NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|489526369|ref|WP_003431122|]
View 

MULTISPECIES: mandelate racemase/muconate lactonizing enzyme family protein [Pseudomonas]

Protein Classification

mandelate racemase/muconate lactonizing enzyme family protein( domain architecture ID 10129550)

mandelate racemase/muconate lactonizing enzyme (MLE) family protein similar to Bradyrhizobium diazoefficiens D(-)-tartrate dehydratase that catalyzes the dehydration of D-tartrate to oxaloacetate

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
MR_like_1 cd03326
Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this ...
2-386 0e+00

Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.


:

Pssm-ID: 239442 [Multi-domain]  Cd Length: 385  Bit Score: 723.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369   2 RIVDIREKTVSIASPIANAYIDFSKMTCSVVAVITDVIRDGKPVIGYGFNSNGRYGQGALMRDRFLARITEADPDTLVDH 81
Cdd:cd03326    1 RIVAIREKAIPLSSPIANAYVDFSGLTTSLVAVVTDVVRDGRPVVGYGFDSIGRYAQGGLLRERFIPRLLAAAPDSLLDD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369  82 ENNNLDPFAIWKTLMTNEKPGGHGERSVAVGTIDMAVWDAVAKIEGKPLYRLLADRYREGVADDKVWVYAAGGYYYPGKD 161
Cdd:cd03326   81 AGGNLDPARAWAAMMRNEKPGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPRVPVYAAGGYYYPGDD 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 162 QTKLKAEMQSYLDRGYDVVKMKIGAVPLDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVG 241
Cdd:cd03326  161 LGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPYGLRWYEEPG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 242 DPLDYALQAELANHYELPMATGENLFSHQDARNLLRHGGMRPDRDYLQFDCALSYGLVEYMRTLKVMEEMGWSSRRVVPH 321
Cdd:cd03326  241 DPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEAHGWSRRRFFPH 320
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489526369 322 GGHQMSLNIAAGLHLGGNESYPDVFQPFGGFADGIKVENGYVGLPDIPGVGFEAKSALYAVMREL 386
Cdd:cd03326  321 GGHLMSLHIAAGLGLGGNESYPDVFQPFGGFADGCKVENGYVRLPDAPGIGFEGKAELAAEMREL 385
 
Name Accession Description Interval E-value
MR_like_1 cd03326
Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this ...
2-386 0e+00

Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.


Pssm-ID: 239442 [Multi-domain]  Cd Length: 385  Bit Score: 723.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369   2 RIVDIREKTVSIASPIANAYIDFSKMTCSVVAVITDVIRDGKPVIGYGFNSNGRYGQGALMRDRFLARITEADPDTLVDH 81
Cdd:cd03326    1 RIVAIREKAIPLSSPIANAYVDFSGLTTSLVAVVTDVVRDGRPVVGYGFDSIGRYAQGGLLRERFIPRLLAAAPDSLLDD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369  82 ENNNLDPFAIWKTLMTNEKPGGHGERSVAVGTIDMAVWDAVAKIEGKPLYRLLADRYREGVADDKVWVYAAGGYYYPGKD 161
Cdd:cd03326   81 AGGNLDPARAWAAMMRNEKPGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPRVPVYAAGGYYYPGDD 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 162 QTKLKAEMQSYLDRGYDVVKMKIGAVPLDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVG 241
Cdd:cd03326  161 LGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPYGLRWYEEPG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 242 DPLDYALQAELANHYELPMATGENLFSHQDARNLLRHGGMRPDRDYLQFDCALSYGLVEYMRTLKVMEEMGWSSRRVVPH 321
Cdd:cd03326  241 DPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEAHGWSRRRFFPH 320
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489526369 322 GGHQMSLNIAAGLHLGGNESYPDVFQPFGGFADGIKVENGYVGLPDIPGVGFEAKSALYAVMREL 386
Cdd:cd03326  321 GGHLMSLHIAAGLGLGGNESYPDVFQPFGGFADGCKVENGYVRLPDAPGIGFEGKAELAAEMREL 385
RspA COG4948
L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily [Cell wall/membrane ...
1-374 1.40e-60

L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily [Cell wall/membrane/envelope biogenesis, General function prediction only]; L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 443975 [Multi-domain]  Cd Length: 359  Bit Score: 199.66  E-value: 1.40e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369   1 MRIVDIREKTVSI--ASPIANAYIDFSKMTCSVVAVITDvirDGkpVIGYG---FNSNGRYGQGALMRDRFLARITEADP 75
Cdd:COG4948    1 MKITDIEVYPVRLplKRPFTISRGTRTERDVVLVRVETD---DG--ITGWGeavPGGTGAEAVAAALEEALAPLLIGRDP 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369  76 dtlvdhennnLDPFAIWKTLMTNEKPGGHgersvAVGTIDMAVWDAVAKIEGKPLYRLLADRYRegvadDKVWVYAAGGY 155
Cdd:COG4948   76 ----------LDIEALWQRLYRALPGNPA-----AKAAVDMALWDLLGKALGVPVYQLLGGKVR-----DRVPVYATLGI 135
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 156 YYPgkdqTKLKAEMQSYLDRGYDVVKMKIGAVPLDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLF 235
Cdd:COG4948  136 DTP----EEMAEEAREAVARGFRALKLKVGGPDPEEDVERVRAVREAVGPDARLRVDANGAWTLEEAIRLLRALEDLGLE 211
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 236 WYEEVGDPLDYALQAELANHYELPMATGENLFSHQDARNLLRHGGMrpdrDYLQFDCALSYGLVEYMRTLKVMEEMGwss 315
Cdd:COG4948  212 WIEQPLPAEDLEGLAELRRATPVPIAADESLTSRADFRRLIEAGAV----DIVNIKLSKVGGLTEALRIAALAEAHG--- 284
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489526369 316 RRVVPHGGHQMSLNIAAGLHLGGNESYPDVFQPFGG-------FADGIKVENGYVGLPDIPGVGFE 374
Cdd:COG4948  285 VPVMPHCMLESGIGLAAALHLAAALPNFDIVELDGPllladdlVEDPLRIEDGYLTVPDGPGLGVE 350
MR_MLE_C pfam13378
Enolase C-terminal domain-like; This domain appears at the C-terminus of many of the proteins ...
164-374 3.29e-45

Enolase C-terminal domain-like; This domain appears at the C-terminus of many of the proteins that carry the MR_MLE_N pfam02746 domain. EC:4.2.1.40.


Pssm-ID: 463862 [Multi-domain]  Cd Length: 217  Bit Score: 155.03  E-value: 3.29e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369  164 KLKAEMQSYLDR-GYDVVKMKIGAVPLDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVGD 242
Cdd:pfam13378   1 ELAAEARRAVEArGFRAFKLKVGGPDPEEDVERVRAVREAVGPGVDLMVDANGAWSVAEAIRLARALEELGLLWIEEPVP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369  243 PLDYALQAELANHYELPMATGENLFSHQDARNLLRHGGMrpdrDYLQFDCALSYGLVEYMRTLKVMEEMGWssrRVVPHG 322
Cdd:pfam13378  81 PDDLEGLARLRRATPVPIATGESLYSREDFRRLLEAGAV----DIVQPDVTRVGGITEALKIAALAEAFGV---PVAPHS 153
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369  323 GHqMSLNIAAGLHLG---GNESYPDVFQPFGGFADGI-----KVENGYVGLPDIPGVGFE 374
Cdd:pfam13378 154 GG-GPIGLAASLHLAaavPNLLIQEYFLDPLLLEDDLlteplEVEDGRVAVPDGPGLGVE 212
MR_MLE smart00922
Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase (MR) ...
164-258 1.77e-21

Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase (MR) and muconate lactonizing enzyme (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyze mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures.. This entry represents the C-terminal region of these proteins.


Pssm-ID: 214914 [Multi-domain]  Cd Length: 97  Bit Score: 88.11  E-value: 1.77e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369   164 KLKAEMQSYL-DRGYDVVKMKIGAvPLDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVGD 242
Cdd:smart00922   3 ELAEAARRAVaEAGFRAVKVKVGG-GPLEDLARVAAVREAVGPDADLMVDANGAWTAEEAIRALEALDELGLEWIEEPVP 81
                           90
                   ....*....|....*.
gi 489526369   243 PLDYALQAELANHYEL 258
Cdd:smart00922  82 PDDLEGLAELRRATPI 97
PRK14017 PRK14017
galactonate dehydratase; Provisional
110-374 4.40e-19

galactonate dehydratase; Provisional


Pssm-ID: 184455 [Multi-domain]  Cd Length: 382  Bit Score: 87.64  E-value: 4.40e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 110 AVGTIDMAVWDAVAKIEGKPLYRLLADRYRegvadDKVWVYAAGGyyypGKDQTKLKAEMQSYLDRGYDVVKMKiGAVPL 189
Cdd:PRK14017  82 AIAGIDQALWDIKGKALGVPVHELLGGLVR-----DRIRVYSWIG----GDRPADVAEAARARVERGFTAVKMN-GTEEL 151
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 190 ---------DEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVGDPLDYALQAELANHYELPM 260
Cdd:PRK14017 152 qyidsprkvDAAVARVAAVREAVGPEIGIGVDFHGRVHKPMAKVLAKELEPYRPMFIEEPVLPENAEALPEIAAQTSIPI 231
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 261 ATGENLFSHQDARNLLRHGGMrpdrDYLQFDCALSYGLVEyMRTLKVMEEMGWSSrrVVPH---GghqmSLNIAAGLHLG 337
Cdd:PRK14017 232 ATGERLFSRWDFKRVLEAGGV----DIIQPDLSHAGGITE-CRKIAAMAEAYDVA--LAPHcplG----PIALAACLQVD 300
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489526369 338 -------------------GNE--SY---PDVFQPfggfadgikvENGYVGLPDIPGVGFE 374
Cdd:PRK14017 301 avspnafiqeqslgihynqGADllDYvknKEVFAY----------EDGFVAIPTGPGLGIE 351
 
Name Accession Description Interval E-value
MR_like_1 cd03326
Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this ...
2-386 0e+00

Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.


Pssm-ID: 239442 [Multi-domain]  Cd Length: 385  Bit Score: 723.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369   2 RIVDIREKTVSIASPIANAYIDFSKMTCSVVAVITDVIRDGKPVIGYGFNSNGRYGQGALMRDRFLARITEADPDTLVDH 81
Cdd:cd03326    1 RIVAIREKAIPLSSPIANAYVDFSGLTTSLVAVVTDVVRDGRPVVGYGFDSIGRYAQGGLLRERFIPRLLAAAPDSLLDD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369  82 ENNNLDPFAIWKTLMTNEKPGGHGERSVAVGTIDMAVWDAVAKIEGKPLYRLLADRYREGVADDKVWVYAAGGYYYPGKD 161
Cdd:cd03326   81 AGGNLDPARAWAAMMRNEKPGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPRVPVYAAGGYYYPGDD 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 162 QTKLKAEMQSYLDRGYDVVKMKIGAVPLDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVG 241
Cdd:cd03326  161 LGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPYGLRWYEEPG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 242 DPLDYALQAELANHYELPMATGENLFSHQDARNLLRHGGMRPDRDYLQFDCALSYGLVEYMRTLKVMEEMGWSSRRVVPH 321
Cdd:cd03326  241 DPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEAHGWSRRRFFPH 320
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489526369 322 GGHQMSLNIAAGLHLGGNESYPDVFQPFGGFADGIKVENGYVGLPDIPGVGFEAKSALYAVMREL 386
Cdd:cd03326  321 GGHLMSLHIAAGLGLGGNESYPDVFQPFGGFADGCKVENGYVRLPDAPGIGFEGKAELAAEMREL 385
MR_like cd03316
Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup ...
2-374 2.58e-78

Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).


Pssm-ID: 239432 [Multi-domain]  Cd Length: 357  Bit Score: 245.21  E-value: 2.58e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369   2 RIVDIRekTVSIASPIANAYIDFSKMTCSVVAVITDvirDGkpVIGYGFNSNGRYGQG--ALMRDRFLARITEADPdtlv 79
Cdd:cd03316    1 KITDVE--TFVLRVPLPEPGGAVTWRNLVLVRVTTD---DG--ITGWGEAYPGGRPSAvaAAIEDLLAPLLIGRDP---- 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369  80 dhennnLDPFAIWKTLMTNEKPGG-HGERSVAVGTIDMAVWDAVAKIEGKPLYRLLADRYRegvadDKVWVYAAGGYYYP 158
Cdd:cd03316   70 ------LDIERLWEKLYRRLFWRGrGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGKVR-----DRVRVYASGGGYDD 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 159 GKDQtkLKAEMQSYLDRGYDVVKMKIGAVP-----LDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYN 233
Cdd:cd03316  139 SPEE--LAEEAKRAVAEGFTAVKLKVGGPDsggedLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYD 216
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 234 LFWYEEVGDPLDYALQAELANHYELPMATGENLFSHQDARNLLRHGGMrpdrDYLQFDCALSYGLVEYMRTLKVMEEMGw 313
Cdd:cd03316  217 LFWFEEPVPPDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAV----DIIQPDVTKVGGITEAKKIAALAEAHG- 291
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489526369 314 ssRRVVPHG-----GHQMSLNIAAGL-HLGGNESYPDVFQPFGGFA-DGIKVENGYVGLPDIPGVGFE 374
Cdd:cd03316  292 --VRVAPHGaggpiGLAASLHLAAALpNFGILEYHLDDLPLREDLFkNPPEIEDGYVTVPDRPGLGVE 357
RspA COG4948
L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily [Cell wall/membrane ...
1-374 1.40e-60

L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily [Cell wall/membrane/envelope biogenesis, General function prediction only]; L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 443975 [Multi-domain]  Cd Length: 359  Bit Score: 199.66  E-value: 1.40e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369   1 MRIVDIREKTVSI--ASPIANAYIDFSKMTCSVVAVITDvirDGkpVIGYG---FNSNGRYGQGALMRDRFLARITEADP 75
Cdd:COG4948    1 MKITDIEVYPVRLplKRPFTISRGTRTERDVVLVRVETD---DG--ITGWGeavPGGTGAEAVAAALEEALAPLLIGRDP 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369  76 dtlvdhennnLDPFAIWKTLMTNEKPGGHgersvAVGTIDMAVWDAVAKIEGKPLYRLLADRYRegvadDKVWVYAAGGY 155
Cdd:COG4948   76 ----------LDIEALWQRLYRALPGNPA-----AKAAVDMALWDLLGKALGVPVYQLLGGKVR-----DRVPVYATLGI 135
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 156 YYPgkdqTKLKAEMQSYLDRGYDVVKMKIGAVPLDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLF 235
Cdd:COG4948  136 DTP----EEMAEEAREAVARGFRALKLKVGGPDPEEDVERVRAVREAVGPDARLRVDANGAWTLEEAIRLLRALEDLGLE 211
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 236 WYEEVGDPLDYALQAELANHYELPMATGENLFSHQDARNLLRHGGMrpdrDYLQFDCALSYGLVEYMRTLKVMEEMGwss 315
Cdd:COG4948  212 WIEQPLPAEDLEGLAELRRATPVPIAADESLTSRADFRRLIEAGAV----DIVNIKLSKVGGLTEALRIAALAEAHG--- 284
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489526369 316 RRVVPHGGHQMSLNIAAGLHLGGNESYPDVFQPFGG-------FADGIKVENGYVGLPDIPGVGFE 374
Cdd:COG4948  285 VPVMPHCMLESGIGLAAALHLAAALPNFDIVELDGPllladdlVEDPLRIEDGYLTVPDGPGLGVE 350
MR_MLE_C pfam13378
Enolase C-terminal domain-like; This domain appears at the C-terminus of many of the proteins ...
164-374 3.29e-45

Enolase C-terminal domain-like; This domain appears at the C-terminus of many of the proteins that carry the MR_MLE_N pfam02746 domain. EC:4.2.1.40.


Pssm-ID: 463862 [Multi-domain]  Cd Length: 217  Bit Score: 155.03  E-value: 3.29e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369  164 KLKAEMQSYLDR-GYDVVKMKIGAVPLDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVGD 242
Cdd:pfam13378   1 ELAAEARRAVEArGFRAFKLKVGGPDPEEDVERVRAVREAVGPGVDLMVDANGAWSVAEAIRLARALEELGLLWIEEPVP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369  243 PLDYALQAELANHYELPMATGENLFSHQDARNLLRHGGMrpdrDYLQFDCALSYGLVEYMRTLKVMEEMGWssrRVVPHG 322
Cdd:pfam13378  81 PDDLEGLARLRRATPVPIATGESLYSREDFRRLLEAGAV----DIVQPDVTRVGGITEALKIAALAEAFGV---PVAPHS 153
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369  323 GHqMSLNIAAGLHLG---GNESYPDVFQPFGGFADGI-----KVENGYVGLPDIPGVGFE 374
Cdd:pfam13378 154 GG-GPIGLAASLHLAaavPNLLIQEYFLDPLLLEDDLlteplEVEDGRVAVPDGPGLGVE 212
enolase_like cd00308
Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is ...
103-337 2.82e-35

Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.


Pssm-ID: 238188 [Multi-domain]  Cd Length: 229  Bit Score: 129.37  E-value: 2.82e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 103 GHGErsvAVGTIDMAVWDAVAKIEGKPLYRLLADRYREGVAddkvwVYAAggyyypgkdqtklkaemqsyldrgydvvkm 182
Cdd:cd00308   39 GWGE---VISGIDMALWDLAAKALGVPLAELLGGGSRDRVP-----AYGS------------------------------ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 183 kigavpldedIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVGDPLDYALQAELANHYELPMAT 262
Cdd:cd00308   81 ----------IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGLAWIEEPCAPDDLEGYAALRRRTGIPIAA 150
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489526369 263 GENLFSHQDARNLLRHGGmrpdRDYLQFDCALSYGLVEYMRTLKVMEEMGWssrRVVPHGGHQMSLNIAAGLHLG 337
Cdd:cd00308  151 DESVTTVDDALEALELGA----VDILQIKPTRVGGLTESRRAADLAEAFGI---RVMVHGTLESSIGTAAALHLA 218
MR_like_2 cd03327
Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this ...
102-374 7.72e-32

Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.


Pssm-ID: 239443 [Multi-domain]  Cd Length: 341  Bit Score: 123.21  E-value: 7.72e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 102 GGHGERSVAVGTIDMAVWDAVAKIEGKPLYRLLADRYRegvadDKVWVYAAGGYYYPGKdqtKLKAEMQSYLDRGYDVVK 181
Cdd:cd03327   69 GRKGIAMAAISAVDLALWDLLGKIRGEPVYKLLGGRTR-----DKIPAYASGLYPTDLD---ELPDEAKEYLKEGYRGMK 140
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 182 MKIGAVP------LDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVGDPLDYALQAELANH 255
Cdd:cd03327  141 MRFGYGPsdghagLRKNVELVRAIREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYELRWIEEPLIPDDIEGYAELKKA 220
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 256 YELPMATGENLFSHQDARNLLRHGGMrpdrDYLQFDCALSYGLVEyMRTLKVMEEMgwSSRRVVPHGGhqmslNIAAgLH 335
Cdd:cd03327  221 TGIPISTGEHEYTVYGFKRLLEGRAV----DILQPDVNWVGGITE-LKKIAALAEA--YGVPVVPHAS-----QIYN-YH 287
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489526369 336 LGGNES----------YPD-----VFQPFggFADGIKVENGYVGLPDIPGVGFE 374
Cdd:cd03327  288 FIMSEPnspfaeylpnSPDevgnpLFYYI--FLNEPVPVNGYFDLSDKPGFGLE 339
D-galactonate_dehydratase cd03325
D-galactonate dehydratase catalyses the dehydration of galactonate to ...
110-374 4.69e-25

D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactonate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.


