NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|489528686|ref|WP_003433423|]
View 

MULTISPECIES: DUF3509 domain-containing protein [Pseudomonas]

Protein Classification

DUF3509 domain-containing protein( domain architecture ID 10572250)

DUF3509 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF3509 pfam12021
Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. ...
 3-88 1.72e-31

Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 92 to 110 amino acids in length. This protein has two completely conserved residues (G and R) that may be functionally important.


:

Pssm-ID: 432267  Cd Length: 87  Bit Score: 105.96  E-value: 1.72e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489528686   3 NISLLLSEALAPYQASIGPAGSRGERLVTLKDKAGTcVIERAFSADQLSDKRQLTDVVDGLRRDLMVAEGRIEPCVIAAM 82
Cdd:pfam12021  1 PIQQLLDAAFPPYRVSTSIARPDGGILLTLRDEDGT-VIRRVVSAAQLNDPRQLEWVIDSIRRDLAIEAGELPPCVIAAL 79


                 ....*.
gi 489528686  83 RNAAIS 88
Cdd:pfam12021 80 QSQQRF 85
 
Name Accession Description Interval E-value
DUF3509 pfam12021
Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. ...
 3-88 1.72e-31

Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 92 to 110 amino acids in length. This protein has two completely conserved residues (G and R) that may be functionally important.


Pssm-ID: 432267  Cd Length: 87  Bit Score: 105.96  E-value: 1.72e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489528686   3 NISLLLSEALAPYQASIGPAGSRGERLVTLKDKAGTcVIERAFSADQLSDKRQLTDVVDGLRRDLMVAEGRIEPCVIAAM 82
Cdd:pfam12021  1 PIQQLLDAAFPPYRVSTSIARPDGGILLTLRDEDGT-VIRRVVSAAQLNDPRQLEWVIDSIRRDLAIEAGELPPCVIAAL 79


                 ....*.
gi 489528686  83 RNAAIS 88
Cdd:pfam12021 80 QSQQRF 85
 
Name Accession Description Interval E-value
DUF3509 pfam12021
Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. ...
 3-88 1.72e-31

Protein of unknown function (DUF3509); This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 92 to 110 amino acids in length. This protein has two completely conserved residues (G and R) that may be functionally important.


Pssm-ID: 432267  Cd Length: 87  Bit Score: 105.96  E-value: 1.72e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489528686   3 NISLLLSEALAPYQASIGPAGSRGERLVTLKDKAGTcVIERAFSADQLSDKRQLTDVVDGLRRDLMVAEGRIEPCVIAAM 82
Cdd:pfam12021  1 PIQQLLDAAFPPYRVSTSIARPDGGILLTLRDEDGT-VIRRVVSAAQLNDPRQLEWVIDSIRRDLAIEAGELPPCVIAAL 79


                 ....*.
gi 489528686  83 RNAAIS 88
Cdd:pfam12021 80 QSQQRF 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH