E-value: 5.86e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNK-FYENIGVD 79
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRReLARRIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 FEFPSLYEKLTAIE--------NLKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILF 151
Cdd:COG1120 81 PQEPPAPFGLTVRElvalgrypHLGLFGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489525481 152 LDEPTSGLDPSNS-KVMKdiILSE--KSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLI 216
Cdd:COG1120 161 LDEPTSHLDLAHQlEVLE--LLRRlaRERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVL 226
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
2-206 |
7.21e-39 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 135.77 E-value: 7.21e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYG-----GSVIVNGVESKRHSNKFYE-- 74
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPgapdeGEVLLDGKDIYDLDVDVLElr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 -NIGVDFEFPSLYEKlTAIEN----LKYFGSLYSKKLLSIDE-LLKSVGLENEANKRVSEY--SKGMKSRLNFIKALLHN 146
Cdd:cd03260 81 rRVGMVFQKPNPFPG-SIYDNvaygLRLHGIKLKEELDERVEeALRKAALWDEVKDRLHALglSGGQQQRLCLARALANE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 147 PDILFLDEPTSGLDPSNSKVMKDIILsEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:cd03260 160 PEVLLLDEPTSALDPISTAKIEELIA-ELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
1-212 |
1.38e-38 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 135.57 E-value: 1.38e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDF-LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE----SKRHSNKFYEN 75
Cdd:COG3638 2 MLELRNLSKRYPGGTPaLDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDvtalRGRALRRLRRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 76 IGVDFEFPSLYEKLTAIEN-----------LKYFGSLYSKKLLSI-DELLKSVGLENEANKRVSEYSKGMKSRLNFIKAL 143
Cdd:COG3638 82 IGMIFQQFNLVPRLSVLTNvlagrlgrtstWRSLLGLFPPEDRERaLEALERVGLADKAYQRADQLSGGQQQRVAIARAL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489525481 144 LHNPDILFLDEPTSGLDPSNSK-VMKDiiLSE--KSKGKTIILTTHNmLD-ATELCDRVAFIVNGKIsALDTP 212
Cdd:COG3638 162 VQEPKLILADEPVASLDPKTARqVMDL--LRRiaREDGITVVVNLHQ-VDlARRYADRIIGLRDGRV-VFDGP 230
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1-206 |
2.75e-38 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 134.02 E-value: 2.75e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSY-TDRDFLQNINFEVGKGEILgFL-GPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNK---FY-E 74
Cdd:COG2884 1 MIRFENVSKRYpGGREALSDVSLEIEKGEFV-FLtGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRReipYLrR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 NIGV---DFefpSLYEKLTAIEN----LKYFGslYSKKLLS--IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLH 145
Cdd:COG2884 80 RIGVvfqDF---RLLPDRTVYENvalpLRVTG--KSRKEIRrrVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVN 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 146 NPDILFLDEPTSGLDPSNS-KVMKdiILSE-KSKGKTIILTTHNMldatELCD----RVAFIVNGKI 206
Cdd:COG2884 155 RPELLLADEPTGNLDPETSwEIME--LLEEiNRRGTTVLIATHDL----ELVDrmpkRVLELEDGRL 215
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-206 |
3.59e-38 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 134.55 E-value: 3.59e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSY----TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-SKRHSNKFYEN 75
Cdd:COG1124 1 MLEVRNLSVSYgqggRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPvTRRRRKAFRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 76 IGVDFEFP--SLYEKLT---AI-ENLKYFGSLYSKKllSIDELLKSVGLENE-ANKRVSEYSKGMKSRLNFIKALLHNPD 148
Cdd:COG1124 81 VQMVFQDPyaSLHPRHTvdrILaEPLRIHGLPDREE--RIAELLEQVGLPPSfLDRYPHQLSGGQRQRVAIARALILEPE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 149 ILFLDEPTSGLDPSNSK----VMKDIIlseKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:COG1124 159 LLLLDEPTSALDVSVQAeilnLLKDLR---EERGLTYLFVSHDLAVVAHLCDRVAVMQNGRI 217
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
3-208 |
3.63e-38 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 132.56 E-value: 3.63e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 3 TVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKfyenigvdfEF 82
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK---------EL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 83 pslyekltaienlkyfgslySKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPS 162
Cdd:cd03214 72 --------------------ARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIA 131
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 489525481 163 NS-KVMKdiILSE--KSKGKTIILTTHNMLDATELCDRVAFIVNGKISA 208
Cdd:cd03214 132 HQiELLE--LLRRlaRERGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
2-206 |
3.88e-38 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 134.23 E-value: 3.88e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSY-TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE----SKRHSNKFYENI 76
Cdd:cd03256 1 IEVENLSKTYpNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDinklKGKALRQLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 77 GVDFEFPSLYEKLTAIEN-----------LKYFGSLYSK--KLLSIdELLKSVGLENEANKRVSEYSKGMKSRLNFIKAL 143
Cdd:cd03256 81 GMIFQQFNLIERLSVLENvlsgrlgrrstWRSLFGLFPKeeKQRAL-AALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489525481 144 LHNPDILFLDEPTSGLDPSNSK-VMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:cd03256 160 MQQPKLILADEPVASLDPASSRqVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-206 |
2.26e-37 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 134.82 E-value: 2.26e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLS--FSYTDRDF--LQNINFEVGKGEILGFLGPSGAGKSTlqkiLIGMItNY-----GGSVIVNGVE----SKR 67
Cdd:COG1135 1 MIELENLSktFPTKGGPVtaLDDVSLTIEKGEIFGIIGYSGAGKST----LIRCI-NLlerptSGSVLVDGVDltalSER 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 68 HSNKFYENIGVDFEFPSLYEKLTAIEN----LKYFGslYSKKllSI----DELLKSVGLENEANKRVSEYSKGMKSRLNF 139
Cdd:COG1135 76 ELRAARRKIGMIFQHFNLLSSRTVAENvalpLEIAG--VPKA--EIrkrvAELLELVGLSDKADAYPSQLSGGQKQRVGI 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489525481 140 IKALLHNPDILFLDEPTSGLDPSNSK----VMKDIilsEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:COG1135 152 ARALANNPKVLLCDEATSALDPETTRsildLLKDI---NRELGLTIVLITHEMDVVRRICDRVAVLENGRI 219
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-216 |
2.93e-37 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 137.73 E-value: 2.93e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDF-----LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE----SKRHSNK 71
Cdd:COG1123 260 LLEVRNLSKRYPVRGKggvraVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDltklSRRSLRE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 72 FYENIGVDFEFP--SLYEKLTA----IENLKYFGSLYSKKLLS-IDELLKSVGLENE-ANKRVSEYSKGMKSRLNFIKAL 143
Cdd:COG1123 340 LRRRVQMVFQDPysSLNPRMTVgdiiAEPLRLHGLLSRAERRErVAELLERVGLPPDlADRYPHELSGGQRQRVAIARAL 419
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489525481 144 LHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSK-GKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLI 216
Cdd:COG1123 420 ALEPKLLILDEPTSALDVSVQAQILNLLRDLQRElGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVF 493
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1-206 |
4.06e-37 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 131.65 E-value: 4.06e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE---SKRHSNKFYENIG 77
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDltdSKKDINKLRRKVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 78 VDFEFPSLYEKLTAIENLKYfGSLYSKKlLSIDE-------LLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDIL 150
Cdd:COG1126 81 MVFQQFNLFPHLTVLENVTL-APIKVKK-MSKAEaeerameLLERVGLADKADAYPAQLSGGQQQRVAIARALAMEPKVM 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 151 FLDEPTSGLDPSNSK----VMKDIilseKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:COG1126 159 LFDEPTSALDPELVGevldVMRDL----AKEGMTMVVVTHEMGFAREVADRVVFMDGGRI 214
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
3-206 |
1.51e-36 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 128.91 E-value: 1.51e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 3 TVDDLSFSYTDRDF-LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGV---ESKRHSNKFY--ENI 76
Cdd:cd03226 1 RIENISFSYKKGTEiLDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKpikAKERRKSIGYvmQDV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 77 GVDFEFPSLYEKLTaiENLKyfgsLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPT 156
Cdd:cd03226 81 DYQLFTDSVREELL--LGLK----ELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 489525481 157 SGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:cd03226 155 SGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
17-213 |
2.88e-36 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 129.09 E-value: 2.88e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHsnKFYE----NIGVDFEFPSLYEKLTAI 92
Cdd:cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGL--PPHEiarlGIGRTFQIPRLFPELTVL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 93 ENL---------KYFGSLYSKKLLS-----IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSG 158
Cdd:cd03219 94 ENVmvaaqartgSGLLLARARREERearerAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAG 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 489525481 159 LDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPH 213
Cdd:cd03219 174 LNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPD 228
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-216 |
1.03e-35 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 133.49 E-value: 1.03e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDF--LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYG---GSVIVNGVESKRHSNKFY-E 74
Cdd:COG1123 4 LLEVRDLSVRYPGGDVpaVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGrisGEVLLDGRDLLELSEALRgR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 NIGVDFEFP--SL------YEKLTAIENLKYFGSLYSKKllsIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHN 146
Cdd:COG1123 84 RIGMVFQDPmtQLnpvtvgDQIAEALENLGLSRAEARAR---VLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489525481 147 PDILFLDEPTSGLDPSNSK-VMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLI 216
Cdd:COG1123 161 PDLLIADEPTTALDVTTQAeILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEIL 231
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-221 |
6.29e-35 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 133.04 E-value: 6.29e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRD--FLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFY-ENIGV 78
Cdd:COG2274 474 IELENVSFRYPGDSppVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASLrRQIGV 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 ---DfefPSLYEKlTAIENLKYFGSLYSKKllSIDELLKSVGLENEANK-------RVSE----YSKGMKSRLNFIKALL 144
Cdd:COG2274 554 vlqD---VFLFSG-TIRENITLGDPDATDE--EIIEAARLAGLHDFIEAlpmgydtVVGEggsnLSGGQRQRLAIARALL 627
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 145 HNPDILFLDEPTSGLDPSNSKVMKDiILSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISALDTPHNLIMSKGA 221
Cdd:COG2274 628 RNPRILILDEATSALDAETEAIILE-NLRRLLKGRTVIIIAHR-LSTIRLADRIIVLDKGRIVEDGTHEELLARKGL 702
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
6-201 |
6.74e-35 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 124.65 E-value: 6.74e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 6 DLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNK-----FYENIGVDF 80
Cdd:TIGR03608 3 NISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKkaskfRREKLGYLF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EFPSLYEKLTAIENLKyFGSLYSK-----KLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEP 155
Cdd:TIGR03608 83 QNFALIENETVEENLD-LGLKYKKlskkeKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEP 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 489525481 156 TSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLdATELCDRVAFI 201
Cdd:TIGR03608 162 TGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-VAKQADRVIEL 206
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
2-215 |
2.33e-34 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 125.26 E-value: 2.33e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYT-----DRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGV----ESKRHSNKF 72
Cdd:TIGR04521 1 IKLKNVSYIYQpgtpfEKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRditaKKKKKLKDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 73 YENIGVDFEFPS--LYEKlTAIENLKY----FGslYSKK--LLSIDELLKSVGLEnEANKRVS--EYSKGMKSRLNFIKA 142
Cdd:TIGR04521 81 RKKVGLVFQFPEhqLFEE-TVYKDIAFgpknLG--LSEEeaEERVKEALELVGLD-EEYLERSpfELSGGQMRRVAIAGV 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489525481 143 LLHNPDILFLDEPTSGLDPSNSKVMKDIILS-EKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:TIGR04521 157 LAMEPEVLILDEPTAGLDPKGRKEILDLFKRlHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREV 230
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
2-215 |
2.38e-34 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 127.19 E-value: 2.38e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNG--VESKRHSNKfyENIGVD 79
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGrdLFTNLPPRE--RRVGFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 FEFPSLYEKLTAIENLKyFGsLySKKLLS-------IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFL 152
Cdd:COG1118 81 FQHYALFPHMTVAENIA-FG-L-RVRPPSkaeirarVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEVLLL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 153 DEPTSGLDpsnSKVMKDI------ILSEksKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:COG1118 158 DEPFGALD---AKVRKELrrwlrrLHDE--LGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEV 221
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
2-218 |
2.80e-34 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 124.34 E-value: 2.80e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDF-LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNG--------VESKRHSNKF 72
Cdd:cd03295 1 IEFENVTKRYGGGKKaVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGedireqdpVELRRKIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 73 YENIGVdfeFPslyeKLTAIEN----LKYFGSLYSKKLLSIDELLKSVGLENE--ANKRVSEYSKGMKSRLNFIKALLHN 146
Cdd:cd03295 81 IQQIGL---FP----HMTVEENialvPKLLKWPKEKIRERADELLALVGLDPAefADRYPHELSGGQQQRVGVARALAAD 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489525481 147 PDILFLDEPTSGLDP-SNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMS 218
Cdd:cd03295 154 PPLLLMDEPFGALDPiTRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
17-206 |
3.85e-34 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 123.41 E-value: 3.85e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGveskRHSNKFYENIGVDFEfpslyekLTAIENLK 96
Cdd:cd03220 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG----RVSSLLGLGGGFNPE-------LTGRENIY 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 97 YFGSLYSKKLLSIDELLKSV----GLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIIL 172
Cdd:cd03220 107 LNGRLLGLSRKEIDEKIDEIiefsELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLR 186
|
170 180 190
....*....|....*....|....*....|....
gi 489525481 173 SEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:cd03220 187 ELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKI 220
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
2-205 |
7.97e-34 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 120.95 E-value: 7.97e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRD--FLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHS-NKFYENIGV 78
Cdd:cd03228 1 IEFKNVSFSYPGRPkpVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDlESLRKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFPSLYEkltaienlkyfGSLYskkllsiDELLksvgleneankrvseySKGMKSRLNFIKALLHNPDILFLDEPTSG 158
Cdd:cd03228 81 VPQDPFLFS-----------GTIR-------ENIL----------------SGGQRQRIAIARALLRDPPILILDEATSA 126
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 489525481 159 LDPSNSKVMKDIILsEKSKGKTIILTTHNmLDATELCDRVAFIVNGK 205
Cdd:cd03228 127 LDPETEALILEALR-ALAKGKTVIVIAHR-LSTIRDADRIIVLDDGR 171
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
17-205 |
3.96e-33 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 126.29 E-value: 3.96e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE----SKRHSNKFyeNIGVDFEFPSLYEKLTAI 92
Cdd:COG3845 21 NDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPvrirSPRDAIAL--GIGMVHQHFMLVPNLTVA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 93 ENL-----KYFGSLYSKKLLS--IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSK 165
Cdd:COG3845 99 ENIvlglePTKGGRLDRKAARarIRELSERYGLDVDPDAKVEDLSVGEQQRVEILKALYRGARILILDEPTAVLTPQEAD 178
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 489525481 166 VMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGK 205
Cdd:COG3845 179 ELFEILRRLAAEGKSIIFITHKLREVMAIADRVTVLRRGK 218
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-215 |
8.29e-33 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 122.90 E-value: 8.29e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE------SKRhsnkfye 74
Cdd:COG3842 5 ALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDvtglppEKR------- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 NIGVDFE----FPSlyekLTAIENLKYfgSLYSKKL------LSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALL 144
Cdd:COG3842 78 NVGMVFQdyalFPH----LTVAENVAF--GLRMRGVpkaeirARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489525481 145 HNPDILFLDEPTSGLDPSNSKVM----KDIIlseKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:COG3842 152 PEPRVLLLDEPLSALDAKLREEMreelRRLQ---RELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEI 223
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1-208 |
9.46e-33 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 119.86 E-value: 9.46e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYtdRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE------SKR------- 67
Cdd:COG3840 1 MLRLDDLTYRY--GDFPLRFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDltalppAERpvsmlfq 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 68 HSNKF-----YENIGVDFEfPSLyeKLTAIENLKyfgslyskkllsIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKA 142
Cdd:COG3840 79 ENNLFphltvAQNIGLGLR-PGL--KLTAEQRAQ------------VEQALERVGLAGLLDRLPGQLSGGQRQRVALARC 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489525481 143 LLHNPDILFLDEPTSGLDPSNSKVMKDIIlSE--KSKGKTIILTTHNMLDATELCDRVAFIVNGKISA 208
Cdd:COG3840 144 LVRKRPILLLDEPFSALDPALRQEMLDLV-DElcRERGLTVLMVTHDPEDAARIADRVLLVADGRIAA 210
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-220 |
1.32e-32 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 125.64 E-value: 1.32e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDF-LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKrhsnkfyenigvDF 80
Cdd:COG4988 337 IELEDVSFSYPGGRPaLDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLS------------DL 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EFPSLYEKLTAI------------ENLkyfgsLYSKKLLSIDEL---LKSVGLENEANK-------RVSEY----SKGMK 134
Cdd:COG4988 405 DPASWRRQIAWVpqnpylfagtirENL-----RLGRPDASDEELeaaLEAAGLDEFVAAlpdgldtPLGEGgrglSGGQA 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 135 SRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIILsEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISALDTPHN 214
Cdd:COG4988 480 QRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALR-RLAKGRTVILITHR-LALLAQADRILVLDDGRIVEQGTHEE 557
|
....*.
gi 489525481 215 LIMSKG 220
Cdd:COG4988 558 LLAKNG 563
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
17-157 |
2.25e-32 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 116.59 E-value: 2.25e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYE-NIGVDFEFPSLYEKLTAIENL 95
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRkEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 96 KYFGSL--YSKKLLS--IDELLKSVGLENEANKRV----SEYSKGMKSRLNFIKALLHNPDILFLDEPTS 157
Cdd:pfam00005 81 RLGLLLkgLSKREKDarAEEALEKLGLGDLADRPVgerpGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
17-218 |
2.36e-32 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 120.06 E-value: 2.36e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYEN-----IGVDFEFPSLYEKLTA 91
Cdd:cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRElrrkkISMVFQSFALLPHRTV 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 92 IENLKY----FGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVM 167
Cdd:cd03294 120 LENVAFglevQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREM 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 489525481 168 KDIILS-EKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMS 218
Cdd:cd03294 200 QDELLRlQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
17-206 |
4.31e-32 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 123.59 E-value: 4.31e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDF---EFpSLYEKLTAIE 93
Cdd:COG1129 20 LDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAGIAIihqEL-NLVPNLSVAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 94 NLkYFGSLYSKKLLsID---------ELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNS 164
Cdd:COG1129 99 NI-FLGREPRRGGL-IDwramrrrarELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARVLILDEPTASLTEREV 176
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 489525481 165 KVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:COG1129 177 ERLFRIIRRLKAQGVAIIYISHRLDEVFEIADRVTVLRDGRL 218
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-212 |
1.67e-31 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 117.10 E-value: 1.67e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSY--------------------TDRDF--LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSV 58
Cdd:COG1134 4 MIEVENVSKSYrlyhepsrslkelllrrrrtRREEFwaLKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 59 IVNG-----VEskrhsnkfyenIGVDFEfPSlyekLTAIENLKYFGSLYSKKLLSIDELLKSV----GLENEANKRVSEY 129
Cdd:COG1134 84 EVNGrvsalLE-----------LGAGFH-PE----LTGRENIYLNGRLLGLSRKEIDEKFDEIvefaELGDFIDQPVKTY 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 130 SKGMKSRLNFikAL-LH-NPDILFLDEPTSGLDPS-NSKVMkDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:COG1134 148 SSGMRARLAF--AVaTAvDPDILLVDEVLAVGDAAfQKKCL-ARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRL 224
|
....*.
gi 489525481 207 SALDTP 212
Cdd:COG1134 225 VMDGDP 230
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-221 |
2.58e-31 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 121.80 E-value: 2.58e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDF--LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNK-FYENIGV 78
Cdd:COG4987 334 LELEDVSFRYPGAGRpvLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDdLRRRIAV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFPSLYEklTAI-ENLkyfgsLYSKKLLSIDEL---LKSVGLENEANK-------RVSEY----SKGMKSRLNFIKAL 143
Cdd:COG4987 414 VPQRPHLFD--TTLrENL-----RLARPDATDEELwaaLERVGLGDWLAAlpdgldtWLGEGgrrlSGGERRRLALARAL 486
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 144 LHNPDILFLDEPTSGLDPSNSK-VMKDiiLSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISALDTPHNLIMSKGA 221
Cdd:COG4987 487 LRDAPILLLDEPTEGLDAATEQaLLAD--LLEALAGRTVLLITHR-LAGLERMDRILVLEDGRIVEQGTHEELLAQNGR 562
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
19-221 |
3.89e-31 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 122.16 E-value: 3.89e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 19 NINFEVGKGEILGFLGPSGAGKSTLQKILIGMI-------TNYGGSVIVNGVESKRH----SNKFyenigvdfefpSLYE 87
Cdd:NF033858 284 HVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLpasegeaWLFGQPVDAGDIATRRRvgymSQAF-----------SLYG 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 88 KLTAIENLKYFGSLYSkklLS-------IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLD 160
Cdd:NF033858 353 ELTVRQNLELHARLFH---LPaaeiaarVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVD 429
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 161 PsnskVMKD------IILSEKsKGKTIILTTHNMLDAtELCDRVAFIVNGKISALDTPHNLIMSKGA 221
Cdd:NF033858 430 P----VARDmfwrllIELSRE-DGVTIFISTHFMNEA-ERCDRISLMHAGRVLASDTPAALVAARGA 490
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
2-228 |
5.95e-31 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 115.33 E-value: 5.95e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-SKRHsnkFYE----NI 76
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDiTKLP---MHKrarlGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 77 GVDFEFPSLYEKLTAIEN----LKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFL 152
Cdd:cd03218 78 GYLPQEASIFRKLTVEENilavLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489525481 153 DEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMSKgaiKVRYTY 228
Cdd:cd03218 158 DEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANE---LVRKVY 230
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
2-206 |
1.28e-30 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 112.69 E-value: 1.28e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSY--TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKR-HSNKFYENIGV 78
Cdd:cd03246 1 LEVENVSFRYpgAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQwDPNELGDHVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 dfefpslyekltaienlkyfgslyskkLLSIDELLKSVGLENeankrvsEYSKGMKSRLNFIKALLHNPDILFLDEPTSG 158
Cdd:cd03246 81 ---------------------------LPQDDELFSGSIAEN-------ILSGGQRQRLGLARALYGNPRILVLDEPNSH 126
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 489525481 159 LDPSNSKVMKDIILSEKSKGKTIILTTHNMlDATELCDRVAFIVNGKI 206
Cdd:cd03246 127 LDVEGERALNQAIAALKAAGATRIVIAHRP-ETLASADRILVLEDGRV 173
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1-216 |
2.81e-30 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 113.65 E-value: 2.81e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVeSKRHSNKFYENI---- 76
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGL-KVNDPKVDERLIrqea 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 77 GVDFEFPSLYEKLTAIENLKyFGSLYSKKLLSID------ELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDIL 150
Cdd:PRK09493 80 GMVFQQFYLFPHLTALENVM-FGPLRVRGASKEEaekqarELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLM 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 151 FLDEPTSGLDPSNS----KVMKDiiLSEksKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLI 216
Cdd:PRK09493 159 LFDEPTSALDPELRhevlKVMQD--LAE--EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-212 |
4.07e-30 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 113.60 E-value: 4.07e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSfsytdRDF-----LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-SKRHSNKFYE 74
Cdd:COG0411 4 LLEVRGLT-----KRFgglvaVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDiTGLPPHRIAR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 N-IGVDFEFPSLYEKLTAIENLK-----YFGSLYSKKLLS--------------IDELLKSVGLENEANKRVSEYSKGMK 134
Cdd:COG0411 79 LgIARTFQNPRLFPELTVLENVLvaahaRLGRGLLAALLRlprarreerearerAEELLERVGLADRADEPAGNLSYGQQ 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 135 SRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIILS-EKSKGKTIILTTHNMlDA-TELCDRVAFIVNGKISALDTP 212
Cdd:COG0411 159 RRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRlRDERGITILLIEHDM-DLvMGLADRIVVLDFGRVIAEGTP 237
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1-206 |
5.90e-30 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 115.28 E-value: 5.90e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYT--DRDF--LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE----SKRHSNKF 72
Cdd:PRK11153 1 MIELKNISKVFPqgGRTIhaLNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDltalSEKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 73 YENIGVDFEFPSLYEKLTAIEN----LKYFGSlySKKLLS--IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHN 146
Cdd:PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNvalpLELAGT--PKAEIKarVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASN 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489525481 147 PDILFLDEPTSGLDPSNSK----VMKDIilsEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK11153 159 PKVLLCDEATSALDPATTRsileLLKDI---NRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
2-206 |
2.15e-29 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 109.95 E-value: 2.15e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDF------LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYG--GSVIVNGVesKRHSNKFY 73
Cdd:cd03213 4 LSFRNLTVTVKSSPSksgkqlLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGvsGEVLINGR--PLDKRSFR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 74 ENIG-VDFEFpSLYEKLTAIENLkyfgsLYSKKLLSIdellksvgleneankrvseySKGMKSRLNFIKALLHNPDILFL 152
Cdd:cd03213 82 KIIGyVPQDD-ILHPTLTVRETL-----MFAAKLRGL--------------------SGGERKRVSIALELVSNPSLLFL 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 153 DEPTSGLDPSNS-KVMKdiILSEKSK-GKTIILTTHNML-DATELCDRVAFIVNGKI 206
Cdd:cd03213 136 DEPTSGLDSSSAlQVMS--LLRRLADtGRTIICSIHQPSsEIFELFDKLLLLSQGRV 190
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
13-206 |
2.35e-29 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 110.82 E-value: 2.35e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 13 DRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYG---GSVIVNGVESKRHsnKFYENIGVDFEFPSLYEKL 89
Cdd:cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGttsGQILFNGQPRKPD--QFQKCVAYVRQDDILLPGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 90 TAIENLKYFGSLYSKKLLS--------IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDP 161
Cdd:cd03234 97 TVRETLTYTAILRLPRKSSdairkkrvEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDS 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 489525481 162 SNS-KVMKdiILSEKSK-GKTIILTTHN-MLDATELCDRVAFIVNGKI 206
Cdd:cd03234 177 FTAlNLVS--TLSQLARrNRIVILTIHQpRSDLFRLFDRILLLSSGEI 222
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
1-206 |
8.06e-29 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 109.31 E-value: 8.06e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDdlsFSYTDRDFLQNINFEVgKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGV-----ESKRHSNKFYEN 75
Cdd:cd03297 1 MLCVD---IEKRLPDFTLKIDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTvlfdsRKKINLPPQQRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 76 IGVDFEFPSLYEKLTAIENLKY--FGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLD 153
Cdd:cd03297 77 IGLVFQQYALFPHLNVRENLAFglKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLD 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 489525481 154 EPTSGLDpsnsKVMKDIILSE-----KSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:cd03297 157 EPFSALD----RALRLQLLPElkqikKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRL 210
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
9-212 |
2.00e-28 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 114.73 E-value: 2.00e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 9 FSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDFEFPSLYEK 88
Cdd:TIGR01257 938 FEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHH 1017
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 89 LTAIENLKYFGSLYSKKL----LSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNS 164
Cdd:TIGR01257 1018 LTVAEHILFYAQLKGRSWeeaqLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSR 1097
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 489525481 165 KVMKDIILSEKSkGKTIILTTHNMLDATELCDRVAFIVNGKISALDTP 212
Cdd:TIGR01257 1098 RSIWDLLLKYRS-GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
17-208 |
2.15e-28 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 106.36 E-value: 2.15e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVEskrhsnkfyenigVDFEFPslyekltaienlk 96
Cdd:cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE-------------VSFASP------------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 97 yfgslyskkllsidellksvgleNEANKR----VSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIIL 172
Cdd:cd03216 70 -----------------------RDARRAgiamVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIR 126
|
170 180 190
....*....|....*....|....*....|....*.
gi 489525481 173 SEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISA 208
Cdd:cd03216 127 RLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
2-212 |
5.33e-28 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 107.32 E-value: 5.33e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE------SKRHSNKFYEN 75
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDitnlppHKRPVNTVFQN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 76 IgvdfefpSLYEKLTAIENLKyFGsLYSKKL------LSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDI 149
Cdd:cd03300 81 Y-------ALFPHLTVFENIA-FG-LRLKKLpkaeikERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 150 LFLDEPTSGLDpsnSKVMKDIILS----EKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTP 212
Cdd:cd03300 152 LLLDEPLGALD---LKLRKDMQLElkrlQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTP 215
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-206 |
6.48e-28 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 107.82 E-value: 6.48e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMI-----TNYGGSVIVNGveskrhsnkfyENI 76
Cdd:COG1117 12 IEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMNdlipgARVEGEILLDG-----------EDI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 77 ---GVD-----------FE----FP-SLYekltaiEN----LKYFGsLYSKKLLsiDEL----LKSVGLENEA----NKR 125
Cdd:COG1117 81 ydpDVDvvelrrrvgmvFQkpnpFPkSIY------DNvaygLRLHG-IKSKSEL--DEIveesLRKAALWDEVkdrlKKS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 126 VSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKgKTIILTTHNMLDATELCDRVAFIVNGK 205
Cdd:COG1117 152 ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKD-YTIVIVTHNMQQAARVSDYTAFFYLGE 230
|
.
gi 489525481 206 I 206
Cdd:COG1117 231 L 231
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
2-216 |
8.63e-28 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 107.04 E-value: 8.63e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRdFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE------SKRhsnkfyeN 75
Cdd:cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDitnlppEKR-------D 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 76 IGVDFEFPSLYEKLTAIENLKYfG---SLYSKKLLS--IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDIL 150
Cdd:cd03299 73 ISYVPQNYALFPHMTVYKNIAY-GlkkRKVDKKEIErkVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKIL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 151 FLDEPTSGLDP-SNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLI 216
Cdd:cd03299 152 LLDEPFSALDVrTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
17-206 |
9.72e-28 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 106.34 E-value: 9.72e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE----SKRHSNKFYENIGVDFEFPSLYEKLTAI 92
Cdd:cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDvsdlRGRAIPYLRRKIGVVFQDFRLLPDRNVY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 93 ENLKYF-------GSLYSKKllsIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSK 165
Cdd:cd03292 97 ENVAFAlevtgvpPREIRKR---VPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW 173
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 489525481 166 VMKDIILSEKSKGKTIILTTHN--MLDATElcDRVAFIVNGKI 206
Cdd:cd03292 174 EIMNLLKKINKAGTTVVVATHAkeLVDTTR--HRVIALERGKL 214
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-212 |
1.03e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 107.77 E-value: 1.03e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTD--RDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHS-NKFYENIG 77
Cdd:PRK13632 7 MIKVENVSFSYPNseNNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENlKEIRKKIG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 78 VDFEFP------SLYEKLTA--IENLKYFGSLYSKKllsIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDI 149
Cdd:PRK13632 87 IIFQNPdnqfigATVEDDIAfgLENKKVPPKKMKDI---IDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489525481 150 LFLDEPTSGLDPSNSKVMKDIILS-EKSKGKTIILTTHNMLDATeLCDRVAFIVNGKISALDTP 212
Cdd:PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDlRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKP 226
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-224 |
1.12e-27 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 106.65 E-value: 1.12e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGveskrhsnkfyENI---- 76
Cdd:COG1137 3 TLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDG-----------EDIthlp 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 77 -------GVDF---EfPSLYEKLTAIEN----LKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKA 142
Cdd:COG1137 72 mhkrarlGIGYlpqE-ASIFRKLTVEDNilavLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 143 LLHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMSKGAI 222
Cdd:COG1137 151 LATNPKFILLDEPFAGVDPIAVADIQKIIRHLKERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEILNNPLVR 230
|
..
gi 489525481 223 KV 224
Cdd:COG1137 231 KV 232
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
2-206 |
3.02e-27 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 103.93 E-value: 3.02e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDF--LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVEskrhsnkfyenigvd 79
Cdd:cd03247 1 LSINNVSFSYPEQEQqvLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVP--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 fefPSLYEKLTAienlKYFGSLYSKKLLSIDELLKSVGLeneankrvsEYSKGMKSRLNFIKALLHNPDILFLDEPTSGL 159
Cdd:cd03247 66 ---VSDLEKALS----SLISVLNQRPYLFDTTLRNNLGR---------RFSGGERQRLALARILLQDAPIVLLDEPTVGL 129
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 489525481 160 DPSNSKVMKDIILSEkSKGKTIILTTHNmLDATELCDRVAFIVNGKI 206
Cdd:cd03247 130 DPITERQLLSLIFEV-LKDKTLIWITHH-LTGIEHMDKILFLENGKI 174
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-198 |
3.90e-27 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 110.07 E-value: 3.90e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDF-LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKF-YENIGVD 79
Cdd:TIGR02857 322 LEFSGVSVAYPGRRPaLRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSwRDQIAWV 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 FEFPSLYEKlTAIENLKyFGSLYSK--------KLLSIDELLKSV--GLENEANKRVSEYSKGMKSRLNFIKALLHNPDI 149
Cdd:TIGR02857 402 PQHPFLFAG-TIAENIR-LARPDASdaeirealERAGLDEFVAALpqGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPL 479
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 489525481 150 LFLDEPTSGLDPSNSKVMKDIILsEKSKGKTIILTTHNMLDAtELCDRV 198
Cdd:TIGR02857 480 LLLDEPTAHLDAETEAEVLEALR-ALAQGRTVLLVTHRLALA-ALADRI 526
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
2-206 |
4.24e-27 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 105.48 E-value: 4.24e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-------SKRHSNKFYE 74
Cdd:COG4161 3 IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQfdfsqkpSEKAIRLLRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 NIGVDFEFPSLYEKLTAIENL-----KYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDI 149
Cdd:COG4161 83 KVGMVFQQYNLWPHLTVMENLieapcKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQV 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 150 LFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:COG4161 163 LLFDEPTAALDPEITAQVVEIIRELSQTGITQVIVTHEVEFARKVASQVVYMEKGRI 219
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1-212 |
4.71e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 105.93 E-value: 4.71e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTD-RDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE---SKRHSNKFYENI 76
Cdd:PRK13639 1 ILETRDLKYSYPDgTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPikyDKKSLLEVRKTV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 77 GVDFEFPSlyEKLTA--IENLKYFGSLYSKklLSIDEL-------LKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNP 147
Cdd:PRK13639 81 GIVFQNPD--DQLFAptVEEDVAFGPLNLG--LSKEEVekrvkeaLKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 148 DILFLDEPTSGLDPSN-SKVMKdiILSEKSK-GKTIILTTHNMLDATELCDRVAFIVNGKISALDTP 212
Cdd:PRK13639 157 EIIVLDEPTSGLDPMGaSQIMK--LLYDLNKeGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTP 221
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
2-212 |
1.57e-26 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 103.96 E-value: 1.57e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-SKRHSNKfyENIGVDF 80
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDaTDVPVQE--RNVGFVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EFPSLYEKLTAIENLKyFGsLYSKKLLS----------IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDIL 150
Cdd:cd03296 81 QHYALFRHMTVFDNVA-FG-LRVKPRSErppeaeirakVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489525481 151 FLDEPTSGLDpsnSKVMKDI--ILSE--KSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTP 212
Cdd:cd03296 159 LLDEPFGALD---AKVRKELrrWLRRlhDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTP 221
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
2-215 |
3.89e-26 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 102.13 E-value: 3.89e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNkfYE--NIGVD 79
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPP--HEraRAGIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 F--EFPSLYEKLTAIENLKYfgSLYSKKLLSIDELLKSV-----GLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFL 152
Cdd:cd03224 79 YvpEGRRIFPELTVEENLLL--GAYARRRAKRKARLERVyelfpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489525481 153 DEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1-216 |
4.08e-26 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 106.81 E-value: 4.08e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSY--TDRDFLQ---NINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVN-----------GVE 64
Cdd:TIGR03269 279 IIKVRNVSKRYisVDRGVVKavdNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvgdewvdmtkpGPD 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 65 SKRHSNKFyenIGVDFEFPSLYEKLTAIENLKYFGSLYSKKLLSIDE---LLKSVGLENEA-----NKRVSEYSKGMKSR 136
Cdd:TIGR03269 359 GRGRAKRY---IGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKaviTLKMVGFDEEKaeeilDKYPDELSEGERHR 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 137 LNFIKALLHNPDILFLDEPTSGLDP-SNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPiTKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515
|
.
gi 489525481 216 I 216
Cdd:TIGR03269 516 V 516
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
17-204 |
4.91e-26 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 106.79 E-value: 4.91e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKF-YEN-IGVDFEFPSLYEKLTAIEN 94
Cdd:PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLaAQLgIGIIYQELSVIDELTVLEN 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 95 LkYFGSLYSKKLLSID------------ELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPS 162
Cdd:PRK09700 101 L-YIGRHLTKKVCGVNiidwremrvraaMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNK 179
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 489525481 163 NSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNG 204
Cdd:PRK09700 180 EVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDG 221
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
2-220 |
4.91e-26 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 106.79 E-value: 4.91e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSY-TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHS-NKFYENIGVD 79
Cdd:COG1132 340 IEFENVSFSYpGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTlESLRRQIGVV 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 FEFPSLYEkLTAIENLKYFGSLYSK-------KLLSIDELLKSV--GLENEANKRVSEYSKGMKSRLNFIKALLHNPDIL 150
Cdd:COG1132 420 PQDTFLFS-GTIRENIRYGRPDATDeeveeaaKAAQAHEFIEALpdGYDTVVGERGVNLSGGQRQRIAIARALLKDPPIL 498
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489525481 151 FLDEPTSGLDPSN-SKVMKdiILSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISALDTPHNLIMSKG 220
Cdd:COG1132 499 ILDEATSALDTETeALIQE--ALERLMKGRTTIVIAHR-LSTIRNADRILVLDDGRIVEQGTHEELLARGG 566
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
2-206 |
5.34e-26 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 101.56 E-value: 5.34e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGveskRHSNKFY---ENIGV 78
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG----RDVTDLPpkdRDIAM 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFPSLYEKLTAIENLKYfgSLYSKKL--LSIDELLKSV----GLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFL 152
Cdd:cd03301 77 VFQNYALYPHMTVYDNIAF--GLKLRKVpkDEIDERVREVaellQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLM 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 489525481 153 DEPTSGLDPSNSKVMK-DIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:cd03301 155 DEPLSNLDAKLRVQMRaELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-199 |
6.78e-26 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 103.98 E-value: 6.78e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSY-TDRDFLQ---NINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYG---GSVIVNGVE----SKRHS 69
Cdd:COG0444 1 LLEVRNLKVYFpTRRGVVKavdGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPPGitsGEILFDGEDllklSEKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 70 NKFYEN-IGVDFEFPslyekLTA-----------IENLKYFGSLYSKKLLS-IDELLKSVGLeNEANKRVSEY----SKG 132
Cdd:COG0444 81 RKIRGReIQMIFQDP-----MTSlnpvmtvgdqiAEPLRIHGGLSKAEARErAIELLERVGL-PDPERRLDRYphelSGG 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489525481 133 MKSRLNFIKALLHNPDILFLDEPTSGLDPSnskVMKDII--LSE--KSKGKTIILTTHNMLDATELCDRVA 199
Cdd:COG0444 155 MRQRVMIARALALEPKLLIADEPTTALDVT---IQAQILnlLKDlqRELGLAILFITHDLGVVAEIADRVA 222
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
17-226 |
1.03e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 102.60 E-value: 1.03e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-----SKRHSNKFYENIGVDFEFP--SLYEKl 89
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHitpetGNKNLKKLRKKVSLVFQFPeaQLFEN- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 90 TAIENLKY----FGSLYSKKLLSIDELLKSVGL-ENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNS 164
Cdd:PRK13641 102 TVLKDVEFgpknFGFSEDEAKEKALKWLKKVGLsEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGR 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 165 KVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMSKGAIKVRY 226
Cdd:PRK13641 182 KEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKEWLKKHY 243
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
24-215 |
1.16e-25 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 106.64 E-value: 1.16e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 24 VGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDFEFPSLYEKLTAIENLKYFGSLYS 103
Cdd:TIGR01257 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG 2041
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 104 KKLLSIDEL----LKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGK 179
Cdd:TIGR01257 2042 VPAEEIEKVanwsIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGR 2121
|
170 180 190
....*....|....*....|....*....|....*.
gi 489525481 180 TIILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:TIGR01257 2122 AVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
2-208 |
1.62e-25 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 100.26 E-value: 1.62e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEvgKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE------SKRH-SNKFYE 74
Cdd:cd03298 1 VRLDKIRFSYGEQPMHFDLTFA--QGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDvtaappADRPvSMLFQE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 NigvdfefpSLYEKLTAIENLKYFGS----LYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDIL 150
Cdd:cd03298 79 N--------NLFAHLTVEQNVGLGLSpglkLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVL 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 151 FLDEPTSGLDPSNSKVMKDIIL-SEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISA 208
Cdd:cd03298 151 LLDEPFAALDPALRAEMLDLVLdLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
2-208 |
1.74e-25 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 100.36 E-value: 1.74e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSY--TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKR-HSNKFYENIG- 77
Cdd:cd03245 3 IEFRNVSFSYpnQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQlDPADLRRNIGy 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 78 ----VDFEFPSLYEKLTaienlkyFGSLYSK--------KLLSIDELLKS--VGLENEANKRVSEYSKGMKSRLNFIKAL 143
Cdd:cd03245 83 vpqdVTLFYGTLRDNIT-------LGAPLADderilraaELAGVTDFVNKhpNGLDLQIGERGRGLSGGQRQAVALARAL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 144 LHNPDILFLDEPTSGLDPSNSKVMKDiILSEKSKGKTIILTTH--NMLDateLCDRVAFIVNGKISA 208
Cdd:cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKE-RLRQLLGDKTLIIITHrpSLLD---LVDRIIVMDSGRIVA 218
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-215 |
2.06e-25 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 103.23 E-value: 2.06e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVI-----VNGVE-SKRhsnkfye 74
Cdd:COG3839 3 SLELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILiggrdVTDLPpKDR------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 NIGVDFEFPSLYEKLTAIENLKYfgSLYSKKLLS------IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPD 148
Cdd:COG3839 76 NIAMVFQSYALYPHMTVYENIAF--PLKLRKVPKaeidrrVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPK 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489525481 149 ILFLDEPTSGLDPsNSKV-----MKDIIlseKSKGKTIILTTHnmlDATE---LCDRVAFIVNGKISALDTPHNL 215
Cdd:COG3839 154 VFLLDEPLSNLDA-KLRVemraeIKRLH---RRLGTTTIYVTH---DQVEamtLADRIAVMNDGRIQQVGTPEEL 221
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
17-215 |
5.10e-25 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 103.97 E-value: 5.10e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITN---YGGSVIVNGV-----ESKRHSNKFYEnigVDFEFPSLyek 88
Cdd:TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKgvkGSGSVLLNGMpidakEMRAISAYVQQ---DDLFIPTL--- 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 89 lTAIENLKYFGSL-------YSKKLLSIDELLKSVGLENEAN------KRVSEYSKGMKSRLNFIKALLHNPDILFLDEP 155
Cdd:TIGR00955 115 -TVREHLMFQAHLrmprrvtKKEKRERVDEVLQALGLRKCANtrigvpGRVKGLSGGERKRLAFASELLTDPPLLFCDEP 193
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489525481 156 TSGLDP----SNSKVMKDIilseKSKGKTIILTTHN-MLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:TIGR00955 194 TSGLDSfmaySVVQVLKGL----AQKGKTIICTIHQpSSELFELFDKIILMAEGRVAYLGSPDQA 254
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
2-220 |
8.21e-25 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 98.84 E-value: 8.21e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSY-TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFY-ENIGVD 79
Cdd:cd03254 3 IEFENVNFSYdEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLrSMIGVV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 FEFPSLYEKlTAIENLKYfGSLYSK--------KLLSIDELLKSV--GLENEANKRVSEYSKGMKSRLNFIKALLHNPDI 149
Cdd:cd03254 83 LQDTFLFSG-TIMENIRL-GRPNATdeevieaaKEAGAHDFIMKLpnGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489525481 150 LFLDEPTSGLDPSNSKVMKDIILsEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISALDTPHNLIMSKG 220
Cdd:cd03254 161 LILDEATSNIDTETEKLIQEALE-KLMKGRTSIIIAHR-LSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1-193 |
8.23e-25 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 98.41 E-value: 8.23e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESkrhsnkfyenigvdf 80
Cdd:PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI--------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EFPSLYEK-------------LTAIENLKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNP 147
Cdd:PRK13539 67 DDPDVAEAchylghrnamkpaLTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNR 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 489525481 148 DILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATE 193
Cdd:PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-208 |
1.06e-24 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 99.00 E-value: 1.06e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMIT-NYGGSVIV----NGVES----KRHsnk 71
Cdd:COG1119 3 LLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPpTYGNDVRLfgerRGGEDvwelRKR--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 72 fyenIG-VDfefPSLYEKLTAIENLK------YFGSL-----YSKKLLSI-DELLKSVGLENEANKRVSEYSKGMKSRLN 138
Cdd:COG1119 80 ----IGlVS---PALQLRFPRDETVLdvvlsgFFDSIglyrePTDEQRERaRELLELLGLAHLADRPFGTLSQGEQRRVL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 139 FIKALLHNPDILFLDEPTSGLDPSNSKVMKDII--LSeKSKGKTIILTTHNMLDATELCDRVAFIVNGKISA 208
Cdd:COG1119 153 IARALVKDPELLILDEPTAGLDLGARELLLALLdkLA-AEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVA 223
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
2-186 |
1.21e-24 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 97.81 E-value: 1.21e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDFE 81
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 82 FPSLYEKLTAIENLKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDP 161
Cdd:TIGR01189 81 LPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDK 160
|
170 180
....*....|....*....|....*
gi 489525481 162 SNSKVMKDIILSEKSKGKTIILTTH 186
Cdd:TIGR01189 161 AGVALLAGLLRAHLARGGIVLLTTH 185
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-217 |
1.33e-24 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 99.08 E-value: 1.33e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGM--------ITnygGSVIVNG--VESKRHSN 70
Cdd:PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndlnpevtIT---GSIVYNGhnIYSPRTDT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 71 -KFYENIGVDFEFPSLYeKLTAIENLKY---FGSLYSKKLL--SIDELLKSVGLENEANKRVSE----YSKGMKSRLNFI 140
Cdd:PRK14239 82 vDLRKEIGMVFQQPNPF-PMSIYENVVYglrLKGIKDKQVLdeAVEKSLKGASIWDEVKDRLHDsalgLSGGQQQRVCIA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 141 KALLHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKgKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIM 217
Cdd:PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDD-YTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
17-270 |
1.99e-24 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 101.26 E-value: 1.99e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFY-----ENIGVDFEFPSLYEKLTA 91
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELrevrrKKIAMVFQSFALMPHMTV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 92 IEN----LKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVM 167
Cdd:PRK10070 124 LDNtafgMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEM 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 168 KDIILSEKSK-GKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMSKGAIKVRyTYFdNGEKTSECFLNNTAND 246
Cdd:PRK10070 204 QDELVKLQAKhQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR-TFF-RGVDISQVFSAKDIAR 281
|
250 260
....*....|....*....|....
gi 489525481 247 KNLNMLIEKNKLLSIHSSEPTLND 270
Cdd:PRK10070 282 RTPNGLIRKTPGFGPRSALKLLQD 305
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
2-212 |
3.01e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 98.97 E-value: 3.01e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYT-----DRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYE-- 74
Cdd:PRK13637 3 IKIENLTHIYMegtpfEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDir 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 -NIGVDFEFP--SLYEKltAIENLKYFGslySKKL-LSIDEL-------LKSVGLENEANKRVS--EYSKGMKSRLNFIK 141
Cdd:PRK13637 83 kKVGLVFQYPeyQLFEE--TIEKDIAFG---PINLgLSEEEIenrvkraMNIVGLDYEDYKDKSpfELSGGQKRRVAIAG 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489525481 142 ALLHNPDILFLDEPTSGLDPSNskvmKDIILSE-----KSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTP 212
Cdd:PRK13637 158 VVAMEPKILILDEPTAGLDPKG----RDEILNKikelhKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTP 229
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1-215 |
3.99e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 98.24 E-value: 3.99e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRD------FLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSN--KF 72
Cdd:PRK13633 4 MIKCKNVSYKYESNEesteklALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENlwDI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 73 YENIGVDFEFP------SLYEKLTAI--ENLkyfGSLYSKKLLSIDELLKSVGLeneankrvSEY--------SKGMKSR 136
Cdd:PRK13633 84 RNKAGMVFQNPdnqivaTIVEEDVAFgpENL---GIPPEEIRERVDESLKKVGM--------YEYrrhaphllSGGQKQR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 137 LNFIKALLHNPDILFLDEPTSGLDPSNSK-VMKDIILSEKSKGKTIILTTHNMLDATElCDRVAFIVNGKISALDTPHNL 215
Cdd:PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRReVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEI 231
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
15-187 |
1.50e-23 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 94.41 E-value: 1.50e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 15 DFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKrHSNK--------------------FYE 74
Cdd:TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLD-YSRKgllerrqrvglvfqdpddqlFAA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 NIGVDFEFPSLyekltaieNLKYFGSLYSKKllsIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDE 154
Cdd:TIGR01166 85 DVDQDVAFGPL--------NLGLSEAEVERR---VREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153
|
170 180 190
....*....|....*....|....*....|...
gi 489525481 155 PTSGLDPSNSKVMKDIILSEKSKGKTIILTTHN 187
Cdd:TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
2-221 |
1.55e-23 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 95.76 E-value: 1.55e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSY-TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHS-NKFYENIGVD 79
Cdd:cd03253 1 IEFENVTFAYdPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTlDSLRRAIGVV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 FEFPSLYEKlTAIENLKYfGSL--------YSKKLLSIDELLKSvgLENEANKRVSE----YSKGMKSRLNFIKALLHNP 147
Cdd:cd03253 81 PQDTVLFND-TIGYNIRY-GRPdatdeeviEAAKAAQIHDKIMR--FPDGYDTIVGErglkLSGGEKQRVAIARAILKNP 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489525481 148 DILFLDEPTSGLD-PSNSKVMKDiiLSEKSKGKTIILTTHNMLDATElCDRVAFIVNGKISALDTPHNLIMSKGA 221
Cdd:cd03253 157 PILLLDEATSALDtHTEREIQAA--LRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLAKGGL 228
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1-216 |
2.18e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 96.21 E-value: 2.18e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTD-RDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSN--KFYENIG 77
Cdd:PRK13644 1 MIRLENVSYSYPDgTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKlqGIRKLVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 78 VDFEFP-SLYEKLTAIENLKY------FGSLYSKKLlsIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDIL 150
Cdd:PRK13644 81 IVFQNPeTQFVGRTVEEDLAFgpenlcLPPIEIRKR--VDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489525481 151 FLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISALDTPHNLI 216
Cdd:PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHN-LEELHDADRIIVMDRGKIVLEGEPENVL 223
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
2-224 |
2.21e-23 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 95.35 E-value: 2.21e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESK---RHSnKFYENIGV 78
Cdd:PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISllpLHA-RARRGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFPSLYEKLTAIENLkyFGSLYSKKLLS-------IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILF 151
Cdd:PRK10895 83 LPQEASIFRRLSVYDNL--MAVLQIRDDLSaeqredrANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489525481 152 LDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMSKGAIKV 224
Cdd:PRK10895 161 LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRV 233
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-206 |
2.66e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 95.36 E-value: 2.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNY-----GGSVIVNGVES-KRHSNKFYEN 75
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYpearvSGEVYLDGQDIfKMDVIELRRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 76 IGVDFEFPSLYEKLTAIEN----LKYFGSLYSKKLLS--IDELLKSVGLENEANKRV----SEYSKGMKSRLNFIKALLH 145
Cdd:PRK14247 84 VQMVFQIPNPIPNLSIFENvalgLKLNRLVKSKKELQerVRWALEKAQLWDEVKDRLdapaGKLSGGQQQRLCIARALAF 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489525481 146 NPDILFLDEPTSGLDPSNSKVMKDIILsEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK14247 164 QPEVLLADEPTANLDPENTAKIESLFL-ELKKDMTIVLVTHFPQQAARISDYVAFLYKGQI 223
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
2-221 |
2.66e-23 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 95.30 E-value: 2.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDR---DFLQNINFEVGKGEILGFLGPSGAGKSTLqkilIGMITNY----GGSVIVNGVESKRHSNKFY- 73
Cdd:cd03249 1 IEFKNVSFRYPSRpdvPILKGLSLTIPPGKTVALVGSSGCGKSTV----VSLLERFydptSGEILLDGVDIRDLNLRWLr 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 74 ENIGVDFEFPSLYEKlTAIENLKYfgSLYSKKLLSIDELLKSV-----------GLENEANKRVSEYSKGMKSRLNFIKA 142
Cdd:cd03249 77 SQIGLVSQEPVLFDG-TIAENIRY--GKPDATDEEVEEAAKKAnihdfimslpdGYDTLVGERGSQLSGGQKQRIAIARA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 143 LLHNPDILFLDEPTSGLDPSNSKVMKDiILSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISALDTPHNLIMSKGA 221
Cdd:cd03249 154 LLRNPKILLLDEATSALDAESEKLVQE-ALDRAMKGRTTIVIAHR-LSTIRNADLIAVLQNGQVVEQGTHDELMAQKGV 230
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
13-206 |
4.49e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 95.11 E-value: 4.49e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 13 DRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-------SKRHSNKFYENIGVDFEFPSL 85
Cdd:PRK14246 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVlyfgkdiFQIDAIKLRKEVGMVFQQPNP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 86 YEKLTAIENLKY----FGSLYSKKLLSI-DELLKSVGLENEANKRV----SEYSKGMKSRLNFIKALLHNPDILFLDEPT 156
Cdd:PRK14246 102 FPHLSIYDNIAYplksHGIKEKREIKKIvEECLRKVGLWKEVYDRLnspaSQLSGGQQQRLTIARALALKPKVLLMDEPT 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 489525481 157 SGLDPSNSKVMKDIIlSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK14246 182 SMIDIVNSQAIEKLI-TELKNEIAIVIVSHNPQQVARVADYVAFLYNGEL 230
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
2-206 |
5.24e-23 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 94.31 E-value: 5.24e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE---SKRHSNK----FYE 74
Cdd:PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHfdfSKTPSDKaireLRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 NIGVDFEFPSLYEKLTAIENL-----KYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDI 149
Cdd:PRK11124 83 NVGMVFQQYNLWPHLTVQQNLieapcRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQV 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 150 LFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK11124 163 LLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHI 219
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
2-205 |
5.55e-23 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 93.30 E-value: 5.55e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDF-----LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESkrhsnkfY--- 73
Cdd:cd03250 1 ISVEDASFTWDSGEQetsftLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA-------Yvsq 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 74 ----------ENI--GVDFEfPSLYEK-LTA------IENLKyfgslyskkllsiDELLKSVGlENEANkrvseYSKGMK 134
Cdd:cd03250 74 epwiqngtirENIlfGKPFD-EERYEKvIKAcalepdLEILP-------------DGDLTEIG-EKGIN-----LSGGQK 133
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 135 SRLNFIKALLHNPDILFLDEPTSGLDPSNSK-VMKDIILSEKSKGKTIILTTHNmLDATELCDRVAFIVNGK 205
Cdd:cd03250 134 QRISLARAVYSDADIYLLDDPLSAVDAHVGRhIFENCILGLLLNNKTRILVTHQ-LQLLPHADQIVVLDNGR 204
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-206 |
5.74e-23 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 97.83 E-value: 5.74e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVN-GVEskrhsnkfyenIG-V 78
Cdd:COG0488 315 VLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLGeTVK-----------IGyF 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFPSLYEKLTAIENLKYFGSlySKKLLSIDELLKSVGLENE-ANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTS 157
Cdd:COG0488 384 DQHQEELDPDKTVLDELRDGAP--GGTEQEVRGYLGRFLFSGDdAFKPVGVLSGGEKARLALAKLLLSPPNVLLLDEPTN 461
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 489525481 158 GLDPsnskVMKDIILS--EKSKGkTIILTTHNM--LDAteLCDRVAFIVNGKI 206
Cdd:COG0488 462 HLDI----ETLEALEEalDDFPG-TVLLVSHDRyfLDR--VATRILEFEDGGV 507
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-216 |
6.53e-23 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 97.95 E-value: 6.53e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGM--ITNYGGSVIVN----------------GV 63
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIIYHvalcekcgyverpskvGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 64 ESKRHSNKFyENIGVDFEFPS--------------------LYEKLTAIEN-------LKYFGSLYSKKLLsidELLKSV 116
Cdd:TIGR03269 81 PCPVCGGTL-EPEEVDFWNLSdklrrrirkriaimlqrtfaLYGDDTVLDNvlealeeIGYEGKEAVGRAV---DLIEMV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 117 GLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIILSE-KSKGKTIILTTHNMLDATELC 195
Cdd:TIGR03269 157 QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAvKASGISMVLTSHWPEVIEDLS 236
|
250 260
....*....|....*....|.
gi 489525481 196 DRVAFIVNGKISALDTPHNLI 216
Cdd:TIGR03269 237 DKAIWLENGEIKEEGTPDEVV 257
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-206 |
9.28e-23 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 97.44 E-value: 9.28e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 4 VDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVN---------------------- 61
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPkglrigylpqeppldddltvld 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 62 ----GVESKRHSNKFYENIGVDFEFPS-LYEKLTAIEN-LKYFG--SLYSKkllsIDELLKSVGL-ENEANKRVSEYSKG 132
Cdd:COG0488 81 tvldGDAELRALEAELEELEAKLAEPDeDLERLAELQEeFEALGgwEAEAR----AEEILSGLGFpEEDLDRPVSELSGG 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 133 MKSRLNFIKALLHNPDILFLDEPTSGLDpsnskvMKDII-LSE--KSKGKTIILTTHN--MLDATelCDRVAFIVNGKI 206
Cdd:COG0488 157 WRRRVALARALLSEPDLLLLDEPTNHLD------LESIEwLEEflKNYPGTVLVVSHDryFLDRV--ATRILELDRGKL 227
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-200 |
9.41e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 94.33 E-value: 9.41e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMiTNYGGSVIVNG---------VESKRHSNKF 72
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM-NELESEVRVEGrveffnqniYERRVNLNRL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 73 YENIGVDFEFPSLYeKLTAIENLKYFGSLYS-KKLLSIDELLKSV--------GLENEANKRVSEYSKGMKSRLNFIKAL 143
Cdd:PRK14258 87 RRQVSMVHPKPNLF-PMSVYDNVAYGVKIVGwRPKLEIDDIVESAlkdadlwdEIKHKIHKSALDLSGGQQQRLCIARAL 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 489525481 144 LHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGK-TIILTTHNMLDATELCDRVAF 200
Cdd:PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSElTMVIVSHNLHQVSRLSDFTAF 223
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1-194 |
9.50e-23 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 94.00 E-value: 9.50e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFyeniGVDF 80
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER----GVVF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EFPSLYEKLTAIEN----LKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPT 156
Cdd:PRK11248 77 QNEGLLPWRNVQDNvafgLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 489525481 157 SGLDPSNSKVMKDIILSE-KSKGKTIILTTHNMLD----ATEL 194
Cdd:PRK11248 157 GALDAFTREQMQTLLLKLwQETGKQVLLITHDIEEavfmATEL 199
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-206 |
1.06e-22 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 93.75 E-value: 1.06e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKI---LI---------GMITNYGGSVI---VNGVESK 66
Cdd:PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTfnrLLelneearveGEVRLFGRNIYspdVDPIEVR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 67 RHsnkfyenIGVDFEFPSLYEKLTAIEN----LKYFGSLYSKKllSIDEL----LKSVGLENEANKRVSEY----SKGMK 134
Cdd:PRK14267 85 RE-------VGMVFQYPNPFPHLTIYDNvaigVKLNGLVKSKK--ELDERvewaLKKAALWDEVKDRLNDYpsnlSGGQR 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 135 SRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIILsEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLF-ELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-208 |
1.26e-22 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 93.27 E-value: 1.26e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDR----DFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE---------SKR 67
Cdd:COG4181 8 IIELRGLTKTVGTGagelTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDlfaldedarARL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 68 HSnkfyENIGVDF-EF---PSlyekLTAIEN----LKYFGSLYSKKLLSidELLKSVGLENEANKRVSEYSKGMKSRLNF 139
Cdd:COG4181 88 RA----RHVGFVFqSFqllPT----LTALENvmlpLELAGRRDARARAR--ALLERVGLGHRLDHYPAQLSGGEQQRVAL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 140 IKALLHNPDILFLDEPTSGLDPSNSKVMKDIILS-EKSKGKTIILTTHNMLDAtELCDRVAFIVNGKISA 208
Cdd:COG4181 158 ARAFATEPAILFADEPTGNLDAATGEQIIDLLFElNRERGTTLVLVTHDPALA-ARCDRVLRLRAGRLVE 226
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
2-208 |
1.35e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 94.03 E-value: 1.35e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTD-RDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYEN-IGVD 79
Cdd:PRK13647 5 IEVEDLHFRYKDgTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSkVGLV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 FEFPSLYEKLTAIENLKYFG----SLYSKKLLS-IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDE 154
Cdd:PRK13647 85 FQDPDDQVFSSTVWDDVAFGpvnmGLDKDEVERrVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDE 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 489525481 155 PTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISA 208
Cdd:PRK13647 165 PMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA 218
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-206 |
2.08e-22 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 93.54 E-value: 2.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITN----------YGGSVIVNGvESKRHSN 70
Cdd:PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGdksagshielLGRTVQREG-RLARDIR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 71 KFYENIGVDFEFPSLYEKLTAIEN---------------LKYFGSLYSKKLLsidELLKSVGLENEANKRVSEYSKGMKS 135
Cdd:PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENvligalgstpfwrtcFSWFTREQKQRAL---QALTRVGMVHFAHQRVSTLSGGQQQ 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 136 RLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIILS-EKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDiNQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
15-188 |
3.46e-22 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 92.19 E-value: 3.46e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 15 DFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNG-----VESKRHSNKFYENIGVDFEFPSLYEKL 89
Cdd:PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGqpmskLSSAAKAELRNQKLGFIYQFHHLLPDF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 90 TAIENLKYFGSLYSKKLLSID----ELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSK 165
Cdd:PRK11629 103 TALENVAMPLLIGKKKPAEINsralEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182
|
170 180
....*....|....*....|....*
gi 489525481 166 VMKDiILSE--KSKGKTIILTTHNM 188
Cdd:PRK11629 183 SIFQ-LLGElnRLQGTAFLVVTHDL 206
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
2-215 |
3.78e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 93.16 E-value: 3.78e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYT-----DRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSV------IVNGVESKrHSN 70
Cdd:PRK13634 3 ITFQKVEHRYQyktpfERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVtigervITAGKKNK-KLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 71 KFYENIGVDFEFP--SLYEKlTAIENLKY----FGSLYSKKLLSIDELLKSVGLENEANKRVS-EYSKGMKSRLNFIKAL 143
Cdd:PRK13634 82 PLRKKVGIVFQFPehQLFEE-TVEKDICFgpmnFGVSEEDAKQKAREMIELVGLPEELLARSPfELSGGQMRRVAIAGVL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489525481 144 LHNPDILFLDEPTSGLDPSNSKVMKDIILS-EKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKlHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
2-212 |
3.94e-22 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 94.00 E-value: 3.94e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-SKRHSNKfyENIGVDF 80
Cdd:PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDvSRLHARD--RKVGFVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EFPSLYEKLTAIENLKyFG------------SLYSKKLLsidELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPD 148
Cdd:PRK10851 81 QHYALFRHMTVFDNIA-FGltvlprrerpnaAAIKAKVT---QLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 149 ILFLDEPTSGLDpsnSKVMKDI-----ILSEKSKgKTIILTTHNMLDATELCDRVAFIVNGKISALDTP 212
Cdd:PRK10851 157 ILLLDEPFGALD---AQVRKELrrwlrQLHEELK-FTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTP 221
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-212 |
3.99e-22 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 94.24 E-value: 3.99e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE------SKRHSNKFYEN 75
Cdd:PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDithvpaENRHVNTVFQS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 76 IgvdfefpSLYEKLTAIENLKyFGsLYSKKLLSID------ELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDI 149
Cdd:PRK09452 95 Y-------ALFPHMTVFENVA-FG-LRMQKTPAAEitprvmEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489525481 150 LFLDEPTSGLDPSNSKVMK-DIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTP 212
Cdd:PRK09452 166 LLLDESLSALDYKLRKQMQnELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTP 229
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-206 |
4.10e-22 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 92.12 E-value: 4.10e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE---------SKRHSNK 71
Cdd:PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITidtarslsqQKGLIRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 72 FYENIGVDFEFPSLYEKLTAIENLkYFGSLYSKKLLSID------ELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLH 145
Cdd:PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENI-IEGPVIVKGEPKEEatararELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489525481 146 NPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK11264 162 RPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
17-205 |
8.78e-22 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 94.61 E-value: 8.78e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMIT--NYGGSVIVNGVESKRHSNKFYENIGVDF---EFpSLYEKLTA 91
Cdd:PRK13549 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPhgTYEGEIIFEGEELQASNIRDTERAGIAIihqEL-ALVKELSV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 92 IEN------LKYFGSL-YSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNS 164
Cdd:PRK13549 100 LENiflgneITPGGIMdYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESET 179
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 489525481 165 KVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGK 205
Cdd:PRK13549 180 AVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-223 |
8.92e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 92.22 E-value: 8.92e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTD-RDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE---SKRHSNKFYENI 76
Cdd:PRK13636 5 ILKVEELNYNYSDgTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPidySRKGLMKLRESV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 77 GVDFEFP-------SLYEKLT-AIENLKYFGSLYSKKllsIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPD 148
Cdd:PRK13636 85 GMVFQDPdnqlfsaSVYQDVSfGAVNLKLPEDEVRKR---VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489525481 149 ILFLDEPTSGLDPSN-SKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMSKGAIK 223
Cdd:PRK13636 162 VLVLDEPTAGLDPMGvSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLR 237
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
6-206 |
9.18e-22 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 90.61 E-value: 9.18e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 6 DLSFSY---TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFY-ENIGVDFE 81
Cdd:cd03248 16 NVTFAYptrPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLhSKVSLVGQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 82 FPSLYEKlTAIENLKYfgSLYSKKLLSIDELLKSV-----------GLENEANKRVSEYSKGMKSRLNFIKALLHNPDIL 150
Cdd:cd03248 96 EPVLFAR-SLQDNIAY--GLQSCSFECVKEAAQKAhahsfiselasGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 489525481 151 FLDEPTSGLDpSNSKVMKDIILSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKI 206
Cdd:cd03248 173 ILDEATSALD-AESEQQVQQALYDWPERRTVLVIAHR-LSTVERADQILVLDGGRI 226
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
1-215 |
9.91e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 92.10 E-value: 9.91e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRD-----FLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMI-----TNYGGSVIVNGVESKRHSN 70
Cdd:PRK13643 1 MIKFEKVNYTYQPNSpfasrALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLqptegKVTVGDIVVSSTSKQKEIK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 71 KFYENIGVDFEFP--SLYEKlTAIENLKY----FGSLYSKKLLSIDELLKSVGLENEA-NKRVSEYSKGMKSRLNFIKAL 143
Cdd:PRK13643 81 PVRKKVGVVFQFPesQLFEE-TVLKDVAFgpqnFGIPKEKAEKIAAEKLEMVGLADEFwEKSPFELSGGQMRRVAIAGIL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 144 LHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
2-228 |
1.00e-21 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 91.01 E-value: 1.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYT--DRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-SKRHSNKFYENIGV 78
Cdd:cd03252 1 ITFEHVRFRYKpdGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDlALADPAWLRRQVGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFPSLYEKlTAIENLKYFGS-------LYSKKLLSIDELLKSV--GLENEANKRVSEYSKGMKSRLNFIKALLHNPDI 149
Cdd:cd03252 81 VLQENVLFNR-SIRDNIALADPgmsmervIEAAKLAGAHDFISELpeGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 150 LFLDEPTSGLDPSNSKV----MKDIilsekSKGKTIILTTHNmLDATELCDRVAFIVNGKISALDTPHNLIMSKGaikvR 225
Cdd:cd03252 160 LIFDEATSALDYESEHAimrnMHDI-----CAGRTVIIIAHR-LSTVKNADRIIVMEKGRIVEQGSHDELLAENG----L 229
|
...
gi 489525481 226 YTY 228
Cdd:cd03252 230 YAY 232
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-215 |
1.11e-21 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 90.81 E-value: 1.11e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-SKRHSNK------FY 73
Cdd:COG0410 3 MLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDiTGLPPHRiarlgiGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 74 --ENIGVdfeFPSlyekLTAIENLKyFGSLYSKKLLSIDELLKSVG-----LENEANKRVSEYSKG---MksrLNFIKAL 143
Cdd:COG0410 83 vpEGRRI---FPS----LTVEENLL-LGAYARRDRAEVRADLERVYelfprLKERRRQRAGTLSGGeqqM---LAIGRAL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 144 LHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:COG0410 152 MSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAEL 223
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
14-186 |
2.05e-21 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 89.63 E-value: 2.05e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 14 RDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIvngveskrhsnkfyenigVDFEFPSLYEKLTAIE 93
Cdd:COG2401 43 RYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGC------------------VDVPDNQFGREASLID 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 94 NLKYFGSLYSKKllsidELLKSVGLeNEA---NKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDI 170
Cdd:COG2401 105 AIGRKGDFKDAV-----ELLNAVGL-SDAvlwLRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTAKRVARN 178
|
170
....*....|....*..
gi 489525481 171 ILSE-KSKGKTIILTTH 186
Cdd:COG2401 179 LQKLaRRAGITLVVATH 195
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
2-206 |
3.32e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 90.57 E-value: 3.32e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYT-----DRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHS-NKFYEN 75
Cdd:PRK13649 3 INLQNVSYTYQagtpfEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSkNKDIKQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 76 I----GVDFEFP--SLYEKlTAIENLKY----FGSLYSKKLLSIDELLKSVGL-ENEANKRVSEYSKGMKSRLNFIKALL 144
Cdd:PRK13649 83 IrkkvGLVFQFPesQLFEE-TVLKDVAFgpqnFGVSQEEAEALAREKLALVGIsESLFEKNPFELSGGQMRRVAIAGILA 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 145 HNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKL 223
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1-212 |
4.75e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 89.86 E-value: 4.75e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYT-DRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-SKRHSNKFYENIGV 78
Cdd:PRK13652 3 LIETRDLCYSYSgSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPiTKENIREVRKFVGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFPSLYEKLTAIENLKYFG----SLYSKKLL-SIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLD 153
Cdd:PRK13652 83 VFQNPDDQIFSPTVEQDIAFGpinlGLDEETVAhRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLD 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489525481 154 EPTSGLDPSNSKVMKDII--LSEKSkGKTIILTTHNMLDATELCDRVAFIVNGKISALDTP 212
Cdd:PRK13652 163 EPTAGLDPQGVKELIDFLndLPETY-GMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTV 222
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
17-204 |
4.77e-21 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 89.06 E-value: 4.77e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSnkfyENIGVDFEFPSLYEKLTAIENLk 96
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDRMVVFQNYSLLPWLTVRENI- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 97 yfgSLYSKKLLS----------IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKV 166
Cdd:TIGR01184 76 ---ALAVDRVLPdlskserraiVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152
|
170 180 190
....*....|....*....|....*....|....*....