Pssm-ID: 239441 [Multi-domain]  Cd Length: 352  Bit Score: 104.72  E-value: 4.69e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 110 AVGTIDMAVWDAVAKIEGKPLYRLLAdryreGVADDKVWVYAAGGyyypGKDQTKLKAEMQSYLDRGYDVVKM----KIG 185
Cdd:cd03325   81 AISGIDQALWDIKGKVLGVPVHQLLG-----GQVRDRVRVYSWIG----GDRPSDVAEAARARREAGFTAVKMnateELQ 151
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 186 AVP----LDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVGDPLDYALQAELANHYELPMA 261
Cdd:cd03325  152 WIDtskkVDAAVERVAALREAVGPDIDIGVDFHGRVSKPMAKDLAKELEPYRLLFIEEPVLPENVEALAEIAARTTIPIA 231
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 262 TGENLFSHQDARNLLRHGGMrpdrDYLQFDCALSYGLVEyMRTLKVMEEMgwSSRRVVPHGGhQMSLNIAAGLHLGGNeS 341
Cdd:cd03325  232 TGERLFSRWDFKELLEDGAV----DIIQPDISHAGGITE-LKKIAAMAEA--YDVALAPHCP-LGPIALAASLHVDAS-T 302
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 489526369 342 YPDVFQPFGGFAD---------------GIKVENGYVGLPDIPGVGFE 374
Cdd:cd03325  303 PNFLIQEQSLGIHynegddlldylvdpeVFDMENGYVKLPTGPGLGIE 350
rTSbeta_L-fuconate_dehydratase cd03324
Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also ...
110-323 5.21e-22

Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.


Pssm-ID: 239440 [Multi-domain]  Cd Length: 415  Bit Score: 96.64  E-value: 5.21e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 110 AVGTIDMAVWDAVAKIEGKPLYRLLAD------------RY--------------REGVADDKVWVYAAGGYYYP----- 158
Cdd:cd03324  110 ATAAVVNAVWDLWAKAEGKPLWKLLVDmtpeelvscidfRYitdaltpeealeilRRGQPGKAAREADLLAEGYPaytts 189
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 159 ----GKDQTKLKAEMQSYLDRGYDVVKMKIGAVPLDeDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNL 234
Cdd:cd03324  190 agwlGYSDEKLRRLCKEALAQGFTHFKLKVGADLED-DIRRCRLAREVIGPDNKLMIDANQRWDVPEAIEWVKQLAEFKP 268
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 235 FWYEEVGDPLDYALQAELAN---HYELPMATGENLFSHQDARNLLRHGGMrpdrDYLQFDCALSYGLVEYMRTLKVMEEM 311
Cdd:cd03324  269 WWIEEPTSPDDILGHAAIRKalaPLPIGVATGEHCQNRVVFKQLLQAGAI----DVVQIDSCRLGGVNENLAVLLMAAKF 344
                        250
                 ....*....|..
gi 489526369 312 GwssRRVVPHGG 323
Cdd:cd03324  345 G---VPVCPHAG 353
MR_MLE smart00922
Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase (MR) ...
164-258 1.77e-21

Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase (MR) and muconate lactonizing enzyme (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyze mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures.. This entry represents the C-terminal region of these proteins.


Pssm-ID: 214914 [Multi-domain]  Cd Length: 97  Bit Score: 88.11  E-value: 1.77e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369   164 KLKAEMQSYL-DRGYDVVKMKIGAvPLDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVGD 242
Cdd:smart00922   3 ELAEAARRAVaEAGFRAVKVKVGG-GPLEDLARVAAVREAVGPDADLMVDANGAWTAEEAIRALEALDELGLEWIEEPVP 81
                           90
                   ....*....|....*.
gi 489526369   243 PLDYALQAELANHYEL 258
Cdd:smart00922  82 PDDLEGLAELRRATPI 97
MR_like_3 cd03328
Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this ...
86-291 6.91e-20

Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.


Pssm-ID: 239444 [Multi-domain]  Cd Length: 352  Bit Score: 89.78  E-value: 6.91e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369  86 LDPFAIWKTL---MTNEKPGGHGerSVAVGTIDMAVWDAVAKIEGKPLYRLLadryreGVADDKVWVYAAGGY--Yypgk 160
Cdd:cd03328   70 LDPPAAWEAMqraVRNAGRPGVA--AMAISAVDIALWDLKARLLGLPLARLL------GRAHDSVPVYGSGGFtsY---- 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 161 DQTKLKAEMQSYLDRGYDVVKMKIGAVPlDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEV 240
Cdd:cd03328  138 DDDRLREQLSGWVAQGIPRVKMKIGRDP-RRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGVTWFEEP 216
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 489526369 241 GDPLDYALQAELANHYELPM--ATGENLFSHQDARNLLRHGGMrpdrDYLQFD 291
Cdd:cd03328  217 VSSDDLAGLRLVRERGPAGMdiAAGEYAYTLAYFRRLLEAHAV----DVLQAD 265
MLE_like cd03315
Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this ...
112-312 4.13e-19

Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.


