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Conserved domains on  [gi|489525689|ref|WP_003430450|]
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zinc ribbon domain-containing protein [Clostridioides difficile]

Protein Classification

zinc ribbon domain-containing protein( domain architecture ID 12119914)

zinc ribbon domain-containing protein consists of a pair of zinc ribbon domains; similar to Bacillus subtilis protein YvbI

Gene Ontology:  GO:0008270
PubMed:  32851833

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DZR super family cl25536
Double zinc ribbon; This family consists of a pair of zinc ribbon domains.
 105-155 4.41e-04

Double zinc ribbon; This family consists of a pair of zinc ribbon domains.


The actual alignment was detected with superfamily member pfam12773:

Pssm-ID: 432773 [Multi-domain]  Cd Length: 45  Bit Score: 36.20  E-value: 4.41e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 489525689  105 CECGYVGNVNDKYCAECGKKFELenecddfIVCGYCENEIDTEAEFCPCCG 155
Cdd:pfam12773   2 PNCGHPNPPGAKFCPACGTPLKP-------DRCPNCGAPVPPNARFCPYCG 45
 
Name Accession Description Interval E-value
DZR pfam12773
Double zinc ribbon; This family consists of a pair of zinc ribbon domains.
 105-155 4.41e-04

Double zinc ribbon; This family consists of a pair of zinc ribbon domains.


Pssm-ID: 432773 [Multi-domain]  Cd Length: 45  Bit Score: 36.20  E-value: 4.41e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 489525689  105 CECGYVGNVNDKYCAECGKKFELenecddfIVCGYCENEIDTEAEFCPCCG 155
Cdd:pfam12773   2 PNCGHPNPPGAKFCPACGTPLKP-------DRCPNCGAPVPPNARFCPYCG 45
 
Name Accession Description Interval E-value
DZR pfam12773
Double zinc ribbon; This family consists of a pair of zinc ribbon domains.
 105-155 4.41e-04

Double zinc ribbon; This family consists of a pair of zinc ribbon domains.


Pssm-ID: 432773 [Multi-domain]  Cd Length: 45  Bit Score: 36.20  E-value: 4.41e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 489525689  105 CECGYVGNVNDKYCAECGKKFELenecddfIVCGYCENEIDTEAEFCPCCG 155
Cdd:pfam12773   2 PNCGHPNPPGAKFCPACGTPLKP-------DRCPNCGAPVPPNARFCPYCG 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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