gi 489525481 167 MKDIILS-EKSKGKTIILTTHNMLDATELCDRVAFIVNG 204
Cdd:TIGR01184 153 LQEELMQiWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-230 |
5.54e-21 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 89.30 E-value: 5.54e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFY------- 73
Cdd:PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLarrlall 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 74 -------ENIGVdfefpslyEKLTAIEN---LKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKAL 143
Cdd:PRK11231 82 pqhhltpEGITV--------RELVAYGRspwLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 144 LHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNlIMSKGAIK 223
Cdd:PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEE-VMTPGLLR 232
|
....*..
gi 489525481 224 vryTYFD 230
Cdd:PRK11231 233 ---TVFD 236
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
2-201 |
5.61e-21 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 89.56 E-value: 5.61e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTD-RDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNK-----FYEN 75
Cdd:PRK15056 7 IVVNDVTVTWRNgHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKnlvayVPQS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 76 IGVDFEFPSLYEKLTAIENLKYFGSLY---SKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFL 152
Cdd:PRK15056 87 EEVDWSFPVLVEDVVMMGRYGHMGWLRrakKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 489525481 153 DEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFI 201
Cdd:PRK15056 167 DEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV 215
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
17-198 |
6.98e-21 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 91.90 E-value: 6.98e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNK--FYENIGVDFEFPSLYEKLTAIEN 94
Cdd:PRK11288 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTaaLAAGVAIIYQELHLVPEMTVAEN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 95 LkYFGSLYSK------KLLSID--ELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKV 166
Cdd:PRK11288 100 L-YLGQLPHKggivnrRLLNYEarEQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQ 178
|
170 180 190
....*....|....*....|....*....|..
gi 489525481 167 MKDIILSEKSKGKTIILTTHNMLDATELCDRV 198
Cdd:PRK11288 179 LFRVIRELRAEGRVILYVSHRMEEIFALCDAI 210
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-212 |
9.98e-21 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 88.68 E-value: 9.98e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE---------SKR---- 67
Cdd:PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPladwspaelARRravl 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 68 --HSNkfyenigVDFEFP----------SLYEKLTAIENLkyfgslyskkllsIDELLKSVGLENEANKRVSEYSKGMKS 135
Cdd:PRK13548 82 pqHSS-------LSFPFTveevvamgraPHGLSRAEDDAL-------------VAAALAQVDLAHLAGRDYPQLSGGEQQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 136 RLNFIKAL--LHNPD----ILFLDEPTSGLDPSNS-KVMKdiILSE--KSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK13548 142 RVQLARVLaqLWEPDgpprWLLLDEPTSALDLAHQhHVLR--LARQlaHERGLAVIVVLHDLNLAARYADRIVLLHQGRL 219
|
....*.
gi 489525481 207 SALDTP 212
Cdd:PRK13548 220 VADGTP 225
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-229 |
1.04e-20 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 91.42 E-value: 1.04e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDF--LQNINFEVGKGEILGFLGPSGAGKSTLqkilIGMITNY----GGSVIVNGVESKrhsnkfyen 75
Cdd:PRK11160 339 LTLNNVSFTYPDQPQpvLKGLSLQIKAGEKVALLGRTGCGKSTL----LQLLTRAwdpqQGEILLNGQPIA--------- 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 76 igvDFEFPSLYEKLTAI------------ENLkyfgsLYSKKLLSIDEL---LKSVGLEN--EANKRVSEY--------S 130
Cdd:PRK11160 406 ---DYSEAALRQAISVVsqrvhlfsatlrDNL-----LLAAPNASDEALievLQQVGLEKllEDDKGLNAWlgeggrqlS 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 131 KGMKSRLNFIKALLHNPDILFLDEPTSGLDP-SNSKVMKdiILSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISAL 209
Cdd:PRK11160 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAeTERQILE--LLAEHAQNKTVLMITHR-LTGLEQFDRICVMDNGQIIEQ 554
|
250 260
....*....|....*....|
gi 489525481 210 DTPHNLIMSKGaikvRYTYF 229
Cdd:PRK11160 555 GTHQELLAQQG----RYYQL 570
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
3-206 |
1.07e-20 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 86.72 E-value: 1.07e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 3 TVDDLSFsytdRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDFeF 82
Cdd:cd03215 6 EVRGLSV----KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAY-V 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 83 P------SLYEKLTAIENLkyfgslyskkllSIDELLksvgleneankrvseySKGMKSRLNFIKALLHNPDILFLDEPT 156
Cdd:cd03215 81 PedrkreGLVLDLSVAENI------------ALSSLL----------------SGGNQQKVVLARWLARDPRVLILDEPT 132
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 489525481 157 SGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
2-212 |
1.29e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 88.91 E-value: 1.29e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDR---DF--LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVN------GVESKRHSN 70
Cdd:PRK13645 7 IILDNVSYTYAKKtpfEFkaLNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGdyaipaNLKKIKEVK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 71 KFYENIGVDFEFPSLYEKLTAIENLKYFGSLY-----SKKLLSIDELLKSVGLENEANKRVS-EYSKGMKSRLNFIKALL 144
Cdd:PRK13645 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNlgenkQEAYKKVPELLKLVQLPEDYVKRSPfELSGGQKRRVALAGIIA 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 145 HNPDILFLDEPTSGLDPSNSKVMKDIILS-EKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTP 212
Cdd:PRK13645 167 MDGNTLVLDEPTGGLDPKGEEDFINLFERlNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
1-206 |
2.17e-20 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 87.33 E-value: 2.17e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYtdrdflQNI----NFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE------SKRH-S 69
Cdd:PRK10771 1 MLKLTDITWLY------HHLpmrfDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDhtttppSRRPvS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 70 NKFYENigvdfefpSLYEKLTAIEN--------LKyfgsLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIK 141
Cdd:PRK10771 75 MLFQEN--------NLFSHLTVAQNiglglnpgLK----LNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALAR 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 142 ALLHNPDILFLDEPTSGLDPSNSKVMKDiILSE--KSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK10771 143 CLVREQPILLLDEPFSALDPALRQEMLT-LVSQvcQERQLTLLMVSHSLEDAARIAPRSLVVADGRI 208
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-212 |
2.33e-20 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 88.15 E-value: 2.33e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSY--TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHS---------- 69
Cdd:PRK13635 6 IRVEHISFRYpdAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETvwdvrrqvgm 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 70 ------NKF------------YENIGVdfefpslyEKLTAIENlkyfgslyskkllsIDELLKSVGLENEANKRVSEYSK 131
Cdd:PRK13635 86 vfqnpdNQFvgatvqddvafgLENIGV--------PREEMVER--------------VDQALRQVGMEDFLNREPHRLSG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 132 GMKSRLNFIKALLHNPDILFLDEPTSGLDP-SNSKVMKDIILSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISALD 210
Cdd:PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPrGRREVLETVRQLKEQKGITVLSITHD-LDEAAQADRVIVMNKGEILEEG 222
|
..
gi 489525481 211 TP 212
Cdd:PRK13635 223 TP 224
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1-191 |
2.43e-20 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 86.38 E-value: 2.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMIT---NYGGSVIVNGVE------SKRHsnk 71
Cdd:COG4136 1 MLSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSpafSASGEVLLNGRRltalpaEQRR--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 72 fyenIGVDFEFPSLYEKLTAIENLKyFGsL-----YSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHN 146
Cdd:COG4136 78 ----IGILFQDDLLFPHLSVGENLA-FA-LpptigRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAE 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 489525481 147 PDILFLDEPTSGLDPSNSKVMKDIILSE-KSKGKTIILTTHNMLDA 191
Cdd:COG4136 152 PRALLLDEPFSKLDAALRAQFREFVFEQiRQRGIPALLVTHDEEDA 197
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
2-215 |
3.20e-20 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 87.43 E-value: 3.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESkrhsNKFYENIGVDFE 81
Cdd:PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL----AEAREDTRLMFQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 82 FPSLYEKLTAIEN--LKYFGSLYSKKLlsidELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGL 159
Cdd:PRK11247 89 DARLLPWKKVIDNvgLGLKGQWRDAAL----QALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGAL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 160 DPSNSKVMKDIILS-EKSKGKTIILTTHNMLDATELCDRVAFIVNGKIsALDTPHNL 215
Cdd:PRK11247 165 DALTRIEMQDLIESlWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI-GLDLTVDL 220
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-205 |
3.65e-20 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 84.04 E-value: 3.65e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVivngvesKRHSNkfyenigvdfe 81
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV-------TWGST----------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 82 fpslyekltaiENLKYFgslyskkllsidellksvgleneankrvSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDP 161
Cdd:cd03221 63 -----------VKIGYF----------------------------EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 489525481 162 SNSKVMKDIIlseKSKGKTIILTTH--NMLDATelCDRVAFIVNGK 205
Cdd:cd03221 104 ESIEALEEAL---KEYPGTVILVSHdrYFLDQV--ATKIIELEDGK 144
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-217 |
1.15e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 86.32 E-value: 1.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSY---TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNG-------VESKRHsn 70
Cdd:PRK13650 4 IIEVKNLTFKYkedQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGdllteenVWDIRH-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 71 kfyeNIGVDFEFPSLYEKLTAIENLKYFG----SLYSKKLLS-IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLH 145
Cdd:PRK13650 82 ----KIGMVFQNPDNQFVGATVEDDVAFGlenkGIPHEEMKErVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAM 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489525481 146 NPDILFLDEPTSGLDPSNS----KVMKDIilsEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISALDTPHNLIM 217
Cdd:PRK13650 158 RPKIIILDEATSMLDPEGRleliKTIKGI---RDDYQMTVISITHD-LDEVALSDRVLVMKNGQVESTSTPRELFS 229
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
2-212 |
1.28e-19 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 84.85 E-value: 1.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTD--RDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-SKRHSNKFYENIGV 78
Cdd:cd03244 3 IEFKNVSLRYRPnlPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDiSKIGLHDLRSRISI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFPSLYEKlTAIENLKYFGSLYSKKLLSIdelLKSVGLENEANK-------RVSE----YSKGMKSRLNFIKALLHNP 147
Cdd:cd03244 83 IPQDPVLFSG-TIRSNLDPFGEYSDEELWQA---LERVGLKEFVESlpggldtVVEEggenLSVGQRQLLCLARALLRKS 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489525481 148 DILFLDEPTSGLDPSNSKVMKDIIlSEKSKGKTIILTTH---NMLDatelCDRVAFIVNGKISALDTP 212
Cdd:cd03244 159 KILVLDEATASVDPETDALIQKTI-REAFKDCTVLTIAHrldTIID----SDRILVLDKGRVVEFDSP 221
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
2-206 |
1.34e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 86.29 E-value: 1.34e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSY-----TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESK-RHSNKFYE- 74
Cdd:PRK13651 3 IKVKNIVKIFnkklpTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKnKKKTKEKEk 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 -----------------------NIGVDFEFP--SLYEKltAIENLKYFGSLY-------SKKLLSidELLKSVGLENEA 122
Cdd:PRK13651 83 vleklviqktrfkkikkikeirrRVGVVFQFAeyQLFEQ--TIEKDIIFGPVSmgvskeeAKKRAA--KYIELVGLDESY 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 123 NKRVS-EYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFI 201
Cdd:PRK13651 159 LQRSPfELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238
|
....*
gi 489525481 202 VNGKI 206
Cdd:PRK13651 239 KDGKI 243
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
4-206 |
1.43e-19 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 85.12 E-value: 1.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 4 VDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGmITNY---GGSVIVNGVE------SKRhsnkFYE 74
Cdd:COG0396 3 IKNLHVSVEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMG-HPKYevtSGSILLDGEDilelspDER----ARA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 NIGVDF----EFP--SLYEKLTAIENLKYFGSLYSKKLLS-IDELLKSVGLENEANKR-VSE-YSKGMKSRLNFIKALLH 145
Cdd:COG0396 78 GIFLAFqypvEIPgvSVSNFLRTALNARRGEELSAREFLKlLKEKMKELGLDEDFLDRyVNEgFSGGEKKRNEILQMLLL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489525481 146 NPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHN--MLDATElCDRVAFIVNGKI 206
Cdd:COG0396 158 EPKLAILDETDSGLDIDALRIVAEGVNKLRSPDRGILIITHYqrILDYIK-PDFVHVLVDGRI 219
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-212 |
2.42e-19 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 86.82 E-value: 2.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNG--VESK------RHSNKF 72
Cdd:PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGddVEALsaraasRRVASV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 73 YENIGVDFEFpslyEKLTAIE-----NLKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNP 147
Cdd:PRK09536 83 PQDTSLSFEF----DVRQVVEmgrtpHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQAT 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489525481 148 DILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTP 212
Cdd:PRK09536 159 PVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPP 223
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
2-187 |
3.11e-19 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 87.03 E-value: 3.11e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSY-TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-SKRHSNKFYENIGVD 79
Cdd:TIGR02868 335 LELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPvSSLDQDEVRRRVSVC 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 FEFPSLYEKlTAIENLkyfgsLYSKKLLSIDEL---LKSVGLEN-------EANKRVSE----YSKGMKSRLNFIKALLH 145
Cdd:TIGR02868 415 AQDAHLFDT-TVRENL-----RLARPDATDEELwaaLERVGLADwlralpdGLDTVLGEggarLSGGERQRLALARALLA 488
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 489525481 146 NPDILFLDEPTSGLDPSNSKVMKDIILSEKSkGKTIILTTHN 187
Cdd:TIGR02868 489 DAPILLLDEPTEHLDAETADELLEDLLAALS-GRTVVLITHH 529
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
2-223 |
3.15e-19 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 87.47 E-value: 3.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSY---TDRDFLQNINFEVGKGEILGFLGPSGAGKSTlqkiLIGMITNY----GGSVIVNGVESKRHSNKFY- 73
Cdd:TIGR00958 479 IEFQDVSFSYpnrPDVPVLKGLTFTLHPGEVVALVGPSGSGKST----VAALLQNLyqptGGQVLLDGVPLVQYDHHYLh 554
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 74 ENIGVDFEFPSLYEKlTAIENLKYfGSLYSKKllsiDELLKSV----------GLENEANKRVSEY----SKGMKSRLNF 139
Cdd:TIGR00958 555 RQVALVGQEPVLFSG-SVRENIAY-GLTDTPD----EEIMAAAkaanahdfimEFPNGYDTEVGEKgsqlSGGQKQRIAI 628
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 140 IKALLHNPDILFLDEPTSGLDPSNSKVMKDiilSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISALDTPHNLIMSK 219
Cdd:TIGR00958 629 ARALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHR-LSTVERADQILVLKKGSVVEMGTHKQLMEDQ 704
|
....
gi 489525481 220 GAIK 223
Cdd:TIGR00958 705 GCYK 708
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
2-161 |
3.42e-19 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 87.10 E-value: 3.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNG--VESKRHSNKFYENI--- 76
Cdd:NF033858 2 ARLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGgdMADARHRRAVCPRIaym 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 77 ----GvdfefPSLYEKLTAIENLKYFGSLYSkklLS-------IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLH 145
Cdd:NF033858 82 pqglG-----KNLYPTLSVFENLDFFGRLFG---QDaaerrrrIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIH 153
|
170
....*....|....*.
gi 489525481 146 NPDILFLDEPTSGLDP 161
Cdd:NF033858 154 DPDLLILDEPTTGVDP 169
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1-215 |
3.51e-19 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 84.82 E-value: 3.51e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHS-NKFYE---NI 76
Cdd:PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSrSRLYTvrkRM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 77 GVDFEFPSLYEKLTAIENLKYfgSLYSKKLLSiDELLKS--------VGLENEANKRVSEYSKGMKSRLNFIKALLHNPD 148
Cdd:PRK11831 87 SMLFQSGALFTDMNVFDNVAY--PLREHTQLP-APLLHStvmmkleaVGLRGAAKLMPSELSGGMARRAALARAIALEPD 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 149 ILFLDEPTSGLDPSNSKVMKDIIlSE--KSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:PRK11831 164 LIMFDEPFVGQDPITMGVLVKLI-SElnSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
4-198 |
4.02e-19 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 82.93 E-value: 4.02e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 4 VDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDFEFP 83
Cdd:cd03231 3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 84 SLYEKLTAIENLKYFGSLYSKKllSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSN 163
Cdd:cd03231 83 GIKTTLSVLENLRFWHADHSDE--QVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAG 160
|
170 180 190
....*....|....*....|....*....|....*
gi 489525481 164 SKVMKDIILSEKSKGKTIILTTHNMLDATELCDRV 198
Cdd:cd03231 161 VARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARE 195
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
17-219 |
5.05e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 84.90 E-value: 5.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSV----IVNGVESKRHSNKFYEN-------------IGVD 79
Cdd:PRK13631 42 LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdIYIGDKKNNHELITNPYskkiknfkelrrrVSMV 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 FEFPSLYEKLTAIENLKYFG--SLYSKKLLSIDE---LLKSVGLENEANKRVS-EYSKGMKSRLNFIKALLHNPDILFLD 153
Cdd:PRK13631 122 FQFPEYQLFKDTIEKDIMFGpvALGVKKSEAKKLakfYLNKMGLDDSYLERSPfGLSGGQKRRVAIAGILAIQPEILIFD 201
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489525481 154 EPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMSK 219
Cdd:PRK13631 202 EPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
2-219 |
5.13e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 84.45 E-value: 5.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYT-----DRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-----SKRHSNK 71
Cdd:PRK13646 3 IRFDNVSYTYQkgtpyEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITithktKDKYIRP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 72 FYENIGVDFEFP--SLYEKltAIENLKYFGSLYSKklLSIDE-------LLKSVGLE-NEANKRVSEYSKGMKSRLNFIK 141
Cdd:PRK13646 83 VRKRIGMVFQFPesQLFED--TVEREIIFGPKNFK--MNLDEvknyahrLLMDLGFSrDVMSQSPFQMSGGQMRKIAIVS 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 142 ALLHNPDILFLDEPTSGLDP-SNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMSK 219
Cdd:PRK13646 159 ILAMNPDIIVLDEPTAGLDPqSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDK 237
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-212 |
6.95e-19 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 85.27 E-value: 6.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKrHSNKFYENIGVDF 80
Cdd:PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS-HVPPYQRPINMMF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EFPSLYEKLTAIENLKyFGsLYSKKL------LSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDE 154
Cdd:PRK11607 98 QSYALFPHMTVEQNIA-FG-LKQDKLpkaeiaSRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 155 PTSGLDPSNSKVMK----DIIlseKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTP 212
Cdd:PRK11607 176 PMGALDKKLRDRMQlevvDIL---ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEP 234
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-212 |
7.18e-19 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 83.50 E-value: 7.18e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGV-- 78
Cdd:PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVvr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFPSLYEKLTAIENL----------KYFGSLY---------SKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNF 139
Cdd:PRK11300 85 TFQHVRLFREMTVIENLlvaqhqqlktGLFSGLLktpafrraeSEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEI 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489525481 140 IKALLHNPDILFLDEPTSGLDPSNSKVMKDIILS-EKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTP 212
Cdd:PRK11300 165 ARCMVTQPEILMLDEPAAGLNPKETKELDELIAElRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTP 238
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
2-208 |
8.81e-19 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 85.96 E-value: 8.81e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSY--TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESkRHSNK--FYENIG 77
Cdd:COG4618 331 LSVENLTVVPpgSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADL-SQWDReeLGRHIG 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 78 -----VDFeFPSlyeklTAIENLKYFGSLYSKK------LLSIDELLksVGLENEANKRVSE----YSKGMKSRLNFIKA 142
Cdd:COG4618 410 ylpqdVEL-FDG-----TIAENIARFGDADPEKvvaaakLAGVHEMI--LRLPDGYDTRIGEggarLSGGQRQRIGLARA 481
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489525481 143 LLHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMlDATELCDRVAFIVNGKISA 208
Cdd:COG4618 482 LYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRP-SLLAAVDKLLVLRDGRVQA 546
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
17-220 |
1.69e-18 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 84.88 E-value: 1.69e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMIT--NYGGSVIVNGVESKRHSNKFYENIGVDF--EFPSLYEKLTAI 92
Cdd:TIGR02633 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPhgTWDGEIYWSGSPLKASNIRDTERAGIVIihQELTLVPELSVA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 93 EN------LKYFGSL--YSKKLLSIDELLKSVGLENEANKR-VSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSN 163
Cdd:TIGR02633 97 ENiflgneITLPGGRmaYNAMYLRAKNLLRELQLDADNVTRpVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKE 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489525481 164 SKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGK------ISALDTPHNLIMSKG 220
Cdd:TIGR02633 177 TEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQhvatkdMSTMSEDDIITMMVG 239
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-212 |
1.83e-18 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 82.47 E-value: 1.83e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE---------SKR---- 67
Cdd:COG4559 1 MLEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPlaawspwelARRravl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 68 --HSnkfyeniGVDFEFP-------------SLYEKLTAIenlkyfgslyskkllsIDELLKSVGLENEANKRVSEYSKG 132
Cdd:COG4559 81 pqHS-------SLAFPFTveevvalgraphgSSAAQDRQI----------------VREALALVGLAHLAGRSYQTLSGG 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 133 MKSRLNFIKAL--LHNPD-----ILFLDEPTSGLDPSN-SKVMKdiILSE-KSKGKTIILTTH--NMldATELCDRVAFI 201
Cdd:COG4559 138 EQQRVQLARVLaqLWEPVdggprWLFLDEPTSALDLAHqHAVLR--LARQlARRGGGVVAVLHdlNL--AAQYADRILLL 213
|
250
....*....|.
gi 489525481 202 VNGKISALDTP 212
Cdd:COG4559 214 HQGRLVAQGTP 224
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-212 |
2.11e-18 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 82.75 E-value: 2.11e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE---SKRHSNKFYENIG 77
Cdd:PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPldySKRGLLALRQQVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 78 VDFEFPSLYEKLTAIEN-----LKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFL 152
Cdd:PRK13638 81 TVFQDPEQQIFYTDIDSdiafsLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 153 DEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTP 212
Cdd:PRK13638 161 DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAP 220
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-229 |
2.97e-18 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 81.46 E-value: 2.97e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNG--VESKRHSNKFYENIGV 78
Cdd:PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGkdITDWQTAKIMREAVAI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFPSLYEKLTAIENLKYFG-----SLYSKKLLSIDELLKSvgLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLD 153
Cdd:PRK11614 85 VPEGRRVFSRMTVEENLAMGGffaerDQFQERIKWVYELFPR--LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489525481 154 EPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMSKGaikVRYTYF 229
Cdd:PRK11614 163 EPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEA---VRSAYL 235
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
1-191 |
3.27e-18 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 81.05 E-value: 3.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKR-HSNKFYENIGvd 79
Cdd:PRK13543 11 LLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRgDRSRFMAYLG-- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 fEFPSLYEKLTAIENLKYFGSLYSKKLLSI-DELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSG 158
Cdd:PRK13543 89 -HLPGLKADLSTLENLHFLCGLHGRRAKQMpGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167
|
170 180 190
....*....|....*....|....*....|...