Pssm-ID: 239431 [Multi-domain]  Cd Length: 265  Bit Score: 86.24  E-value: 4.13e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 112 GTIDMAVWDAVAKIEGKPLYRLLAdRYREGVADDkvWVYAAGgyyypgkDQTKLKAEMQSYLDRGYDVVKMKIGAvPLDE 191
Cdd:cd03315   46 AAVDMALWDLWGKRLGVPVYLLLG-GYRDRVRVA--HMLGLG-------EPAEVAEEARRALEAGFRTFKLKVGR-DPAR 114
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 192 DIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVGDPLDYALQAELANHYELPMATGENLFSHQD 271
Cdd:cd03315  115 DVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQPLPADDLEGRAALARATDTPIMADESAFTPHD 194
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 489526369 272 ARNLLRHGGMrpdrDYLQFDCALSYGLVEYMRTLKVMEEMG 312
Cdd:cd03315  195 AFRELALGAA----DAVNIKTAKTGGLTKAQRVLAVAEALG 231
PRK14017 PRK14017
galactonate dehydratase; Provisional
110-374 4.40e-19

galactonate dehydratase; Provisional


Pssm-ID: 184455 [Multi-domain]  Cd Length: 382  Bit Score: 87.64  E-value: 4.40e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 110 AVGTIDMAVWDAVAKIEGKPLYRLLADRYRegvadDKVWVYAAGGyyypGKDQTKLKAEMQSYLDRGYDVVKMKiGAVPL 189
Cdd:PRK14017  82 AIAGIDQALWDIKGKALGVPVHELLGGLVR-----DRIRVYSWIG----GDRPADVAEAARARVERGFTAVKMN-GTEEL 151
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 190 ---------DEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVGDPLDYALQAELANHYELPM 260
Cdd:PRK14017 152 qyidsprkvDAAVARVAAVREAVGPEIGIGVDFHGRVHKPMAKVLAKELEPYRPMFIEEPVLPENAEALPEIAAQTSIPI 231
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 261 ATGENLFSHQDARNLLRHGGMrpdrDYLQFDCALSYGLVEyMRTLKVMEEMGWSSrrVVPH---GghqmSLNIAAGLHLG 337
Cdd:PRK14017 232 ATGERLFSRWDFKRVLEAGGV----DIIQPDLSHAGGITE-CRKIAAMAEAYDVA--LAPHcplG----PIALAACLQVD 300
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489526369 338 -------------------GNE--SY---PDVFQPfggfadgikvENGYVGLPDIPGVGFE 374
Cdd:PRK14017 301 avspnafiqeqslgihynqGADllDYvknKEVFAY----------EDGFVAIPTGPGLGIE 351
mandelate_racemase cd03321
Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that ...
102-284 1.42e-18

Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.


Pssm-ID: 239437 [Multi-domain]  Cd Length: 355  Bit Score: 86.00  E-value: 1.42e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 102 GGHGERSVAVGTIDMAVWDAVAKIEGKPLYRLLadryreGVADDKVWVYAAGGYyypgkDQTKLKA-EMQSYLDRGYDVV 180
Cdd:cd03321   92 GYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLL------GGNPRPVQAYDSHGL-----DGAKLATeRAVTAAEEGFHAV 160
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 181 KMKIGAVPLDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVGDPLDYALQAELANHYELPM 260
Cdd:cd03321  161 KTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGLTWIEEPTLQHDYEGHARIASALRTPV 240
                        170       180
                 ....*....|....*....|....*..
gi 489526369 261 ATGENLFSHQDARNLLRHGG---MRPD 284
Cdd:cd03321  241 QMGENWLGPEEMFKALSAGAcdlVMPD 267
MLE cd03318
Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis, ...
108-372 6.77e-17

Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.


Pssm-ID: 239434 [Multi-domain]  Cd Length: 365  Bit Score: 81.21  E-value: 6.77e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 108 SVAVGTIDMAVWDAVAKIEGKPLYRLLADRYREGVadDKVWVYAAGgyyypgkDQTKLKAEMQSYLDRG-YDVVKMKIGA 186
Cdd:cd03318   98 LFAKAAIEMALLDAQGRRLGLPVSELLGGRVRDSL--PVAWTLASG-------DTERDIAEAEEMLEAGrHRRFKLKMGA 168
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 187 VPLDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVGDPLDYALQAELANHYELPMATGENL 266
Cdd:cd03318  169 RPPADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGVELIEQPVPRENLDGLARLRSRNRVPIMADESV 248
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 267 FSHQDARNLLRHGGMrpdrDYLQFDCALSYGLVEYMRTLKVMEEMGwssrrVVPHGGHQM--SLNIAAGLHLGGneSYPD 344
Cdd:cd03318  249 SGPADAFELARRGAA----DVFSLKIAKSGGLRRAQKVAAIAEAAG-----IALYGGTMLesSIGTAASAHLFA--TLPS 317
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 489526369 345 VfqPFGG-------FADGI-----KVENGYVGLPDIPGVG 372
Cdd:cd03318  318 L--PFGCelfgpllLAEDLleeplAYRDGELHVPTGPGLG 355
RspA cd03322
The starvation sensing protein RspA from E.coli and its homologs are lactonizing enzymes whose ...
110-374 5.22e-16

The starvation sensing protein RspA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.