gi 489525481 159 LDPSNSKVMKDIILSEKSKGKTIILTTHNMLDA 191
Cdd:PRK13543 168 LDLEGITLVNRMISAHLRGGGAALVTTHGAYAA 200
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
2-206 |
3.70e-18 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 80.26 E-value: 3.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGmITNY---GGSVIVNGVESKRHS--NKFYENI 76
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPKYevtEGEILFKGEDITDLPpeERARLGI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 77 GVDFEFPSlyekltAIENLKyfgslyskkllsIDELLKSVgleNEAnkrvseYSKGMKSRLNFIKALLHNPDILFLDEPT 156
Cdd:cd03217 80 FLAFQYPP------EIPGVK------------NADFLRYV---NEG------FSGGEKKRNEILQLLLLEPDLAILDEPD 132
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 489525481 157 SGLDPSNSKVMKDIILSEKSKGKTIILTTHN--MLDATElCDRVAFIVNGKI 206
Cdd:cd03217 133 SGLDIDALRLVAEVINKLREEGKSVLIITHYqrLLDYIK-PDRVHVLYDGRI 183
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
2-222 |
4.41e-18 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 80.74 E-value: 4.41e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRD--FLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKrhsnkfyenigvD 79
Cdd:cd03251 1 VEFKNVTFRYPGDGppVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVR------------D 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 FEFPSLYEKL------------TAIENLKY--FGS-----LYSKKLLSIDELLKSV--GLENEANKRVSEYSKGMKSRLN 138
Cdd:cd03251 69 YTLASLRRQIglvsqdvflfndTVAENIAYgrPGAtreevEEAARAANAHEFIMELpeGYDTVIGERGVKLSGGQRQRIA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 139 FIKALLHNPDILFLDEPTSGLDPSNSKVMKDiILSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISALDTpHNLIMS 218
Cdd:cd03251 149 IARALLKDPPILILDEATSALDTESERLVQA-ALERLMKNRTTFVIAHR-LSTIENADRIVVLEDGKIVERGT-HEELLA 225
|
....
gi 489525481 219 KGAI 222
Cdd:cd03251 226 QGGV 229
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
2-212 |
5.55e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 81.38 E-value: 5.55e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTD--RDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMI---TNYGGSVIVNGVE-SKRHSNKFYEN 75
Cdd:PRK13640 6 VEFKHVSFTYPDskKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLlpdDNPNSKITVDGITlTAKTVWDIREK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 76 IGVDFEFPSLYEKLTAIENLKYFG----SLYSKKLLSI-DELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDIL 150
Cdd:PRK13640 86 VGIVFQNPDNQFVGATVGDDVAFGlenrAVPRPEMIKIvRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKII 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489525481 151 FLDEPTSGLDPS-NSKVMKDIILSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISALDTP 212
Cdd:PRK13640 166 ILDESTSMLDPAgKEQILKLIRKLKKKNNLTVISITHD-IDEANMADQVLVLDDGKLLAQGSP 227
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
2-215 |
7.01e-18 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 80.78 E-value: 7.01e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNG--------------VESKR 67
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGqtinlvrdkdgqlkVADKN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 68 HSNKFYENIGVDFEFPSLYEKLTAIEN-----LKYFGSLYSKKLLSIDELLKSVGLENEAN-KRVSEYSKGMKSRLNFIK 141
Cdd:PRK10619 86 QLRLLRTRLTMVFQHFNLWSHMTVLENvmeapIQVLGLSKQEARERAVKYLAKVGIDERAQgKYPVHLSGGQQQRVSIAR 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489525481 142 ALLHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:PRK10619 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
2-212 |
7.95e-18 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 82.38 E-value: 7.95e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGM--ITN---YGGSVIVNGVE-SKRhsnkfyeN 75
Cdd:PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLedITSgdlFIGEKRMNDVPpAER-------G 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 76 IGVDFEFPSLYEKLTAIENLKYFGSLYSKKLLSIDELLKSVG----LENEANKRVSEYSKGMKSRLNFIKALLHNPDILF 151
Cdd:PRK11000 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAevlqLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 152 LDEPTSGLDPSNSKVMK-DIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTP 212
Cdd:PRK11000 157 LDEPLSNLDAALRVQMRiEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKP 218
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-226 |
1.06e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 80.91 E-value: 1.06e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 6 DLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITN-----YGGSVIVNG--VESKRHSNKFYENIGV 78
Cdd:PRK14271 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKvsgyrYSGDVLLGGrsIFNYRDVLEFRRRVGM 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFPSLYeKLTAIENLkyFGSLYSKKLLSIDEL-------LKSVGLENEANKRVSE----YSKGMKSRLNFIKALLHNP 147
Cdd:PRK14271 106 LFQRPNPF-PMSIMDNV--LAGVRAHKLVPRKEFrgvaqarLTEVGLWDAVKDRLSDspfrLSGGQQQLLCLARTLAVNP 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 148 DILFLDEPTSGLDPSNSKVMKDIILSEKSKgKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMS-KGAIKVRY 226
Cdd:PRK14271 183 EVLLLDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSpKHAETARY 261
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
1-216 |
1.15e-17 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 80.13 E-value: 1.15e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFY------- 73
Cdd:COG4604 1 MIEIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELakrlail 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 74 --ENigvdfEFPSlyeKLTaIENLKYFGSL-YSKKLLS------IDELLKSVGLENEANKRVSEYSKGMKSRLnFIK-AL 143
Cdd:COG4604 81 rqEN-----HINS---RLT-VRELVAFGRFpYSKGRLTaedreiIDEAIAYLDLEDLADRYLDELSGGQRQRA-FIAmVL 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 144 LHNPDILFLDEPTSGLDPSNSKVMKDII--LSEKsKGKTIILTTH--NMldATELCDRVAFIVNGKISALDTPHNLI 216
Cdd:COG4604 151 AQDTDYVLLDEPLNNLDMKHSVQMMKLLrrLADE-LGKTVVIVLHdiNF--ASCYADHIVAMKDGRVVAQGTPEEII 224
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
3-186 |
1.16e-17 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 82.62 E-value: 1.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 3 TVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMI--TNYGGSVIVNGvesKRHSNKFYENIGVDF 80
Cdd:PLN03211 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIqgNNFTGTILANN---RKPTKQILKRTGFVT 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EFPSLYEKLTAIENLkYFGSLY--------SKKLLSIDELLKSVGL---ENE--ANKRVSEYSKGMKSRLNFIKALLHNP 147
Cdd:PLN03211 147 QDDILYPHLTVRETL-VFCSLLrlpksltkQEKILVAESVISELGLtkcENTiiGNSFIRGISGGERKRVSIAHEMLINP 225
|
170 180 190
....*....|....*....|....*....|....*....
gi 489525481 148 DILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTH 186
Cdd:PLN03211 226 SLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMH 264
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-206 |
1.42e-17 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 82.20 E-value: 1.42e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLS-FSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMItNYGGSVIVNGVESKRHSNKFY-ENIGVD 79
Cdd:PRK11174 350 IEAEDLEiLSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWrKHLSWV 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 FEFPSLYEKlTAIENLkyfgsLYSKKLLS---IDELLK-----------SVGLENEANKRVSEYSKGMKSRLNFIKALLH 145
Cdd:PRK11174 429 GQNPQLPHG-TLRDNV-----LLGNPDASdeqLQQALEnawvseflpllPQGLDTPIGDQAAGLSVGQAQRLALARALLQ 502
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 146 NPDILFLDEPTSGLDP-SNSKVMKDiiLSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKI 206
Cdd:PRK11174 503 PCQLLLLDEPTASLDAhSEQLVMQA--LNAASRRQTTLMVTHQ-LEDLAQWDQIWVMQDGQI 561
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
5-200 |
2.04e-17 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 79.83 E-value: 2.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 5 DDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKI------LI------GMITNYGGSVI---VNGVESKRHs 69
Cdd:PRK14243 14 ENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCfnrlndLIpgfrveGKVTFHGKNLYapdVDPVEVRRR- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 70 nkfyenIGVDFEFPSLYEKlTAIENLKYfGSLYSKKLLSIDEL----LKSVGLENEANKRVSE----YSKGMKSRLNFIK 141
Cdd:PRK14243 93 ------IGMVFQKPNPFPK-SIYDNIAY-GARINGYKGDMDELversLRQAALWDEVKDKLKQsglsLSGGQQQRLCIAR 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 142 ALLHNPDILFLDEPTSGLDPSNSKVMKDIIlSEKSKGKTIILTTHNMLDATELCDRVAF 200
Cdd:PRK14243 165 AIAVQPEVILMDEPCSALDPISTLRIEELM-HELKEQYTIIIVTHNMQQAARVSDMTAF 222
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
5-198 |
2.26e-17 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 78.99 E-value: 2.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 5 DDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFY-ENIGVDFEFP 83
Cdd:PRK10247 11 QNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYrQQVSYCAQTP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 84 SLYEKlTAIENLKyFGSLYSKKLLSIDELLKSV---GL-ENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGL 159
Cdd:PRK10247 91 TLFGD-TVYDNLI-FPWQIRNQQPDPAIFLDDLerfALpDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSAL 168
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 489525481 160 DPSNSKVMKDIILS-EKSKGKTIILTTHnmlDATEL--CDRV 198
Cdd:PRK10247 169 DESNKHNVNEIIHRyVREQNIAVLWVTH---DKDEInhADKV 207
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1-195 |
2.81e-17 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 78.07 E-value: 2.81e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDF 80
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EFPSLYEKLTAIENLkYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLD 160
Cdd:PRK13540 81 HRSGINPYLTLRENC-LYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 489525481 161 PSNSKVMKDIILSEKSKGKTIILTTH-----NMLDATELC 195
Cdd:PRK13540 160 ELSLLTIITKIQEHRAKGGAVLLTSHqdlplNKADYEEYH 199
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1-186 |
3.34e-17 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 77.92 E-value: 3.34e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYEN---IG 77
Cdd:PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDllyLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 78 vdfEFPSLYEKLTAIENLKYFGSLYSkkLLSIDEL---LKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDE 154
Cdd:PRK13538 81 ---HQPGIKTELTALENLRFYQRLHG--PGDDEALweaLAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDE 155
|
170 180 190
....*....|....*....|....*....|..
gi 489525481 155 PTSGLDPSNSKVMKDIILSEKSKGKTIILTTH 186
Cdd:PRK13538 156 PFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
17-206 |
1.00e-16 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 77.82 E-value: 1.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGV------ESKRhsnkfYENIGVDFEFPSL--YEK 88
Cdd:COG1101 22 LDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKdvtklpEYKR-----AKYIGRVFQDPMMgtAPS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 89 LTAIENL-------KYFG---SLYSKKLLSIDELLKSV--GLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPT 156
Cdd:COG1101 97 MTIEENLalayrrgKRRGlrrGLTKKRRELFRELLATLglGLENRLDTKVGLLSGGQRQALSLLMATLTKPKLLLLDEHT 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 489525481 157 SGLDPSNS-KVM---KDIIlseKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:COG1101 177 AALDPKTAaLVLeltEKIV---EENNLTTLMVTHNMEQALDYGNRLIMMHEGRI 227
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-215 |
1.19e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 77.48 E-value: 1.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSY-TDRDF-LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHS-NKFYENIG 77
Cdd:PRK13648 7 IIVFKNVSFQYqSDASFtLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNfEKLRKHIG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 78 VDFEFPS--------LYEKLTAIENlkyFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDI 149
Cdd:PRK13648 87 IVFQNPDnqfvgsivKYDVAFGLEN---HAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 150 LFLDEPTSGLDPSNSKVMKDIILSEKS-KGKTIILTTHNMLDATElCDRVAFIVNGKISALDTPHNL 215
Cdd:PRK13648 164 IILDEATSMLDPDARQNLLDLVRKVKSeHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI 229
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
15-206 |
1.28e-16 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 79.38 E-value: 1.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 15 DFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFY-----ENIGVDFEFPSLYEKL 89
Cdd:PRK10535 22 EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALaqlrrEHFGFIFQRYHLLSHL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 90 TAIENLK----YFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSK 165
Cdd:PRK10535 102 TAAQNVEvpavYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGE 181
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 489525481 166 VMKDIILSEKSKGKTIILTTHNMLDATElCDRVAFIVNGKI 206
Cdd:PRK10535 182 EVMAILHQLRDRGHTVIIVTHDPQVAAQ-AERVIEIRDGEI 221
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
4-206 |
1.62e-16 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 79.16 E-value: 1.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 4 VDDLSFSYTDRDF---LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKrhsnkfyenIGVDf 80
Cdd:PRK13545 24 LKDLFFRSKDGEYhyaLNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL---------IAIS- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 efPSLYEKLTAIENLKYFGSLYSKKLLSIDELLKSV----GLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPT 156
Cdd:PRK13545 94 --SGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIiefaDIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEAL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 489525481 157 SGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK13545 172 SVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQV 221
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
1-206 |
2.24e-16 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 76.76 E-value: 2.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVD- 79
Cdd:COG4598 8 ALEVRDLHKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRLKPDRDGELVPADr 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 -----------FEFPS--LYEKLTAIENLkYFGSLYSKKLlSIDE-------LLKSVGLENEANKRVSEYSKGMKSRLNF 139
Cdd:COG4598 88 rqlqrirtrlgMVFQSfnLWSHMTVLENV-IEAPVHVLGR-PKAEaieraeaLLAKVGLADKRDAYPAHLSGGQQQRAAI 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489525481 140 IKALLHNPDILFLDEPTSGLDPSNS----KVMKDiiLSEksKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:COG4598 166 ARALAMEPEVMLFDEPTSALDPELVgevlKVMRD--LAE--EGRTMLVVTHEMGFARDVSSHVVFLHQGRI 232
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-198 |
3.08e-16 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 75.55 E-value: 3.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYT-------DRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGmitNY---GGSVIVNG-------- 62
Cdd:COG4778 4 LLEVENLSKTFTlhlqggkRLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYG---NYlpdSGSILVRHdggwvdla 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 63 -------VESKRHSnkfyenIGVDFEFPSLYEKLTAIEnlkyfgslyskklLSIDELLKSVGLENEANKRVSE------- 128
Cdd:COG4778 81 qaspreiLALRRRT------IGYVSQFLRVIPRVSALD-------------VVAEPLLERGVDREEARARAREllarlnl 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 129 -----------YSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDR 197
Cdd:COG4778 142 perlwdlppatFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAIIGIFHDEEVREAVADR 221
|
.
gi 489525481 198 V 198
Cdd:COG4778 222 V 222
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
17-206 |
3.35e-16 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 75.59 E-value: 3.35e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGV------ESKRHSNKfYENIGVDFEFPSLYEKLT 90
Cdd:PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQplhqmdEEARAKLR-AKHVGFVFQSFMLIPTLN 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 91 AIENLKYFGSL------YSKKllSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNS 164
Cdd:PRK10584 105 ALENVELPALLrgessrQSRN--GAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG 182
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 489525481 165 KVMKDIILS-EKSKGKTIILTTHNMLDATElCDRVAFIVNGKI 206
Cdd:PRK10584 183 DKIADLLFSlNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQL 224
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
17-211 |
5.31e-16 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 76.70 E-value: 5.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTlqkiliGMITNYggsviVNGVESKRHSNKFY----------ENIGVDFEF-PSL 85
Cdd:NF000106 29 VDGVDLDVREGTVLGVLGP*GAA**R------GALPAH-----V*GPDAGRRPWRF*twcanrralrRTIG*HRPVr*GR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 86 YEKLTAIENLKYFGSLY--SKK--LLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDP 161
Cdd:NF000106 98 RESFSGRENLYMIGR*LdlSRKdaRARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDP 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 489525481 162 SNSKVMKDIILSEKSKGKTIILTTHNMLDATELC------DRVAFIVNGKISALDT 211
Cdd:NF000106 178 RTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAheltviDRGRVIADGKVDELKT 233
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
17-206 |
7.75e-16 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 75.24 E-value: 7.75e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKfyenigvdfefpSLYEKLTAIENLK 96
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISA------------GLSGQLTGIENIE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 97 YFGSLYSKKLLSIDELLKSVGLENEAN----KRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIIL 172
Cdd:PRK13546 108 FKMLCMGFKRKEIKAMTPKIIEFSELGefiyQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIY 187
|
170 180 190
....*....|....*....|....*....|....
gi 489525481 173 SEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK13546 188 EFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKL 221
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
2-186 |
8.53e-16 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 72.96 E-value: 8.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSF-SYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIvngveSKRHSNKFYenigvdf 80
Cdd:cd03223 1 IELENLSLaTPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG-----MPEGEDLLF------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 efpslyekltaIENLKYF--GSL-----Y-SKKLLSIDEllksvgleneankrvseyskgmKSRLNFIKALLHNPDILFL 152
Cdd:cd03223 69 -----------LPQRPYLplGTLreqliYpWDDVLSGGE----------------------QQRLAFARLLLHKPKFVFL 115
|
170 180 190
....*....|....*....|....*....|....
gi 489525481 153 DEPTSGLDPSNSKVMKDIIlseKSKGKTIILTTH 186
Cdd:cd03223 116 DEATSALDEESEDRLYQLL---KELGITVISVGH 146
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
19-215 |
1.06e-15 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 75.91 E-value: 1.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 19 NINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGvESKRHSNKFYENIGVDFEFPSLYEKLTAIEN---- 94
Cdd:PRK11432 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDG-EDVTHRSIQQRDICMVFQSYALFPHMSLGENvgyg 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 95 LKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIILS- 173
Cdd:PRK11432 103 LKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIREl 182
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 489525481 174 EKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:PRK11432 183 QQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-198 |
1.45e-15 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 75.53 E-value: 1.45e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDL--SFSYTDRDF--LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYG---GSVIVNGVE----SKRHS 69
Cdd:PRK09473 12 LLDVKDLrvTFSTPDGDVtaVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGrigGSATFNGREilnlPEKEL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 70 NKFY-ENIGVDFEFP--SLYEKLTAIENLKYFGSLYsKKLLSIDELLKSVGLEN-----EANKRVS----EYSKGMKSRL 137
Cdd:PRK09473 92 NKLRaEQISMIFQDPmtSLNPYMRVGEQLMEVLMLH-KGMSKAEAFEESVRMLDavkmpEARKRMKmyphEFSGGMRQRV 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489525481 138 NFIKALLHNPDILFLDEPTSGLDPS-NSKVMKdiILSE-KSKGKT-IILTTHNMLDATELCDRV 198
Cdd:PRK09473 171 MIAMALLCRPKLLIADEPTTALDVTvQAQIMT--LLNElKREFNTaIIMITHDLGVVAGICDKV 232
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
2-206 |
1.57e-15 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 76.15 E-value: 1.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTD-RDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGV-------ESKRHsnkfy 73
Cdd:PRK13657 335 VEFDDVSFSYDNsRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTdirtvtrASLRR----- 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 74 eNIGVDFEFPSLYEKLTAiENLKYfgslySKKLLSIDELL--------------KSVGLENEANKRVSEYSKGMKSRLNF 139
Cdd:PRK13657 410 -NIAVVFQDAGLFNRSIE-DNIRV-----GRPDATDEEMRaaaeraqahdfierKPDGYDTVVGERGRQLSGGERQRLAI 482
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 140 IKALLHNPDILFLDEPTSGLDPSNSKVMKDiILSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKI 206
Cdd:PRK13657 483 ARALLKDPPILILDEATSALDVETEAKVKA-ALDELMKGRTTFIIAHR-LSTVRNADRILVFDNGRV 547
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
3-208 |
1.73e-15 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 75.83 E-value: 1.73e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 3 TVDDLSfsytDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHS------NKF---- 72
Cdd:COG1129 258 EVEGLS----VGGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSprdairAGIayvp 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 73 --------------YENIGvdfefpslyekLTAIENLKYFGSLYSKKLLSI-DELLKSVGLE-NEANKRVSEYSKGMKSR 136
Cdd:COG1129 334 edrkgeglvldlsiRENIT-----------LASLDRLSRGGLLDRRRERALaEEYIKRLRIKtPSPEQPVGNLSGGNQQK 402
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489525481 137 LNFIKALLHNPDILFLDEPTSGLDPsNSKVmkDI--ILSE-KSKGKTIILTTHNMLDATELCDRVAFIVNGKISA 208
Cdd:COG1129 403 VVLAKWLATDPKVLILDEPTRGIDV-GAKA--EIyrLIRElAAEGKAVIVISSELPELLGLSDRILVMREGRIVG 474
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
6-210 |
7.65e-15 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 74.24 E-value: 7.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 6 DLSFSYTDRDF-LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGV----ESKRHSNKFYENIGVDF 80
Cdd:PRK10522 327 NVTFAYQDNGFsVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKpvtaEQPEDYRKLFSAVFTDF 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EfpsLYEKLTAIENlkyfgslYSKKLLSIDELLKSVGLEN---EANKRVS--EYSKGMKSRLNFIKALLHNPDILFLDEP 155
Cdd:PRK10522 407 H---LFDQLLGPEG-------KPANPALVEKWLERLKMAHkleLEDGRISnlKLSKGQKKRLALLLALAEERDILLLDEW 476
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 156 TSGLDPSNSKVMKDIILSE-KSKGKTIILTTHNmlDAT-ELCDRVAFIVNGKISALD 210
Cdd:PRK10522 477 AADQDPHFRREFYQVLLPLlQEMGKTIFAISHD--DHYfIHADRLLEMRNGQLSELT 531
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
1-215 |
1.26e-14 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 72.83 E-value: 1.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDdlsFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNG-------------VEsKR 67
Cdd:COG4148 2 MLEVD---FRLRRGGFTLDVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGevlqdsargiflpPH-RR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 68 HsnkfyenIGVDFEFPSLYEKLTAIENLKYfG---SLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALL 144
Cdd:COG4148 78 R-------IGYVFQEARLFPHLSVRGNLLY-GrkrAPRAERRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489525481 145 HNPDILFLDEPTSGLDPSNskvmKDIILS--EKSKGKT---IILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:COG4148 150 SSPRLLLMDEPLAALDLAR----KAEILPylERLRDELdipILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEV 221
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
6-198 |
1.32e-14 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 71.67 E-value: 1.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 6 DLSFSYTDRDFLQNINF-EVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESkrhSNKfYENIGVDFEFpS 84
Cdd:cd03237 3 YPTMKKTLGEFTLEVEGgSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV---SYK-PQYIKADYEG-T 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 85 LYEKLTAIENLKYFGSLYskkllsIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSN- 163
Cdd:cd03237 78 VRDLLSSITKDFYTHPYF------KTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQr 151
|
170 180 190
....*....|....*....|....*....|....*...
gi 489525481 164 ---SKVMKDIILSEKskgKTIILTTHNMLDATELCDRV 198
Cdd:cd03237 152 lmaSKVIRRFAENNE---KTAFVVEHDIIMIDYLADRL 186
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
17-210 |
1.75e-14 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 72.90 E-value: 1.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGM--ITNYGGSVIVNGVESKRHSNKFYENIGVDF---EFpSLYEKLTA 91
Cdd:NF040905 17 LDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVypHGSYEGEILFDGEVCRFKDIRDSEALGIVIihqEL-ALIPYLSI 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 92 IENLkYFGSLYSKKLLsID---------ELLKSVGLENEANKRVSEYSKGmKSRLNFI-KALLHNPDILFLDEPTSGLDP 161
Cdd:NF040905 96 AENI-FLGNERAKRGV-IDwnetnrrarELLAKVGLDESPDTLVTDIGVG-KQQLVEIaKALSKDVKLLILDEPTAALNE 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 489525481 162 SNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGK-ISALD 210
Cdd:NF040905 173 EDSAALLDLLLELKAQGITSIIISHKLNEIRRVADSITVLRDGRtIETLD 222
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1-218 |
2.05e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 71.66 E-value: 2.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSY---TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-SKRHSNKFYENI 76
Cdd:PRK13642 4 ILEVENLVFKYekeSDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELlTAENVWNLRRKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 77 GVDFEFPSLYEKLTAIENLKYFG----SLYSKKLLS-IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILF 151
Cdd:PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGmenqGIPREEMIKrVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIII 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 152 LDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMS 218
Cdd:PRK13642 164 LDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
13-186 |
3.56e-14 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 69.19 E-value: 3.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 13 DRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKIL-----IGMITnygGSVIVNGvesKRHSNKFYENIGVDFEFPSLYE 87
Cdd:cd03232 19 KRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLagrktAGVIT---GEILING---RPLDKNFQRSTGYVEQQDVHSP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 88 KLTAIENLKYFG-----SLYSKKLLSIdellksvGLEneankrvseyskgmksrlnfikaLLHNPDILFLDEPTSGLDPS 162
Cdd:cd03232 93 NLTVREALRFSAllrglSVEQRKRLTI-------GVE-----------------------LAAKPSILFLDEPTSGLDSQ 142
|
170 180
....*....|....*....|....
gi 489525481 163 NSKVMKDIILSEKSKGKTIILTTH 186
Cdd:cd03232 143 AAYNIVRFLKKLADSGQAILCTIH 166
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
17-206 |
3.99e-14 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 72.20 E-value: 3.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE----SKRHSNKFYENIGVDFEFP--SLYEKLT 90
Cdd:PRK10261 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRidtlSPGKLQALRRDIQFIFQDPyaSLDPRQT 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 91 A----IENLKYFGSLYSKKLLS-IDELLKSVGLENE-ANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNS 164
Cdd:PRK10261 420 VgdsiMEPLRVHGLLPGKAAAArVAWLLERVGLLPEhAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIR 499
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 489525481 165 KVMKDIILS-EKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK10261 500 GQIINLLLDlQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-206 |
8.03e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 70.85 E-value: 8.03e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIG--- 77
Cdd:PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGiyl 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 78 VDFEfPSLYEKLTAIENLkYFGSLYSKKLLS-IDELLK----------SVGLENEANKRVSEYSKGmksrlnfikaLLHN 146
Cdd:PRK15439 91 VPQE-PLLFPNLSVKENI-LFGLPKRQASMQkMKQLLAalgcqldldsSAGSLEVADRQIVEILRG----------LMRD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 147 PDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTI 218
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
3-218 |
1.92e-13 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 68.66 E-value: 1.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 3 TVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENigvdfEF 82
Cdd:PRK10575 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR-----KV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 83 PSLYEKLTAIENL---------KY-----FGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPD 148
Cdd:PRK10575 88 AYLPQQLPAAEGMtvrelvaigRYpwhgaLGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSR 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489525481 149 ILFLDEPTSGLDPSNS-KVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLIMS 218
Cdd:PRK10575 168 CLLLDEPTSALDIAHQvDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRG 238
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
2-221 |
3.02e-13 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 69.59 E-value: 3.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRD--FLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENigvd 79
Cdd:TIGR00957 637 ITVHNATFTWARDLppTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQN---- 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 fefPSLYEKL---TAIENLKYFGSLYSKKLLSIDELLKSvGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPT 156
Cdd:TIGR00957 713 ---DSLRENIlfgKALNEKYYQQVLEACALLPDLEILPS-GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 788
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 157 SGLDPSNSKVMKDIILSEKS--KGKTIILTTHNMLDATELcDRVAFIVNGKISALDTPHNLIMSKGA 221
Cdd:TIGR00957 789 SAVDAHVGKHIFEHVIGPEGvlKNKTRILVTHGISYLPQV-DVIIVMSGGKISEMGSYQELLQRDGA 854
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-171 |
4.29e-13 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 67.45 E-value: 4.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNG------VESKRHsnkfye 74
Cdd:PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGklrigyVPQKLY------ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 nigVDFEFPslyekLTAIENLKYFGSLYSKKLLSIdelLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDE 154
Cdd:PRK09544 78 ---LDTTLP-----LTVNRFLRLRPGTKKEDILPA---LKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE 146
|
170
....*....|....*..
gi 489525481 155 PTSGLDPSNSKVMKDII 171
Cdd:PRK09544 147 PTQGVDVNGQVALYDLI 163
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1-188 |
5.36e-13 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 66.82 E-value: 5.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTD-RDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNK----FYEN 75
Cdd:PRK10908 1 MIRFEHVSKAYLGgRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRevpfLRRQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 76 IGVDFEFPSLYEKLTAIEN----LKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILF 151
Cdd:PRK10908 81 IGMIFQDHHLLMDRTVYDNvaipLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 489525481 152 LDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNM 188
Cdd:PRK10908 161 ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI 197
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
5-216 |
5.85e-13 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 67.32 E-value: 5.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 5 DDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNK-FYENIGVDFEFP 83
Cdd:PRK10253 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKeVARRIGLLAQNA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 84 SLYEKLTaIENLKYFGSLYSKKLLS---------IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDE 154
Cdd:PRK10253 91 TTPGDIT-VQELVARGRYPHQPLFTrwrkedeeaVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDE 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489525481 155 PTSGLDPSNSKVMKDiILSE--KSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLI 216
Cdd:PRK10253 170 PTTWLDISHQIDLLE-LLSElnREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
1-206 |
9.28e-13 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 66.63 E-value: 9.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTD---------RDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE----SKR 67
Cdd:PRK10419 3 LLNVSGLSHHYAHgglsgkhqhQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPlaklNRA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 68 HSNKFYENIGVDFEfpslyEKLTAI-----------ENLKYFGSL-YSKKLLSIDELLKSVGLENE-ANKRVSEYSKGMK 134
Cdd:PRK10419 83 QRKAFRRDIQMVFQ-----DSISAVnprktvreiirEPLRHLLSLdKAERLARASEMLRAVDLDDSvLDKRPPQLSGGQL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 135 SRLNFIKALLHNPDILFLDEPTSGLDpsnsKVMKDIILSEKSK-----GKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLD----LVLQAGVIRLLKKlqqqfGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
2-160 |
1.12e-12 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 67.65 E-value: 1.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNG------VESKRHS---NK- 71
Cdd:TIGR03719 323 IEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIGEtvklayVDQSRDAldpNKt 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 72 FYENI--GVD------FEFPSlyekltaienLKYFGSLYSKKllsidellksvgleNEANKRVSEYSKGMKSRLNFIKAL 143
Cdd:TIGR03719 403 VWEEIsgGLDiiklgkREIPS----------RAYVGRFNFKG--------------SDQQKKVGQLSGGERNRVHLAKTL 458
|
170
....*....|....*..
gi 489525481 144 LHNPDILFLDEPTSGLD 160
Cdd:TIGR03719 459 KSGGNVLLLDEPTNDLD 475
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
13-209 |
1.36e-12 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 67.50 E-value: 1.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 13 DRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNG------------------VESKRHSNKFYE 74
Cdd:PRK09700 275 DRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGkdisprspldavkkgmayITESRRDNGFFP 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 NIgvdfefpSLYEKLTAIENLKYFGSLYSKKLLSIDELLKSVGLENE--------ANKRVSEYSKGMKSRLNFIKALLHN 146
Cdd:PRK09700 355 NF-------SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQREllalkchsVNQNITELSGGNQQKVLISKWLCCC 427
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489525481 147 PDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISAL 209
Cdd:PRK09700 428 PEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
2-223 |
1.42e-12 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 66.03 E-value: 1.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTD--RDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMItNYGGSVIVNGVESKRHS-NKFYENIGV 78
Cdd:cd03289 3 MTVKDLTAKYTEggNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGDIQIDGVSWNSVPlQKWRKAFGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 ----DFEFPSLYEKltaieNLKYFGSLYSKKLLSI-DEL-LKSVgLENEANKR--VSEY-----SKGMKSRLNFIKALLH 145
Cdd:cd03289 82 ipqkVFIFSGTFRK-----NLDPYGKWSDEEIWKVaEEVgLKSV-IEQFPGQLdfVLVDggcvlSHGHKQLMCLARSVLS 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489525481 146 NPDILFLDEPTSGLDPSNSKVMKDiILSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISALDTPHNLIMSKGAIK 223
Cdd:cd03289 156 KAKILLLDEPSAHLDPITYQVIRK-TLKQAFADCTVILSEHR-IEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFK 231
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
17-210 |
1.51e-12 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 67.34 E-value: 1.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE----SKRHSNKfyENIGVDFEFPSLYEKLTAI 92
Cdd:PRK10762 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEvtfnGPKSSQE--AGIGIIHQELNLIPQLTIA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 93 ENL-------KYFGSLYSKKLLS-IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNS 164
Cdd:PRK10762 98 ENIflgrefvNRFGRIDWKKMYAeADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTET 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 489525481 165 KVMKDIILSEKSKGKTIILTTHNMLDATELCDRVA------FIVNGKISALD 210
Cdd:PRK10762 178 ESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTvfrdgqFIAEREVADLT 229
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
19-208 |
1.85e-12 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 66.95 E-value: 1.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 19 NINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNK-------FYenIGVDFEFPSLYEKLTA 91
Cdd:PRK10762 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQdglangiVY--ISEDRKRDGLVLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 92 IEN-----LKYFgslySKKLLSIDEllksvGLENEA---------------NKRVSEYSKGMKSRLNFIKALLHNPDILF 151
Cdd:PRK10762 348 KENmsltaLRYF----SRAGGSLKH-----ADEQQAvsdfirlfniktpsmEQAIGLLSGGNQQKVAIARGLMTRPKVLI 418
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 152 LDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISA 208
Cdd:PRK10762 419 LDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISG 475
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-206 |
2.08e-12 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 65.43 E-value: 2.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIG----MITNygGSVIVNGV-------ESKRHS 69
Cdd:CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGhpayKILE--GDILFKGEsildlepEERAHL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 70 NKF------YENIGVDFE-FPSL-------YEKLTAIENLKYFGSLYSKkllsidelLKSVGLENE-ANKRVSE-YSKGM 133
Cdd:CHL00131 85 GIFlafqypIEIPGVSNAdFLRLaynskrkFQGLPELDPLEFLEIINEK--------LKLVGMDPSfLSRNVNEgFSGGE 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489525481 134 KSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTH--NMLDATElCDRVAFIVNGKI 206
Cdd:CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHyqRLLDYIK-PDYVHVMQNGKI 230
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
1-206 |
2.50e-12 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 65.92 E-value: 2.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDF----LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMItNYGGSVIV-----NGVESKRHSNK 71
Cdd:PRK11022 3 LLNVDKLSVHFGDESApfraVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI-DYPGRVMAeklefNGQDLQRISEK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 72 FYENI-GVD----FEFP--SLYEKLTA----IENLKYF--GSLYSKKLLSIDeLLKSVGLENEANkRVSEY----SKGMK 134
Cdd:PRK11022 82 ERRNLvGAEvamiFQDPmtSLNPCYTVgfqiMEAIKVHqgGNKKTRRQRAID-LLNQVGIPDPAS-RLDVYphqlSGGMS 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489525481 135 SRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIILS-EKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK11022 160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLElQQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
2-186 |
2.91e-12 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 66.38 E-value: 2.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYT-DRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGV-------ESKRHS---- 69
Cdd:COG5265 358 VRFENVSFGYDpERPILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQdirdvtqASLRAAigiv 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 70 --------NKFYENIGvdfefpslYEKLTA----IENlkyfgslySKKLLSIDELLKSvgLENEANKRVSE----YSKGM 133
Cdd:COG5265 438 pqdtvlfnDTIAYNIA--------YGRPDAseeeVEA--------AARAAQIHDFIES--LPDGYDTRVGErglkLSGGE 499
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 489525481 134 KSRLNFIKALLHNPDILFLDEPTSGLDpsnSKVMKDII--LSEKSKGKTIILTTH 186
Cdd:COG5265 500 KQRVAIARTLLKNPPILIFDEATSALD---SRTERAIQaaLREVARGRTTLVIAH 551
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
2-212 |
3.07e-12 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 64.36 E-value: 3.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDR--DFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-SKRHSNKFYENIGV 78
Cdd:cd03369 7 IEVENLSVRYAPDlpPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDiSTIPLEDLRSSLTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFPSLYEKlTAIENLKYFGSlYSKkllsiDELLKSVgleneankRVSE----YSKGMKSRLNFIKALLHNPDILFLDE 154
Cdd:cd03369 87 IPQDPTLFSG-TIRSNLDPFDE-YSD-----EEIYGAL--------RVSEgglnLSQGQRQLLCLARALLKRPRVLVLDE 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 489525481 155 PTSGLDPSNSKVMKDIILSEKSkGKTIILTTHNmLDATELCDRVAFIVNGKISALDTP 212
Cdd:cd03369 152 ATASIDYATDALIQKTIREEFT-NSTILTIAHR-LRTIIDYDKILVMDAGEVKEYDHP 207
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
11-206 |
3.29e-12 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 64.72 E-value: 3.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 11 YTDRDFLQNINFEVGKGEILGFLGPSGAGKS----TLQKILIGMITNYGGSVIVNGVESK------RHSNKFYENIGVDF 80
Cdd:PRK10418 13 QAAQPLVHGVSLTLQRGRVLALVGGSGSGKSltcaAALGILPAGVRQTAGRVLLDGKPVApcalrgRKIATIMQNPRSAF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EfPSLYEKLTAIENLKYFGSLYSKKLLSidELLKSVGLENEAnkRVS-----EYSKGMKSRLNFIKALLHNPDILFLDEP 155
Cdd:PRK10418 93 N-PLHTMHTHARETCLALGKPADDATLT--AALEAVGLENAA--RVLklypfEMSGGMLQRMMIALALLCEAPFIIADEP 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 489525481 156 TSGLDPSNSKVMKDIILS-EKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK10418 168 TTDLDVVAQARILDLLESiVQKRALGMLLVTHDMGVVARLADDVAVMSHGRI 219
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
20-198 |
3.70e-12 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 65.50 E-value: 3.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 20 INFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVD----FEFP--SLYEKLTA-- 91
Cdd:PRK15079 40 VTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDiqmiFQDPlaSLNPRMTIge 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 92 --IENLKYFGSLYSKKLLS--IDELLKSVGL-ENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPS-NSK 165
Cdd:PRK15079 120 iiAEPLRTYHPKLSRQEVKdrVKAMMLKVGLlPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSiQAQ 199
|
170 180 190
....*....|....*....|....*....|...
gi 489525481 166 VMKDIILSEKSKGKTIILTTHNMLDATELCDRV 198
Cdd:PRK15079 200 VVNLLQQLQREMGLSLIFIAHDLAVVKHISDRV 232
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-208 |
3.78e-12 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 65.82 E-value: 3.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 4 VDDLSF-SYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHS-NKFYENiGVDF- 80
Cdd:COG3845 260 VENLSVrDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSpRERRRL-GVAYi 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 -E-------FPSlyekLTAIENL---KYFGSLYSKKLlsideLLKSVGLENEANKRVSEY-----SKGMKSRL----N-- 138
Cdd:COG3845 339 pEdrlgrglVPD----MSVAENLilgRYRRPPFSRGG-----FLDRKAIRAFAEELIEEFdvrtpGPDTPARSlsggNqq 409
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489525481 139 -FIKA--LLHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNmLD-ATELCDRVAFIVNGKISA 208
Cdd:COG3845 410 kVILAreLSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLLISED-LDeILALSDRIAVMYEGRIVG 482
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
2-213 |
4.59e-12 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 65.97 E-value: 4.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRD----F-LQNINFEVGKGEILgFL-GPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFY-E 74
Cdd:COG4615 328 LELRGVTYRYPGEDgdegFtLGPIDLTIRRGELV-FIvGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTADNREAYrQ 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 NIGV---DFE-FPSLYEKLTAIENLKyfgslyskkllsIDELLKSVGLEN---EANKRVS--EYSKGMKSRLNFIKALLH 145
Cdd:COG4615 407 LFSAvfsDFHlFDRLLGLDGEADPAR------------ARELLERLELDHkvsVEDGRFSttDLSQGQRKRLALLVALLE 474
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 146 NPDILFLDEPTSGLDPSNSKVMKDIILSE-KSKGKTIILTTHNmlDAT-ELCDRVAFIVNGKISALDTPH 213
Cdd:COG4615 475 DRPILVFDEWAADQDPEFRRVFYTELLPElKARGKTVIAISHD--DRYfDLADRVLKMDYGKLVELTGPA 542
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
2-160 |
5.85e-12 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 65.30 E-value: 5.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSV-----IVNGVESKRHSNKFYENI 76
Cdd:PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVkwsenANIGYYAQDHAYDFENDL 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 77 GVdFEFPSLYEKLTAIENL--KYFGSLyskkLLSIDELLKSVgleneankRVseYSKGMKSRLNFIKALLHNPDILFLDE 154
Cdd:PRK15064 400 TL-FDWMSQWRQEGDDEQAvrGTLGRL----LFSQDDIKKSV--------KV--LSGGEKGRMLFGKLMMQKPNVLVMDE 464
|
....*.
gi 489525481 155 PTSGLD 160
Cdd:PRK15064 465 PTNHMD 470
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
17-215 |
6.40e-12 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 64.09 E-value: 6.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITnYGGSVIVNGVE----------------SKRHSNKFyeNIGVdF 80
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGLLP-GQGEILLNGRPlsdwsaaelarhraylSQQQSPPF--AMPV-F 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EFPSLYekLTAIENLKYFGSLyskkllsIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLH-----NPD--ILFLD 153
Cdd:COG4138 88 QYLALH--QPAGASSEAVEQL-------LAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLLQvwptiNPEgqLLLLD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 154 EPTSGLDPSNsKVMKDIILSE-KSKGKTIILTTHNMLDATELCDRVAFIVNGKISALD------TPHNL 215
Cdd:COG4138 159 EPMNSLDVAQ-QAALDRLLRElCQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGetaevmTPENL 226
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
2-223 |
1.15e-11 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 64.65 E-value: 1.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRD--FLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKrhsnkfyenigvD 79
Cdd:PRK11176 342 IEFRNVTFTYPGKEvpALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLR------------D 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 FEFPSLYEKL------------TAIENLKY-FGSLYSKKllSIDELLKSV-------GLENEANKRVSE----YSKGMKS 135
Cdd:PRK11176 410 YTLASLRNQValvsqnvhlfndTIANNIAYaRTEQYSRE--QIEEAARMAyamdfinKMDNGLDTVIGEngvlLSGGQRQ 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 136 RLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDiILSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:PRK11176 488 RIAIARALLRDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHR-LSTIEKADEILVVEDGEIVERGTHAEL 565
|
....*...
gi 489525481 216 IMSKGAIK 223
Cdd:PRK11176 566 LAQNGVYA 573
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
17-209 |
1.49e-11 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 64.37 E-value: 1.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHS------NKF------------YENIgv 78
Cdd:PRK10982 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNaneainHGFalvteerrstgiYAYL-- 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFPSLYEKLTAIENlkYFGSLYSKKLLS-IDELLKSVGLENEANK-RVSEYSKGMKSRLNFIKALLHNPDILFLDEPT 156
Cdd:PRK10982 342 DIGFNSLISNIRNYKN--KVGLLDNSRMKSdTQWVIDSMRVKTPGHRtQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT 419
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 489525481 157 SGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISAL 209
Cdd:PRK10982 420 RGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
13-186 |
1.59e-11 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 64.36 E-value: 1.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 13 DRDFLQNINFEVGKGEILGFLGPSGAGKSTL-----QKILIGMITnyGGSVIVNGveSKRHSNkFYENIGV----DFEFP 83
Cdd:TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLlnvlaERVTTGVIT--GGDRLVNG--RPLDSS-FQRSIGYvqqqDLHLP 849
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 84 SLyeklTAIENLKYFGSLYSKKLLSI-------DELLKSVGLENEANKRVSEYSKGM----KSRLNFIKALLHNPD-ILF 151
Cdd:TIGR00956 850 TS----TVRESLRFSAYLRQPKSVSKsekmeyvEEVIKLLEMESYADAVVGVPGEGLnveqRKRLTIGVELVAKPKlLLF 925
|
170 180 190
....*....|....*....|....*....|....*
gi 489525481 152 LDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTH 186
Cdd:TIGR00956 926 LDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIH 960
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
17-205 |
1.81e-11 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 63.98 E-value: 1.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDFEFPSLYEKL--TAIEN 94
Cdd:PRK10982 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLqrSVMDN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 95 LkYFGSlYSKKLLSIDE---------LLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSK 165
Cdd:PRK10982 94 M-WLGR-YPTKGMFVDQdkmyrdtkaIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVN 171
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 489525481 166 VMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGK 205
Cdd:PRK10982 172 HLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
17-206 |
1.87e-11 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 63.96 E-value: 1.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMItNYGGSVIVNGVESKRHSNK----FYENIGVDFEFP--SLYEKLT 90
Cdd:PRK15134 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRqllpVRHRIQVVFQDPnsSLNPRLN 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 91 aIENLKYFGSLYSKKLLS-------IDELLKSVGLENEANKRV-SEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPS 162
Cdd:PRK15134 381 -VLQIIEEGLRVHQPTLSaaqreqqVIAVMEEVGLDPETRHRYpAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKT 459
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 489525481 163 nskVMKDIILSEKSKGKT----IILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK15134 460 ---VQAQILALLKSLQQKhqlaYLFISHDLHVVRALCHQVIVLRQGEV 504
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
2-252 |
4.10e-11 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 63.46 E-value: 4.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSY---TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNY-GGSVIVNGVE------SKRHSNK 71
Cdd:PLN03232 615 ISIKNGYFSWdskTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAeTSSVVIRGSVayvpqvSWIFNAT 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 72 FYENI--GVDFEfPSLYEKLTAIENLKYFGSLYSKKLLSidellksvglenEANKRVSEYSKGMKSRLNFIKALLHNPDI 149
Cdd:PLN03232 695 VRENIlfGSDFE-SERYWRAIDVTALQHDLDLLPGRDLT------------EIGERGVNISGGQKQRVSMARAVYSNSDI 761
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 150 LFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTThNMLDATELCDRVAFIVNGKISALDTPHNLIMSKGAIKvryTYF 229
Cdd:PLN03232 762 YIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVT-NQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFK---KLM 837
|
250 260
....*....|....*....|...
gi 489525481 230 DNGEKTSECFLNNTaNDKNLNML 252
Cdd:PLN03232 838 ENAGKMDATQEVNT-NDENILKL 859
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
1-187 |
7.84e-11 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 62.11 E-value: 7.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGV-- 78
Cdd:PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQpa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 -------DFEFPSLYEKLtAIENLKYFG---SLYSKKLLSID---------ELLKSVGLENEANKR-VSEYSKGMKSRLN 138
Cdd:PRK10636 81 leyvidgDREYRQLEAQL-HDANERNDGhaiATIHGKLDAIDawtirsraaSLLHGLGFSNEQLERpVSDFSGGWRMRLN 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 489525481 139 FIKALLHNPDILFLDEPTSGLDpsnskvMKDIILSE---KSKGKTIILTTHN 187
Cdd:PRK10636 160 LAQALICRSDLLLLDEPTNHLD------LDAVIWLEkwlKSYQGTLILISHD 205
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
1-186 |
8.16e-11 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 62.13 E-value: 8.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLS-FSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGmITNYG-GSVivngveskrhsnkfyenigv 78
Cdd:COG4178 362 ALALEDLTlRTPDGRPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAG-LWPYGsGRI-------------------- 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 dfEFPSLYEKLtaienlkyF---------GSL-----YSKKLLSID-----ELLKSVGLENEANkRVSEY-------SKG 132
Cdd:COG4178 421 --ARPAGARVL--------FlpqrpylplGTLreallYPATAEAFSdaelrEALEAVGLGHLAE-RLDEEadwdqvlSLG 489
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 489525481 133 MKSRLNFIKALLHNPDILFLDEPTSGLDPSN-SKVMKdiILSEKSKGKTIILTTH 186
Cdd:COG4178 490 EQQRLAFARLLLHKPDWLFLDEATSALDEENeAALYQ--LLREELPGTTVISVGH 542
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
17-206 |
1.08e-10 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 61.62 E-value: 1.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITnYGGSVIVNGVE----SKRHSNKFYENIGVDFE--FPSLYEKLT 90
Cdd:COG4172 302 VDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIP-SEGEIRFDGQDldglSRRALRPLRRRMQVVFQdpFGSLSPRMT 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 91 --AI--ENLKYFGSLYSKK--LLSIDELLKSVGLENEANKR-VSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSn 163
Cdd:COG4172 381 vgQIiaEGLRVHGPGLSAAerRARVAEALEEVGLDPAARHRyPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVS- 459
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 489525481 164 skVMKDII--LSE--KSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:COG4172 460 --VQAQILdlLRDlqREHGLAYLFISHDLAVVRALAHRVMVMKDGKV 504
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
1-160 |
1.12e-10 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 61.89 E-value: 1.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMIT------NYGGSVIVNGVESK--RHSNkf 72
Cdd:PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLlddgriIYEQDLIVARLQQDppRNVE-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 73 yeniGVDFEFPSlyEKLTAI-ENLKYFGSL-------YSKKLLS--------------------IDELLKSVGLEneANK 124
Cdd:PRK11147 81 ----GTVYDFVA--EGIEEQaEYLKRYHDIshlvetdPSEKNLNelaklqeqldhhnlwqlenrINEVLAQLGLD--PDA 152
|
170 180 190
....*....|....*....|....*....|....*.
gi 489525481 125 RVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLD 160
Cdd:PRK11147 153 ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-213 |
3.31e-10 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 59.17 E-value: 3.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNG-----------VESKR-- 67
Cdd:PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMrdgqlrdlyalSEAERrr 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 68 ---------HSNKFY---------ENIGvdfefpslyEKLTAIENlKYFGSLYSKKLlsidELLKSVglENEANK---RV 126
Cdd:PRK11701 86 llrtewgfvHQHPRDglrmqvsagGNIG---------ERLMAVGA-RHYGDIRATAG----DWLERV--EIDAARiddLP 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 127 SEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSK-GKTIILTTHNMLDATELCDRVAFIVNGK 205
Cdd:PRK11701 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRElGLAVVIVTHDLAVARLLAHRLLVMKQGR 229
|
250
....*....|....*
gi 489525481 206 I-------SALDTPH 213
Cdd:PRK11701 230 VvesgltdQVLDDPQ 244
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
10-206 |
3.64e-10 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 60.03 E-value: 3.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 10 SYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLqkilIGMIT-----NYGGSVIVNGV---------ESKRHsnkfyen 75
Cdd:PRK10938 269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTL----LSLITgdhpqGYSNDLTLFGRrrgsgetiwDIKKH------- 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 76 IG-VDFEFPSLYEKLTAIENL---KYFGS--LY----SKKLLSIDELLKSVGLENE-ANKRVSEYSKGmKSRLNFI-KAL 143
Cdd:PRK10938 338 IGyVSSSLHLDYRVSTSVRNVilsGFFDSigIYqavsDRQQKLAQQWLDILGIDKRtADAPFHSLSWG-QQRLALIvRAL 416
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489525481 144 LHNPDILFLDEPTSGLDPSNSKVMK---DIILSEkskGKTIIL-TTHNMLDATE-LCDRVAFIVNGKI 206
Cdd:PRK10938 417 VKHPTLLILDEPLQGLDPLNRQLVRrfvDVLISE---GETQLLfVSHHAEDAPAcITHRLEFVPDGDI 481
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
2-207 |
4.74e-10 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 59.68 E-value: 4.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLS---FSytdrdflqNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGV 78
Cdd:PRK15439 269 LTVEDLTgegFR--------NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 -----DFEFPSLYekLTAIENLKYFGSLYSKKLLSIDELLKSVGLE----------NEANKRVSEYSKGMKSRLNFIKAL 143
Cdd:PRK15439 341 vylpeDRQSSGLY--LDAPLAWNVCALTHNRRGFWIKPARENAVLEryrralnikfNHAEQAARTLSGGNQQKVLIAKCL 418
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489525481 144 LHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKIS 207
Cdd:PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEIS 482
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
2-160 |
7.66e-10 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 59.35 E-value: 7.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSY-TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNG--VESKRHS--------- 69
Cdd:PRK10790 341 IDIDNVSFAYrDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGrpLSSLSHSvlrqgvamv 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 70 --------NKFYENI--GVDFEFPSLYEKLTAIEnlkyfgslyskkllsIDELLKSV--GLENEANKRVSEYSKGMKSRL 137
Cdd:PRK10790 421 qqdpvvlaDTFLANVtlGRDISEEQVWQALETVQ---------------LAELARSLpdGLYTPLGEQGNNLSVGQKQLL 485
|
170 180
....*....|....*....|...
gi 489525481 138 NFIKALLHNPDILFLDEPTSGLD 160
Cdd:PRK10790 486 ALARVLVQTPQILILDEATANID 508
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
17-206 |
7.73e-10 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 57.27 E-value: 7.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYG---GSVIVNGVESKRHSNKF-----YENIGvDFEFPSlyek 88
Cdd:cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVsveGDIHYNGIPYKEFAEKYpgeiiYVSEE-DVHFPT---- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 89 LTAIENLKYFGSLyskkllsidellksvglenEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNS---- 164
Cdd:cd03233 98 LTVRETLDFALRC-------------------KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTAleil 158
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 489525481 165 KVMKdiILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:cd03233 159 KCIR--TMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQ 198
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
23-190 |
1.07e-09 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 58.67 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 23 EVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVivngVESKRHSNK-FYenIGVDFEFPsLYEKLTAIEnlKYFGSL 101
Cdd:PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV----DPELKISYKpQY--IKPDYDGT-VEDLLRSIT--DDLGSS 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 102 YSKkllsiDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSN----SKVMKDIIlseKSK 177
Cdd:PRK13409 432 YYK-----SEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQrlavAKAIRRIA---EER 503
|
170
....*....|....*
gi 489525481 178 GKTIILTTHN--MLD 190
Cdd:PRK13409 504 EATALVVDHDiyMID 518
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
2-188 |
1.28e-09 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 56.96 E-value: 1.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYT-DRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNgveSKRHSNKFYENIGVDF 80
Cdd:cd03290 1 VQVTNGYFSWGsGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWS---NKNESEPSFEATRSRN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 EFPSLYE-------KLTAIENLKyFGSLYSKKL---------LSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALL 144
Cdd:cd03290 78 RYSVAYAaqkpwllNATVEENIT-FGSPFNKQRykavtdacsLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 489525481 145 HNPDILFLDEPTSGLDPSNSK-VMKDIILS-EKSKGKTIILTTHNM 188
Cdd:cd03290 157 QNTNIVFLDDPFSALDIHLSDhLMQEGILKfLQDDKRTLVLVTHKL 202
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
27-186 |
1.67e-09 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 58.32 E-value: 1.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 27 GEILGFLGPSGAGKSTLQKILIGMITN--YGGSVIVNGVESK-----RHSNKFYENigvDFEFPslyeKLTAIENLKYFG 99
Cdd:PLN03140 906 GVLTALMGVSGAGKTTLMDVLAGRKTGgyIEGDIRISGFPKKqetfaRISGYCEQN---DIHSP----QVTVRESLIYSA 978
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 100 SL-----YSK--KLLSIDELLKSVGLENEANKRV-----SEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVM 167
Cdd:PLN03140 979 FLrlpkeVSKeeKMMFVDEVMELVELDNLKDAIVglpgvTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1058
|
170
....*....|....*....
gi 489525481 168 KDIILSEKSKGKTIILTTH 186
Cdd:PLN03140 1059 MRTVRNTVDTGRTVVCTIH 1077
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
13-160 |
1.75e-09 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 58.02 E-value: 1.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 13 DRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVivngveskrhsnKFYENIGVDF--EFPSLYEKLT 90
Cdd:TIGR03719 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEA------------RPQPGIKVGYlpQEPQLDPTKT 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 91 AIEN-----------LKYFGSLYSK---------KLLS----IDELLKSVGLENEANK---------------RVSEYSK 131
Cdd:TIGR03719 85 VRENveegvaeikdaLDRFNEISAKyaepdadfdKLAAeqaeLQEIIDAADAWDLDSQleiamdalrcppwdaDVTKLSG 164
|
170 180
....*....|....*....|....*....
gi 489525481 132 GMKSRLNFIKALLHNPDILFLDEPTSGLD 160
Cdd:TIGR03719 165 GERRRVALCRLLLSKPDMLLLDEPTNHLD 193
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
2-206 |
2.35e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 57.83 E-value: 2.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSY---TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIG-MITNYGGSVIVNGVE------SKRHSNK 71
Cdd:PLN03130 615 ISIKNGYFSWdskAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGeLPPRSDASVVIRGTVayvpqvSWIFNAT 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 72 FYENI--GVDFEfPSLYEKLTAIENLKYfgslyskkllsiDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDI 149
Cdd:PLN03130 695 VRDNIlfGSPFD-PERYERAIDVTALQH------------DLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV 761
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 150 LFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTThNMLDATELCDRVAFIVNGKI 206
Cdd:PLN03130 762 YIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVT-NQLHFLSQVDRIILVHEGMI 817
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
2-160 |
2.38e-09 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 57.44 E-value: 2.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVnG-------VESKRHS---NK 71
Cdd:PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GetvklayVDQSRDAldpNK 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 72 -FYENI--GVD------FEFPSlyeklTAienlkYFGSLYSKKllsidellksvgleNEANKRVSEYSKGMKSRLNFIKA 142
Cdd:PRK11819 404 tVWEEIsgGLDiikvgnREIPS-----RA-----YVGRFNFKG--------------GDQQKKVGVLSGGERNRLHLAKT 459
|
170
....*....|....*...
gi 489525481 143 LLHNPDILFLDEPTSGLD 160
Cdd:PRK11819 460 LKQGGNVLLLDEPTNDLD 477
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
17-221 |
3.89e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 57.29 E-value: 3.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-SKRHSNKFYENIGVDFEFPSLYEKlTAIENL 95
Cdd:PLN03232 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDvAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNI 1330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 96 KYFGSLYSKKLLSIDEL--LKSV------GLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVM 167
Cdd:PLN03232 1331 DPFSEHNDADLWEALERahIKDVidrnpfGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI 1410
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 489525481 168 KDIIlSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISALDTPHNLIMSKGA 221
Cdd:PLN03232 1411 QRTI-REEFKSCTMLVIAHR-LNTIIDCDKILVLSSGQVLEYDSPQELLSRDTS 1462
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
2-216 |
4.07e-09 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 57.23 E-value: 4.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTD--RDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMItNYGGSVIVNGVESKRHS-NKFYENIGV 78
Cdd:TIGR01271 1218 MDVQGLTAKYTEagRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL-STEGEIQIDGVSWNSVTlQTWRKAFGV 1296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 D----FEFPSLYEKltaieNLKYFGSLYSKKLLSI-DEL-LKSVgLENEANKR--VSE-----YSKGMKSRLNFIKALLH 145
Cdd:TIGR01271 1297 IpqkvFIFSGTFRK-----NLDPYEQWSDEEIWKVaEEVgLKSV-IEQFPDKLdfVLVdggyvLSNGHKQLMCLARSILS 1370
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489525481 146 NPDILFLDEPTSGLDPSNSKVMKDiILSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISALDTPHNLI 216
Cdd:TIGR01271 1371 KAKILLLDEPSAHLDPVTLQIIRK-TLKQSFSNCTVILSEHR-VEALLECQQFLVIEGSSVKQYDSIQKLL 1439
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1-205 |
4.45e-09 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 56.79 E-value: 4.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDR----DFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYE-- 74
Cdd:PRK10261 12 VLAVENLNIAFMQEqqkiAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEls 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 -------------NIGVDFEFP--SLYEKLTAIENLK-----YFGSLYSKKLLSIDELLKSVGLEnEANKRVSEY----S 130
Cdd:PRK10261 92 eqsaaqmrhvrgaDMAMIFQEPmtSLNPVFTVGEQIAesirlHQGASREEAMVEAKRMLDQVRIP-EAQTILSRYphqlS 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489525481 131 KGMKSRLNFIKALLHNPDILFLDEPTSGLDPS-NSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGK 205
Cdd:PRK10261 171 GGMRQRVMIAMALSCRPAVLIADEPTTALDVTiQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
23-198 |
4.72e-09 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 56.72 E-value: 4.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 23 EVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIvngvESKRHSNK-FYenIGVDFEfpslyekLTAIENLK----- 96
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVD----EDLKISYKpQY--ISPDYD-------GTVEEFLRsantd 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 97 YFGSLYSKkllsiDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSN----SKVMKDIIl 172
Cdd:COG1245 429 DFGSSYYK-----TEIIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQrlavAKAIRRFA- 502
|
170 180
....*....|....*....|....*...
gi 489525481 173 seKSKGKTIILTTHN--MLDAteLCDRV 198
Cdd:COG1245 503 --ENRGKTAMVVDHDiyLIDY--ISDRL 526
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
13-220 |
5.28e-09 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 56.88 E-value: 5.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 13 DRDF-LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKR---HSNKFyeNIGVDFEFPSLYEK 88
Cdd:TIGR00957 1297 DLDLvLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKiglHDLRF--KITIIPQDPVLFSG 1374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 89 lTAIENLKYFGSLYSKKLLSIDEL--LKSV------GLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLD 160
Cdd:TIGR00957 1375 -SLRMNLDPFSQYSDEEVWWALELahLKTFvsalpdKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD 1453
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 161 PSNSKVMKDIILS--EKSKGKTIILTTHNMLDATelcdRVAFIVNGKISALDTPHNLIMSKG 220
Cdd:TIGR00957 1454 LETDNLIQSTIRTqfEDCTVLTIAHRLNTIMDYT----RVIVLDKGEVAEFGAPSNLLQQRG 1511
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
26-208 |
7.31e-09 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 56.36 E-value: 7.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 26 KGEILGFLGPSGAGKSTLQKILIG-MITNYGgsvivngveskrhsnkfyenigvDFEFPSLYEKL------TAIENlkYF 98
Cdd:PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGeLIPNLG-----------------------DYEEEPSWDEVlkrfrgTELQN--YF 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 99 GSLYSKK-----------------------LLS-------IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPD 148
Cdd:PRK13409 153 KKLYNGEikvvhkpqyvdlipkvfkgkvreLLKkvdergkLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDAD 232
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 149 ILFLDEPTSGLDPSNSKVMKDIIlSEKSKGKTIILTTHNM--LDAteLCDRVAfIVNGKISA 208
Cdd:PRK13409 233 FYFFDEPTSYLDIRQRLNVARLI-RELAEGKYVLVVEHDLavLDY--LADNVH-IAYGEPGA 290
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
2-193 |
8.49e-09 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 55.87 E-value: 8.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSY--TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILI-------GMITNYGGSVIVNGVESKRhsnkf 72
Cdd:PRK10789 314 LDVNIRQFTYpqTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQrhfdvseGDIRFHDIPLTKLQLDSWR----- 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 73 yENIGVDFEFPSLYEKLTA--------------IENLKYFGSLYskkllsiDELLK-SVGLENEANKRVSEYSKGMKSRL 137
Cdd:PRK10789 389 -SRLAVVSQTPFLFSDTVAnnialgrpdatqqeIEHVARLASVH-------DDILRlPQGYDTEVGERGVMLSGGQKQRI 460
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489525481 138 NFIKALLHNPDILFLDEPTSGLD-PSNSKVMKDiiLSEKSKGKTIILTTHNMLDATE 193
Cdd:PRK10789 461 SIARALLLNAEILILDDALSAVDgRTEHQILHN--LRQWGEGRTVIISAHRLSALTE 515
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
34-210 |
8.71e-09 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 55.65 E-value: 8.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 34 GPSGAGKSTLQKILIGMITNYGGSVIVNG-----VES-------KRHsnkfyenIGVDFEFPSLYEKLTAIENLKY---- 97
Cdd:PRK11144 31 GRSGAGKTSLINAISGLTRPQKGRIVLNGrvlfdAEKgiclppeKRR-------IGYVFQDARLFPHYKVRGNLRYgmak 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 98 -----FGSLYSkkLLSIDELLKsvgleneankRV-SEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLD-PSNSKVMKdi 170
Cdd:PRK11144 104 smvaqFDKIVA--LLGIEPLLD----------RYpGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDlPRKRELLP-- 169
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 489525481 171 ILSEKSKG-KTIIL-TTHNMLDATELCDRVAFIVNGKISALD 210
Cdd:PRK11144 170 YLERLAREiNIPILyVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
26-190 |
8.77e-09 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 55.95 E-value: 8.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 26 KGEILGFLGPSGAGKSTLQKILIG-MITNYGgsvIVNGVESKRHSNKFYENIGVDFEFPSLYE-------KLTAIENL-K 96
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALKILSGeLKPNLG---DYDEEPSWDEVLKRFRGTELQDYFKKLANgeikvahKPQYVDLIpK 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 97 YF-GSLysKKLLS-------IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMK 168
Cdd:COG1245 175 VFkGTV--RELLEkvdergkLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLDIYQRLNVA 252
|
170 180
....*....|....*....|....
gi 489525481 169 DIILSEKSKGKTIILTTHN--MLD 190
Cdd:COG1245 253 RLIRELAEEGKYVLVVEHDlaILD 276
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
26-200 |
1.07e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 53.15 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 26 KGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDFEFPSLYEKLTAIENLkyfgslyskk 105
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLA---------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 106 llsidellksvgleneankrvseyskgmksrlnFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIILS------EKSKGK 179
Cdd:smart00382 71 ---------------------------------LALARKLKPDVLILDEITSLLDAEQEALLLLLEELrlllllKSEKNL 117
|
170 180
....*....|....*....|.
gi 489525481 180 TIILTTHNMLDATELCDRVAF 200
Cdd:smart00382 118 TVILTTNDEKDLGPALLRRRF 138
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
1-186 |
1.24e-08 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 54.41 E-value: 1.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMiTNY---GGSVIVNG--------------- 62
Cdd:PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR-EDYevtGGTVEFKGkdllelspedrageg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 63 --------VESKRHSNKFYENIGVD-------------FEFPSLYEKltAIENLKyfgslyskklLSIDELLKSVGLene 121
Cdd:PRK09580 80 ifmafqypVEIPGVSNQFFLQTALNavrsyrgqepldrFDFQDLMEE--KIALLK----------MPEDLLTRSVNV--- 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489525481 122 ankrvsEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTH 186
Cdd:PRK09580 145 ------GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
17-221 |
1.26e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 55.90 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-SKRHSNKFYENIGVDFEFPSLYEKlTAIENL 95
Cdd:PLN03130 1255 LHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDiSKFGLMDLRKVLGIIPQAPVLFSG-TVRFNL 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 96 KYFGSLYSKKLLSIDEL--LKSV------GLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVM 167
Cdd:PLN03130 1334 DPFNEHNDADLWESLERahLKDVirrnslGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI 1413
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 489525481 168 KDIIlSEKSKGKTIILTTHNmLDATELCDRVAFIVNGKISALDTPHNLIMSKGA 221
Cdd:PLN03130 1414 QKTI-REEFKSCTMLIIAHR-LNTIIDCDRILVLDAGRVVEFDTPENLLSNEGS 1465
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
17-206 |
1.52e-08 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 54.41 E-value: 1.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNG---------VESKRHSNKFY---------ENIGV 78
Cdd:PRK15112 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDhplhfgdysYRSQRIRMIFQdpstslnprQRISQ 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFP-SLYEKLTAIENLKyfgslyskkllSIDELLKSVGLENE-ANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPT 156
Cdd:PRK15112 109 ILDFPlRLNTDLEPEQREK-----------QIIETLRQVGLLPDhASYYPHMLAPGQKQRLGLARALILRPKVIIADEAL 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 489525481 157 SGLDPSNSKVMKDIILSEKSK-GKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:PRK15112 178 ASLDMSMRSQLINLMLELQEKqGISYIYVTQHLGMMKHISDQVLVMHQGEV 228
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
27-188 |
1.93e-08 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 53.91 E-value: 1.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 27 GEILGFLGPSGAGKSTLQKILIG-MITNYGgsvivngvesKRHSNKFYENIGVDFEFPSLYEKLTAIENLKY-------- 97
Cdd:cd03236 26 GQVLGLVGPNGIGKSTALKILAGkLKPNLG----------KFDDPPDWDEILDEFRGSELQNYFTKLLEGDVkvivkpqy 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 98 -----------FGSLYSKK--LLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNS 164
Cdd:cd03236 96 vdlipkavkgkVGELLKKKdeRGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQR 175
|
170 180
....*....|....*....|....
gi 489525481 165 KVMKDIILSEKSKGKTIILTTHNM 188
Cdd:cd03236 176 LNAARLIRELAEDDNYVLVVEHDL 199
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
1-160 |
2.14e-08 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 54.87 E-value: 2.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFL-QNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVN-----GVESKRHSNkfye 74
Cdd:PLN03073 508 IISFSDASFGYPGGPLLfKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSakvrmAVFSQHHVD---- 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 75 niGVDFEF-PSLYEkltaienLKYFGSLYSKKLLSideLLKSVGLE-NEANKRVSEYSKGMKSRLNFIKALLHNPDILFL 152
Cdd:PLN03073 584 --GLDLSSnPLLYM-------MRCFPGVPEQKLRA---HLGSFGVTgNLALQPMYTLSGGQKSRVAFAKITFKKPHILLL 651
|
....*...
gi 489525481 153 DEPTSGLD 160
Cdd:PLN03073 652 DEPSNHLD 659
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-206 |
2.45e-08 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 54.69 E-value: 2.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQ----NINFEVGKGEILGFLGPSGAGKS----TLQKILIGMITNYGGSVIVNGVE----SKRH 68
Cdd:COG4172 6 LLSVEDLSVAFGQGGGTVeavkGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDllglSERE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 69 SNKFYEN-IGVDFEfpslyEKLTA-----------IENLKYFGSLYSKKLLS-IDELLKSVGLEnEANKRVSEY----SK 131
Cdd:COG4172 86 LRRIRGNrIAMIFQ-----EPMTSlnplhtigkqiAEVLRLHRGLSGAAARArALELLERVGIP-DPERRLDAYphqlSG 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 132 GMKSRLNFIKALLHNPDILFLDEPTSGLDPSnskVMKDII--LSE--KSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:COG4172 160 GQRQRVMIAMALANEPDLLIADEPTTALDVT---VQAQILdlLKDlqRELGMALLLITHDLGVVRRFADRVAVMRQGEI 235
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
105-188 |
3.29e-08 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 54.65 E-value: 3.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 105 KLLSIDELLKSvgLENEANKRVSEYSK----GMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKG-K 179
Cdd:PTZ00265 1333 KFAAIDEFIES--LPNKYDTNVGPYGKslsgGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAdK 1410
|
....*....
gi 489525481 180 TIILTTHNM 188
Cdd:PTZ00265 1411 TIITIAHRI 1419
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
20-208 |
5.51e-08 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 52.63 E-value: 5.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 20 INFEVGKGEILGFLGPSGAGKSTLQKILIGMITnYGGSVIVNG--------VESKRHSNKFYENIGVDFEFPsLYEKLTA 91
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGqpleawsaAELARHRAYLSQQQTPPFAMP-VFQYLTL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 92 ienlkyfgSLYSKKLLS-----IDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLH-----NPD--ILFLDEPTSGL 159
Cdd:PRK03695 93 --------HQPDKTRTEavasaLNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQvwpdiNPAgqLLLLDEPMNSL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 489525481 160 DPSNSKVMkDIILSE-KSKGKTIILTTHNMLDATELCDRVAFIVNGKISA 208
Cdd:PRK03695 165 DVAQQAAL-DRLLSElCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLA 213
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
17-222 |
6.15e-08 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 53.63 E-value: 6.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE----SKRHSNKFYENIGVDfefPSLYEKlTAI 92
Cdd:PTZ00243 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREigayGLRELRRQFSMIPQD---PVLFDG-TVR 1401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 93 ENLKYFGSLYSKKLLSIDELlksVGL------ENEA-NKRV----SEYSKGMKSRLNFIKALL-HNPDILFLDEPTSGLD 160
Cdd:PTZ00243 1402 QNVDPFLEASSAEVWAALEL---VGLrervasESEGiDSRVleggSNYSVGQRQLMCMARALLkKGSGFILMDEATANID 1478
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 161 PSNSKVMKDIILSEKSkGKTIILTTHNmLDATELCDRVAFIVNGKISALDTPHNLIMSKGAI 222
Cdd:PTZ00243 1479 PALDRQIQATVMSAFS-AYTVITIAHR-LHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSI 1538
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
12-215 |
7.13e-08 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 52.90 E-value: 7.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 12 TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITN-YGGSVIVNG--------------------VESKRHSN 70
Cdd:TIGR02633 271 PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGkFEGNVFINGkpvdirnpaqairagiamvpEDRKRHGI 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 71 KFYENIGVDFEFPSL--YEKLTAIENlkyfgslySKKLLSIDELLKSVGLENEA-NKRVSEYSKGMKSRLNFIKALLHNP 147
Cdd:TIGR02633 351 VPILGVGKNITLSVLksFCFKMRIDA--------AAELQIIGSAIQRLKVKTASpFLPIGRLSGGNQQKAVLAKMLLTNP 422
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489525481 148 DILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNL 215
Cdd:TIGR02633 423 RVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
17-162 |
1.35e-07 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 51.89 E-value: 1.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIgMI-TNYGGSVIVNGVESKRHS----NKFYENIGVDFEFP--SL--YE 87
Cdd:PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLT-MIeTPTGGELYYQGQDLLKADpeaqKLLRQKIQIVFQNPygSLnpRK 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 88 KLTAI--ENLKYFGSLYSK-KLLSIDELLKSVGLENEANKRVSE-YSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPS 162
Cdd:PRK11308 110 KVGQIleEPLLINTSLSAAeRREKALAMMAKVGLRPEHYDRYPHmFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS 188
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-205 |
2.53e-07 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 51.24 E-value: 2.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSY----TDRDFLQNINFEVGKGEILGFLGPSGAGKS-TLQKIL-----------IGMITNYGGSVIVNGVE 64
Cdd:PRK15134 5 LLAIENLSVAFrqqqTVRTVVNDVSLQIEAGETLALVGESGSGKSvTALSILrllpsppvvypSGDIRFHGESLLHASEQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 65 SKRH--SNKfyenIGVDFEFP--SLyEKLTAIENlkyfgSLYskKLLS-------------IDELLKSVGLENeANKRVS 127
Cdd:PRK15134 85 TLRGvrGNK----IAMIFQEPmvSL-NPLHTLEK-----QLY--EVLSlhrgmrreaargeILNCLDRVGIRQ-AAKRLT 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 128 EY----SKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSnskVMKDI--ILSE--KSKGKTIILTTHNMLDATELCDRVA 199
Cdd:PRK15134 152 DYphqlSGGERQRVMIAMALLTRPELLIADEPTTALDVS---VQAQIlqLLRElqQELNMGLLFITHNLSIVRKLADRVA 228
|
....*.
gi 489525481 200 FIVNGK 205
Cdd:PRK15134 229 VMQNGR 234
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
17-212 |
3.89e-07 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 50.61 E-value: 3.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSV-----IVNGVESK-RhsnkfyeNIGVDFEFPSLYEKLT 90
Cdd:PRK11650 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIwiggrVVNELEPAdR-------DIAMVFQNYALYPHMS 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 91 AIENLKYfgSL----YSK-----------KLLSIDELLKsvgleneanKRVSEYSKGMKSRLNFIKALLHNPDILFLDEP 155
Cdd:PRK11650 93 VRENMAY--GLkirgMPKaeieervaeaaRILELEPLLD---------RKPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 489525481 156 TSGLDPSNSKVMK-DIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTP 212
Cdd:PRK11650 162 LSNLDAKLRVQMRlEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTP 219
|
|
| PRK15177 |
PRK15177 |
Vi polysaccharide ABC transporter ATP-binding protein VexC; |
17-207 |
5.55e-07 |
|
Vi polysaccharide ABC transporter ATP-binding protein VexC;
Pssm-ID: 185099 [Multi-domain] Cd Length: 213 Bit Score: 49.29 E-value: 5.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVI-VNGVESKRHSNKFyenigvdfefpsLYEKLTAIENL 95
Cdd:PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIgLRGDALPLGANSF------------ILPGLTGEENA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 96 KYFGSLYSkklLSIDEL----LKSVGLENEANKRVSEYSKGMKSRLNFIKALLHnPDILFLDEPTSGLDPSNSKVMKDII 171
Cdd:PRK15177 71 RMMASLYG---LDGDEFshfcYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLL-PCRLYIADGKLYTGDNATQLRMQAA 146
|
170 180 190
....*....|....*....|....*....|....*.
gi 489525481 172 LSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKIS 207
Cdd:PRK15177 147 LACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKIT 182
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
2-222 |
7.05e-07 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 49.14 E-value: 7.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTD--RDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE-SKRHSNKFYENIGV 78
Cdd:cd03288 20 IKIHDLCVRYENnlKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDiSKLPLHTLRSRLSI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 79 DFEFPSLYEKLTAIeNLKYFGSLYSKKL---LSIDEL---LKSV--GLENEANKRVSEYSKGMKSRLNFIKALLHNPDIL 150
Cdd:cd03288 100 ILQDPILFSGSIRF-NLDPECKCTDDRLweaLEIAQLknmVKSLpgGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSIL 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489525481 151 FLDEPTSGLDPSNSKVMKDIILSEKSKGK--TIILTTHNMLDAtelcDRVAFIVNGKISALDTPHNLIMSKGAI 222
Cdd:cd03288 179 IMDEATASIDMATENILQKVVMTAFADRTvvTIAHRVSTILDA----DLVLVLSRGILVECDTPENLLAQEDGV 248
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
1-186 |
8.92e-07 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 49.89 E-value: 8.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVE--SKRHSNKF-YENIG 77
Cdd:PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNErlGKLRQDQFaFEEFT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 78 V-------DFEFPSLYEKLTAIenlkyfgslYSKKLLSID-------------------------ELLKSVGLENEA-NK 124
Cdd:PRK15064 81 VldtvimgHTELWEVKQERDRI---------YALPEMSEEdgmkvadlevkfaemdgytaearagELLLGVGIPEEQhYG 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 125 RVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSkgkTIILTTH 186
Cdd:PRK15064 152 LMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNS---TMIIISH 210
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
17-186 |
9.75e-07 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 49.78 E-value: 9.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSV--------------IVNGveskrhsnkfyenigvdfef 82
Cdd:PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVwaersiayvpqqawIMNA-------------------- 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 83 pslyeklTAIENLKYFGSLYSKKL--------LSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDE 154
Cdd:PTZ00243 736 -------TVRGNILFFDEEDAARLadavrvsqLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDD 808
|
170 180 190
....*....|....*....|....*....|...
gi 489525481 155 PTSGLDPS-NSKVMKDIILSeKSKGKTIILTTH 186
Cdd:PTZ00243 809 PLSALDAHvGERVVEECFLG-ALAGKTRVLATH 840
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
17-188 |
1.59e-06 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 49.14 E-value: 1.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVivngveskRHSNKFYENIGVDFEFPSlyeklTAIENLk 96
Cdd:TIGR01271 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI--------KHSGRISFSPQTSWIMPG-----TIKDNI- 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 97 YFGSLYSK----KLLSIDELLKSVGLENEANKRV-----SEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNSKVM 167
Cdd:TIGR01271 508 IFGLSYDEyrytSVIKACQLEEDIALFPEKDKTVlgeggITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI 587
|
170 180
....*....|....*....|.
gi 489525481 168 KDIILSEKSKGKTIILTTHNM 188
Cdd:TIGR01271 588 FESCLCKLMSNKTRILVTSKL 608
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
1-160 |
2.54e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 48.63 E-value: 2.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSV-IVNGVESKRHSNKFYENIGVD 79
Cdd:PRK10636 312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIgLAKGIKLGYFAQHQLEFLRAD 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 80 fEFPslyekltaienLKYFGSLYSKKL-LSIDELLKSVGLENEankRVSE----YSKGMKSRLNFIKALLHNPDILFLDE 154
Cdd:PRK10636 392 -ESP-----------LQHLARLAPQELeQKLRDYLGGFGFQGD---KVTEetrrFSGGEKARLVLALIVWQRPNLLLLDE 456
|
....*.
gi 489525481 155 PTSGLD 160
Cdd:PRK10636 457 PTNHLD 462
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
1-186 |
2.83e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 46.79 E-value: 2.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDfLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSNKFYENIGVDF 80
Cdd:PRK13541 1 MLSLHQLQFNIEQKN-LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 81 efpSLYEKLTAIENLKYFGSLYSKKLLsIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLD 160
Cdd:PRK13541 80 ---GLKLEMTVFENLKFWSEIYNSAET-LYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155
|
170 180
....*....|....*....|....*.
gi 489525481 161 PSNSKVMKDIILSEKSKGKTIILTTH 186
Cdd:PRK13541 156 KENRDLLNNLIVMKANSGGIVLLSSH 181
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
31-160 |
3.40e-06 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 47.81 E-value: 3.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 31 GFLGPSGAGKSTLQKILIGMITNYGGSVIV-NGVeskrhsnkfyeNIGVDFEFPSLYEKLTAIEN-----------LKYF 98
Cdd:PRK11819 37 GVLGLNGAGKSTLLRIMAGVDKEFEGEARPaPGI-----------KVGYLPQEPQLDPEKTVRENveegvaevkaaLDRF 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 99 ---GSLYSKKLLSIDELLKSVG-LENE------------------------ANKRVSEYSKGMKSRLNFIKALLHNPDIL 150
Cdd:PRK11819 106 neiYAAYAEPDADFDALAAEQGeLQEIidaadawdldsqleiamdalrcppWDAKVTKLSGGERRRVALCRLLLEKPDML 185
|
170
....*....|
gi 489525481 151 FLDEPTSGLD 160
Cdd:PRK11819 186 LLDEPTNHLD 195
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
1-216 |
6.35e-06 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 46.36 E-value: 6.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 1 MITVDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYG--------GSVIVNG-----VESKR 67
Cdd:PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGaprgarvtGDVTLNGeplaaIDAPR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 68 HSNK---FYENIGVDFEFpSLYE--KLTAIENLKYFGSLYSKKLLSIDELLKSVGLENEANKRVSEYSKGMKSRLNFIKA 142
Cdd:PRK13547 81 LARLravLPQAAQPAFAF-SAREivLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 143 L--LHNPD-------ILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILT-THNMLDATELCDRVAFIVNGKISALDTP 212
Cdd:PRK13547 160 LaqLWPPHdaaqpprYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAiVHDPNLAARHADRIAMLADGAIVAHGAP 239
|
....
gi 489525481 213 HNLI 216
Cdd:PRK13547 240 ADVL 243
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
2-188 |
8.64e-06 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 46.95 E-value: 8.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 2 ITVDDLSFSYTDR---DFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHSN-KFYEN-I 76
Cdd:PTZ00265 383 IQFKNVRFHYDTRkdvEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINlKWWRSkI 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 77 GVDFEFPSLYEKlTAIENLKYfgSLYS-KKLLSIDELLKSVGLENEANK------------------------------- 124
Cdd:PTZ00265 463 GVVSQDPLLFSN-SIKNNIKY--SLYSlKDLEALSNYYNEDGNDSQENKnkrnscrakcagdlndmsnttdsneliemrk 539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 125 ------------------------------------RVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLD-PSNSKVM 167
Cdd:PTZ00265 540 nyqtikdsevvdvskkvlihdfvsalpdkyetlvgsNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDnKSEYLVQ 619
|
250 260
....*....|....*....|.
gi 489525481 168 KDIILSEKSKGKTIILTTHNM 188
Cdd:PTZ00265 620 KTINNLKGNENRITIIIAHRL 640
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
17-188 |
1.10e-05 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 46.00 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVivngveskRHSNKFYENIGVDFEFPSlyeklTAIENLk 96
Cdd:cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI--------KHSGRISFSSQFSWIMPG-----TIKENI- 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 97 YFGSLYSK-KLLSIdelLKSVGLENEANKRVSE-----------YSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSNS 164
Cdd:cd03291 119 IFGVSYDEyRYKSV---VKACQLEEDITKFPEKdntvlgeggitLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE 195
|
170 180
....*....|....*....|....
gi 489525481 165 KVMKDIILSEKSKGKTIILTTHNM 188
Cdd:cd03291 196 KEIFESCVCKLMANKTRILVTSKM 219
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
20-63 |
1.23e-05 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 46.06 E-value: 1.23e-05
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 489525481 20 INFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVNGV 63
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGK 315
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
127-189 |
1.44e-05 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 45.46 E-value: 1.44e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489525481 127 SEYSKGMKSRLNFIKALL---HNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNML 189
Cdd:pfam13304 235 FELSDGTKRLLALLAALLsalPKGGLLLIDEPESGLHPKLLRRLLELLKELSRNGAQLILTTHSPL 300
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
23-198 |
1.90e-05 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 44.10 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 23 EVGKGEILGFLGPSGAGKSTLQKILigmitnyGGSVIVNGveskrhsnkfyENIGVDFEFPSlyekltaienlkyfgslY 102
Cdd:cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKIL-------AGQLIPNG-----------DNDEWDGITPV-----------------Y 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 103 SKKLLSIdellksvgleneankrvseySKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSN----SKVMKDiiLSEKSKg 178
Cdd:cd03222 66 KPQYIDL--------------------SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQrlnaARAIRR--LSEEGK- 122
|
170 180
....*....|....*....|
gi 489525481 179 KTIILTTHNMLDATELCDRV 198
Cdd:cd03222 123 KTALVVEHDLAVLDYLSDRI 142
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
4-58 |
3.86e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 44.94 E-value: 3.86e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 489525481 4 VDDLSFSYTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSV 58
Cdd:PRK11147 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
11-206 |
3.95e-05 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 44.78 E-value: 3.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 11 YTDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGmiTNYG----GSVIVNGVEskrhsnkfyenigVDFEFPSly 86
Cdd:NF040905 270 HPERKVVDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFG--RSYGrnisGTVFKDGKE-------------VDVSTVS-- 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 87 eklTAI--------ENLKYFGslyskkLLSIDELLKSVGL-------------ENEANKRVSEYSKGMKSRLNFI----- 140
Cdd:NF040905 333 ---DAIdaglayvtEDRKGYG------LNLIDDIKRNITLanlgkvsrrgvidENEEIKVAEEYRKKMNIKTPSVfqkvg 403
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489525481 141 -------------KALLHNPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKI 206
Cdd:NF040905 404 nlsggnqqkvvlsKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEGKGVIVISSELPELLGMCDRIYVMNEGRI 482
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
20-216 |
4.17e-05 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 44.41 E-value: 4.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 20 INFEVGKGEILGFLGPSGAGKSTLQKILIGmITNYGGSVIVNGVE---------SKRHSNKFY-ENIGVDFEFP------ 83
Cdd:PRK15093 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICG-VTKDNWRVTADRMRfddidllrlSPRERRKLVgHNVSMIFQEPqscldp 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 84 --SLYEKLT-AIENLKYFGSLYS----KKLLSIdELLKSVGLENEANKRVS---EYSKGMKSRLNFIKALLHNPDILFLD 153
Cdd:PRK15093 105 seRVGRQLMqNIPGWTYKGRWWQrfgwRKRRAI-ELLHRVGIKDHKDAMRSfpyELTEGECQKVMIAIALANQPRLLIAD 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489525481 154 EPTSGLDP-SNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISALDTPHNLI 216
Cdd:PRK15093 184 EPTNAMEPtTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELV 247
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
19-208 |
7.71e-05 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 43.76 E-value: 7.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 19 NINFEVGKGEILGFLGPSGAGKSTLQKILIGMITN-YGGSVIVNGVESK-RHSNKFYEN-------------------IG 77
Cdd:PRK13549 280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGrWEGEIFIDGKPVKiRNPQQAIAQgiamvpedrkrdgivpvmgVG 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 78 VDFEFPSL--YEKLTAIENlkyfgslySKKLLSIDELLKSVGLEN-EANKRVSEYSKGMKSRLNFIKALLHNPDILFLDE 154
Cdd:PRK13549 360 KNITLAALdrFTGGSRIDD--------AAELKTILESIQRLKVKTaSPELAIARLSGGNQQKAVLAKCLLLNPKILILDE 431
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 489525481 155 PTSGLDPSNSKVMKDIILSEKSKGKTIILTTHNMLDATELCDRVAFIVNGKISA 208
Cdd:PRK13549 432 PTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKG 485
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
17-186 |
3.03e-04 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 42.04 E-value: 3.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNYGGSVIVngvesKRHSNKFYENIGVDFEFPSLYEKLT---AIE 93
Cdd:TIGR00954 468 IESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTK-----PAKGKLFYVPQRPYMTLGTLRDQIIypdSSE 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 94 NLKYFGslYSKKLLsiDELLKSVGLENEANKRVS---------EYSKGMKSRLNFIKALLHNPDILFLDEPTSGLDPSns 164
Cdd:TIGR00954 543 DMKRRG--LSDKDL--EQILDNVQLTHILEREGGwsavqdwmdVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVD-- 616
|
170 180
....*....|....*....|...
gi 489525481 165 kvMKDIILSE-KSKGKTIILTTH 186
Cdd:TIGR00954 617 --VEGYMYRLcREFGITLFSVSH 637
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
130-187 |
4.02e-04 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 40.04 E-value: 4.02e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489525481 130 SKGMKSRLNFIKAL---LHNPDILF-LDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHN 187
Cdd:cd03227 79 SGGEKELSALALILalaSLKPRPLYiLDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHL 140
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
12-162 |
6.49e-04 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 41.25 E-value: 6.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 12 TDRDFLQNINFEVGKGEILGFLGPSGAGKSTLQKILIGMITNY----GGSVIVNGV---ESKRH--SNKFYeNIGVDFEF 82
Cdd:TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFhigvEGVITYDGItpeEIKKHyrGDVVY-NAETDVHF 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 83 PSL--YEKLTAIENLKYFGSLYskKLLSIDELLKSV--------GLENEANKRVSE-----YSKGMKSRLNFIKALLHNP 147
Cdd:TIGR00956 151 PHLtvGETLDFAARCKTPQNRP--DGVSREEYAKHIadvymatyGLSHTRNTKVGNdfvrgVSGGERKRVSIAEASLGGA 228
|
170
....*....|....*
gi 489525481 148 DILFLDEPTSGLDPS 162
Cdd:TIGR00956 229 KIQCWDNATRGLDSA 243
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
17-201 |
1.88e-03 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 38.46 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 17 LQNINFEVGKGEILGFLGPSGAGKSTLqkiligmitnyggsvivngveskrhsnkfyenigvdfefpsLYEKLTAIENLK 96
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTL-----------------------------------------VNEGLYASGKAR 49
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 97 YFGSL---YSKKLLSIDEL--LKSVGLEN-EANKRVSEYSKGMKSRLNFIKAL-LHNPDILF-LDEPTSGLDPSNSKVMK 168
Cdd:cd03238 50 LISFLpkfSRNKLIFIDQLqfLIDVGLGYlTLGQKLSTLSGGELQRVKLASELfSEPPGTLFiLDEPSTGLHQQDINQLL 129
|
170 180 190
....*....|....*....|....*....|...
gi 489525481 169 DIILSEKSKGKTIILTTHNmLDATELCDRVAFI 201
Cdd:cd03238 130 EVIKGLIDLGNTVILIEHN-LDVLSSADWIIDF 161
|
|
| Guanylate_kin |
pfam00625 |
Guanylate kinase; |
33-115 |
2.09e-03 |
|
Guanylate kinase;
Pssm-ID: 395500 Cd Length: 182 Bit Score: 38.13 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 33 LGPSGAGKSTLQKILIGMITNYGGSVIVNGVESKRHsnkfYENIGVDFEFPSlYEKLTA-------IENLKYFGSLYSKK 105
Cdd:pfam00625 8 SGPSGVGKSHIKKALLSEYPDKFGYSVPHTTRPPRK----GEVDGKDYYFVS-KEEMERdisanefLEYAQFSGNMYGTS 82
|
90
....*....|
gi 489525481 106 LLSIDELLKS 115
Cdd:pfam00625 83 VETIEQIHEQ 92
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
89-198 |
4.08e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 38.66 E-value: 4.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 89 LTAIENLKYFgsLYSKKLLSIDELLKSVGLENEANKR-VSEYSKGMKSRLNFIKALLH---NPDILFLDEPTSGLDPSNS 164
Cdd:PRK00635 771 MTAYEAEKFF--LDEPSIHEKIHALCSLGLDYLPLGRpLSSLSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDI 848
|
90 100 110
....*....|....*....|....*....|....
gi 489525481 165 KVMKDIILSEKSKGKTIILTTHNMlDATELCDRV 198
Cdd:PRK00635 849 KALIYVLQSLTHQGHTVVIIEHNM-HVVKVADYV 881
|
|
| fliI |
PRK07960 |
flagellum-specific ATP synthase FliI; |
24-76 |
4.23e-03 |
|
flagellum-specific ATP synthase FliI;
Pssm-ID: 181182 [Multi-domain] Cd Length: 455 Bit Score: 38.23 E-value: 4.23e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 489525481 24 VGKGEILGFLGPSGAGKStlqkILIGMITNYG-GSVIVNGV--ESKRHSNKFYENI 76
Cdd:PRK07960 172 VGRGQRMGLFAGSGVGKS----VLLGMMARYTqADVIVVGLigERGREVKDFIENI 223
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
124-160 |
4.71e-03 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 38.30 E-value: 4.71e-03
10 20 30
....*....|....*....|....*....|....*..
gi 489525481 124 KRVSEYSKGMKSRLNFIKALLHNPDILFLDEPTSGLD 160
Cdd:PLN03073 340 KATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
|
|
| VirB4 |
COG3451 |
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ... |
33-60 |
6.08e-03 |
|
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain] Cd Length: 546 Bit Score: 38.00 E-value: 6.08e-03
10 20
....*....|....*....|....*...
gi 489525481 33 LGPSGAGKSTLQKILIGMITNYGGSVIV 60
Cdd:COG3451 210 LGPSGSGKSFLLKLLLLQLLRYGARIVI 237
|
|
| ATPase_flagellum-secretory_path_III |
cd01136 |
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; ... |
24-60 |
6.10e-03 |
|
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton-driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Pssm-ID: 410880 [Multi-domain] Cd Length: 265 Bit Score: 37.54 E-value: 6.10e-03
10 20 30
....*....|....*....|....*....|....*...
gi 489525481 24 VGKGEILGFLGPSGAGKSTlqkiLIGMITNYGGS-VIV 60
Cdd:cd01136 64 CGEGQRIGIFAGSGVGKST----LLGMIARNTDAdVNV 97
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
115-194 |
7.59e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 37.29 E-value: 7.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 115 SVGLENEANKRVSEYSKGMKSR--LNFIKALLH-----NPDILFLDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTH- 186
Cdd:COG3593 149 SLRIEDGKELPLDRLGSGFQRLilLALLSALAElkrapANPILLIEEPEAHLHPQAQRRLLKLLKELSEKPNQVIITTHs 228
|
....*....
gi 489525481 187 -NMLDATEL 194
Cdd:COG3593 229 pHLLSEVPL 237
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
152-226 |
8.68e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 37.50 E-value: 8.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489525481 152 LDEPTSGLDPSNSKVMKDIILSEKSKGKTIILTTHN--MLdatELCDRV------AFIVNGKISALDTPHNLIMSKGAIK 223
Cdd:PRK00635 502 LDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDeqMI---SLADRIidigpgAGIFGGEVLFNGSPREFLAKSDSLT 578
|
...
gi 489525481 224 VRY 226
Cdd:PRK00635 579 AKY 581
|
|
| |