Pssm-ID: 239438 [Multi-domain]  Cd Length: 361  Bit Score: 78.64  E-value: 5.22e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 110 AVGTIDMAVWDAVAKIEGKPLYRLLADRYREGVAddkVWVYAAggyyypGKDQTKLKAEMQSYLDRGYDVVKMKIGAVpl 189
Cdd:cd03322   84 AIAAVDMALWDIKGKAAGMPLYQLLGGKSRDGIM---VYSHAS------GRDIPELLEAVERHLAQGYRAIRVQLPKL-- 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 190 dedirrIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVGDPLDYALQAELANHYELPMATGENLFSH 269
Cdd:cd03322  153 ------FEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRLFWMEDPTPAENQEAFRLIRQHTATPLAVGEVFNSI 226
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 270 QDARNLLRHGGMrpdrDYLQfdCALSY-GLVEYMRTLKVMEEM-----GWssrrvvpHGGHQMS-LNIAAGLHLggNESY 342
Cdd:cd03322  227 WDWQNLIQERLI----DYIR--TTVSHaGGITPARKIADLASLygvrtGW-------HGPTDLSpVGMAAALHL--DLWV 291
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 489526369 343 PDV-FQPFGGFAD--------GIKVENGYVGLPDIPGVGFE 374
Cdd:cd03322  292 PNFgIQEYMRHAEetlevfphSVRFEDGYLHPGEEPGLGVE 332
OSBS cd03320
o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2, ...
161-280 2.16e-15

o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.


Pssm-ID: 239436 [Multi-domain]  Cd Length: 263  Bit Score: 75.37  E-value: 2.16e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 161 DQTKLKAEMQSYLDRGYDVVKMKIGAVPLDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEV 240
Cdd:cd03320   82 GDAAALGEAKAAYGGGYRTVKLKVGATSFEEDLARLRALREALPADAKLRLDANGGWSLEEALAFLEALAAGRIEYIEQP 161
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 489526369 241 GDPLDYALQAELAnhYELPMATGENLFSHQDARNLLRHGG 280
Cdd:cd03320  162 LPPDDLAELRRLA--AGVPIALDESLRRLDDPLALAAAGA 199
L-Ala-DL-Glu_epimerase cd03319
L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The ...
114-279 1.26e-14

L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.


Pssm-ID: 239435 [Multi-domain]  Cd Length: 316  Bit Score: 73.76  E-value: 1.26e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 114 IDMAVWDAVAKIEGKPLYRLLADRYREGVADDkvwvyaaggYYYPGKDQTKLKAEMQSYLDRGYDVVKMKIGAvPLDEDI 193
Cdd:cd03319   96 VDIALWDLEAKLLGLPLYQLWGGGAPRPLETD---------YTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG-DLEDDI 165
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 194 RRIEAVLEVVGDGrRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEvgdPL---DYALQAELANHYELPMATGENLFSHQ 270
Cdd:cd03319  166 ERIRAIREAAPDA-RLRVDANQGWTPEEAVELLRELAELGVELIEQ---PVpagDDDGLAYLRDKSPLPIMADESCFSAA 241

                 ....*....
gi 489526369 271 DARNLLRHG 279
Cdd:cd03319  242 DAARLAGGG 250
MR_like_4 cd03329
Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this ...
110-374 1.62e-13

Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.


Pssm-ID: 239445 [Multi-domain]  Cd Length: 368  Bit Score: 71.27  E-value: 1.62e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 110 AVGTIDMAVWDAVAKIEGKPLYRLLADrYRegvadDKVWVYA--AGGYYYPGKDQTKLKAEM-QSYLDRGYDVVKMKI-G 185
Cdd:cd03329   95 GLGLVDIALWDLAGKYLGLPVHRLLGG-YR-----EKIPAYAstMVGDDLEGLESPEAYADFaEECKALGYRAIKLHPwG 168
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 186 AVPLDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVGDPLDYALQAELANHYELPMATGEN 265
Cdd:cd03329  169 PGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELGFFWYEDPLREASISSYRWLAEKLDIPILGTEH 248
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 266 LFSHQDAR-NLLRHGGMrpdrDYLQFDCALSYGLVEYMRTLKVMEEMGWssrRVVPHGGHqmslniAAGLHLGG---NES 341
Cdd:cd03329  249 SRGALESRaDWVLAGAT----DFLRADVNLVGGITGAMKTAHLAEAFGL---DVELHGNG------AANLHVIAairNTR 315
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 489526369 342 Y-----PDVFQPFGGFADGIKV------ENGYVGLPDIPGVGFE 374
Cdd:cd03329  316 YyerglLHPSQKYDVYAGYLSVlddpvdSDGFVHVPKGPGLGVE 359
NAAAR cd03317
N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of ...
110-279 8.65e-11

N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.


Pssm-ID: 239433 [Multi-domain]  Cd Length: 354  Bit Score: 62.64  E-value: 8.65e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 110 AVGTIDMAVWDAVAKIEGKPLYRLLadryreGVADDKVWVYAAGGYyypGKDQTKLKAEMQSYLDRGYDVVKMKIGAvpl 189
Cdd:cd03317   95 AKAGLEMAVWDLYAKAQGQSLAQYL------GGTRDSIPVGVSIGI---QDDVEQLLKQIERYLEEGYKRIKLKIKP--- 162
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 190 DEDIRRIEAVLEVVGDgRRLAVDANGRFDLQTgIAYAEAIKKYNLFWYEE---VGDPLDYalqAELANHYELPMATGENL 266
Cdd:cd03317  163 GWDVEPLKAVRERFPD-IPLMADANSAYTLAD-IPLLKRLDEYGLLMIEQplaADDLIDH---AELQKLLKTPICLDESI 237
                        170
                 ....*....|...
gi 489526369 267 FSHQDARNLLRHG 279
Cdd:cd03317  238 QSAEDARKAIELG 250
PRK15440 PRK15440
L-rhamnonate dehydratase; Provisional
104-322 4.49e-10

L-rhamnonate dehydratase; Provisional


Pssm-ID: 185337 [Multi-domain]  Cd Length: 394  Bit Score: 60.90  E-value: 4.49e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 104 HGERSVAVGTI---DMAVWDAVAKIEGKPLYRLLADRYRegvadDKVWVYAAGGyyypgkdQTKLKAEMqsyldrGYDVV 180
Cdd:PRK15440 115 YGRKGLVMNTIscvDLALWDLLGKVRGLPVYKLLGGAVR-----DELQFYATGA-------RPDLAKEM------GFIGG 176
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 181 KMKIGAVP------LDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLFWYEEVGDPLDYALQAELAN 254
Cdd:PRK15440 177 KMPLHHGPadgdagLRKNAAMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGLKWIEECLPPDDYWGYRELKR 256
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 255 HYELPM--ATGENLFSHQDARNLLRHGgmrpDRDYLQFDCALSYGLVEYMRTLKVMEEMGwssRRVVPHG 322
Cdd:PRK15440 257 NAPAGMmvTSGEHEATLQGFRTLLEMG----CIDIIQPDVGWCGGLTELVKIAALAKARG---QLVVPHG 319
PRK15072 PRK15072
D-galactonate dehydratase family protein;
110-278 1.52e-09

D-galactonate dehydratase family protein;


Pssm-ID: 237901 [Multi-domain]  Cd Length: 404  Bit Score: 59.15  E-value: 1.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 110 AVGTIDMAVWDAVAKIEGKPLYRLLADRYREGVAddkvwVYAAGGyyypGKDQTKLKAEMQSYLDRGYDVVKMKIG---- 185
Cdd:PRK15072  85 AIAAVDMALWDIKAKAAGMPLYQLLGGASREGVM-----VYGHAN----GRDIDELLDDVARHLELGYKAIRVQCGvpgl 155
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 186 --------------------AVPLDED------IRRI----EAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIKKYNLF 235
Cdd:PRK15072 156 kttygvskgkglayepatkgLLPEEELwstekyLRFVpklfEAVRNKFGFDLHLLHDVHHRLTPIEAARLGKSLEPYRLF 235
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 489526369 236 WYEevgDPLDYALQAELA---NHYELPMATGENLFSHQDARNLLRH 278
Cdd:PRK15072 236 WLE---DPTPAENQEAFRlirQHTTTPLAVGEVFNSIWDCKQLIEE 278
PRK02901 PRK02901
O-succinylbenzoate synthase; Provisional
180-253 1.36e-05

O-succinylbenzoate synthase; Provisional


Pssm-ID: 235084 [Multi-domain]  Cd Length: 327  Bit Score: 46.50  E-value: 1.36e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 180 VKMKIG--AVPLDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTGIAYAEAIkkynlfwyeEVGDPLDYALQ-----AEL 252
Cdd:PRK02901 106 AKVKVAepGQTLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVAAARAL---------DADGPLEYVEQpcatvEEL 176

                 .
gi 489526369 253 A 253
Cdd:PRK02901 177 A 177
PRK02714 PRK02714
o-succinylbenzoate synthase;
170-264 2.79e-04

o-succinylbenzoate synthase;


Pssm-ID: 235061 [Multi-domain]  Cd Length: 320  Bit Score: 42.31  E-value: 2.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489526369 170 QSYLDRGYDVVKMKIGAVPLDEDIRRIEAVLEVVGDGRRLAVDANGRFDLQTG---IAYAEAIKKYNLFWYEEVGDPLDY 246
Cdd:PRK02714 127 QTLWQQGYRTFKWKIGVDPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAkrwLQLCDRRLSGKIEFIEQPLPPDQF 206
                         90
                 ....*....|....*...
gi 489526369 247 ALQAELANHYELPMATGE 264
Cdd:PRK02714 207 DEMLQLSQDYQTPIALDE 224
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH