|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
102-537 |
6.79e-169 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 485.82 E-value: 6.79e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 102 KVIEDIIEHIDEVVVVFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLVrqglvEEPIILNMLKVKKKIYRNIVYPDGK 181
Cdd:COG3829 11 EELEAILDSLDDGIIVVDADGRITYVNRAAERILGLPREEVIGKNVTELI-----PNSPLLEVLKTGKPVTGVIQKTGGK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 182 LIAY--TAVPRWDsKGKLTGGVLTGRDISRVIKLESQIKYSDISE--DTEY-----ISQSKIMDNIKKVVKRAAASDSSI 252
Cdd:COG3829 86 GKTVivTAIPIFE-DGEVIGAVETFRDITELKRLERKLREEELERglSAKYtfddiIGKSPAMKELLELAKRVAKSDSTV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 253 FINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEEGSFTGAKKKGKKGLFEEANGGTIFLDEIGE 332
Cdd:COG3829 165 LILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFELADGGTLFLDEIGE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 333 LPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLYYRLSVIPVKIPPLRERKEDIVPLVN 412
Cdd:COG3829 245 MPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAE 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 413 YFLKLYNEKYNREV-EVSPKVIELLEEYSWPGNIRELKNIIERFVVLSAKNVIGEDEFNMLInldmidneTDDLSPIVVN 491
Cdd:COG3829 325 HFLEKFNKKYGKNIkGISPEALELLLAYDWPGNVRELENVIERAVVLSEGDVITPEHLPEYL--------LEEAEAASAA 396
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 489529837 492 GIMNLNDAYKIVDQIMISKAINKY-GSITKAAEVIGIYPSTIHRKIK 537
Cdd:COG3829 397 EEGSLKEALEEVEKELIEEALEKTgGNKSKAAKALGISRSTLYRKLK 443
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
206-537 |
3.59e-126 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 375.46 E-value: 3.59e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 206 DISRVIK--LESQIKYSDISEDTEYISQSKIMDNIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAI 283
Cdd:COG2204 109 ELLAAVEraLERRRLRRENAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAV 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 284 NCGAIPNELLESEFFGYEEGSFTGAKKKGKKgLFEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDV 363
Cdd:COG2204 189 NCAAIPEELLESELFGHEKGAFTGAVARRIG-KFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDV 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 364 RYISATNISHEDLRNNLKFRQDLYYRLSVIPVKIPPLRERKEDIVPLVNYFLKLYNEKYNREVEVSPKVIELLEEYSWPG 443
Cdd:COG2204 268 RVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVKLSPEALEALLAYDWPG 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 444 NIRELKNIIERFVVLSAKNVIGEDEfnmlinldmidnetddlspivvngimnLNDAYKIVDQIMISKAINKY-GSITKAA 522
Cdd:COG2204 348 NVRELENVIERAVILADGEVITAED---------------------------LPEALEEVERELIERALEETgGNVSRAA 400
|
330
....*....|....*
gi 489529837 523 EVIGIYPSTIHRKIK 537
Cdd:COG2204 401 ELLGISRRTLYRKLK 415
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
104-537 |
3.96e-115 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 352.66 E-value: 3.96e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 104 IEDIIEHIDEVVVVFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLVRQGlveepIILNMLKVKKKIyRNIVYP--DGK 181
Cdd:NF041552 136 LKHILDNIHEAVCVIDKEGIVILWNKSAEKLYGVKSEEIVGKPLEEFFPNA-----LLLKVLKTKKPI-ENVYHSpkEGS 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 182 LIAYTAVPRWdSKGKLTGGVLTGRDISRVIKLESQIK------------YSDISEDT--EYISQSKIMDNIKKVVKRAAA 247
Cdd:NF041552 210 YVIISAVPIF-INGEFIGVVSTDRDITEVKNLSKELEkakekleyleeeVKKISEDSfgKIIGKSKKIIKKIEIAKQVAK 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 248 SDSSIFINGESGVGKEIIARTIYKYSSRRDkPFIAINCGAIPNELLESEFFGYEEGSFTGAKKKGKKGLFEEANGGTIFL 327
Cdd:NF041552 289 TNSSVLITGESGTGKEVFARAIHQASGRKG-PFVPVNCSAIPEELFESEFFGYEEGAFTGALKKGKIGKFELANNGTLFL 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 328 DEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLYYRLSVIPVKIPPLRERKEDI 407
Cdd:NF041552 368 DEIGDMPLSMQAKLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFREDLYYRLNVVEIELPPLRERKEDI 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 408 VPLVNYFLKLYNEKYNREV-EVSPKVIELLEEYSWPGNIRELKNIIERFVVLSAKNVIGEDEFNMLINLDMIDNETDDls 486
Cdd:NF041552 448 PLLINYFLKEICKENNKEIpKIDKEVYDILQNYKWKGNIRELKNTIEHLVVLSKNGTITKDSIPEYILESVKKKEDEE-- 525
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 489529837 487 pivVNGIMNLNDAYKIVDQIMISKAINKY-GSITKAAEVIGIYPSTIHRKIK 537
Cdd:NF041552 526 ---GDYPLDLNKAVEKLEIDTIKKALEMSnGNKAKAAKLLNIPRSTLYYKLK 574
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
105-538 |
1.42e-107 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 334.56 E-value: 1.42e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 105 EDIIEHIDEVVVVFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLVRQGLVEEPiilnmlkvkkkiyrnivyPDGKLIA 184
Cdd:COG3284 219 PEFLGSLSEGLLAFDEDGRIVAANRAARRLLGLADAALLGRPLEELFGLDLEALP------------------DGARRAP 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 185 YTAVPRWDSKGKLTGGVLTGRDISRVIKleSQIKYSDISEDTEYI-SQSKIMDNIKKVVKRAAASDSSIFINGESGVGKE 263
Cdd:COG3284 281 ASPRPLRLRDGRRLGALLRLRPARRAAR--AAPAGAPAPAALAALaGGDPAMRRALRRARRLADRDIPVLILGETGTGKE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 264 IIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEEGSFTGAKKKGKKGLFEEANGGTIFLDEIGELPMQMQKKLLR 343
Cdd:COG3284 359 LFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAFTGARRKGRPGKIEQADGGTLFLDEIGDMPLALQARLLR 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 344 VIQENTITRIGGSKPIKIDVRYISATnisHEDLRNNLK---FRQDLYYRLSVIPVKIPPLRERkEDIVPLVNYFLKLYNE 420
Cdd:COG3284 439 VLQEREVTPLGGTKPIPVDVRLIAAT---HRDLRELVAagrFREDLYYRLNGLTLTLPPLRER-EDLPALIEHLLRELAA 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 421 KYnREVEVSPKVIELLEEYSWPGNIRELKNIIERFVVLSAKNVIGEDefnmliNL-DMIDNETDDLSPIVVNGIMNLNDA 499
Cdd:COG3284 515 GR-GPLRLSPEALALLAAYPWPGNVRELRNVLRTALALADGGVITVE------DLpDELRAELAAAAPAAAAPLTSLEEA 587
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 489529837 500 ykivDQIMISKAINKY-GSITKAAEVIGIYPSTIHRKIKS 538
Cdd:COG3284 588 ----ERDAILRALRACgGNVSAAARALGISRSTLYRKLKR 623
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
220-533 |
1.15e-90 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 285.10 E-value: 1.15e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 220 SDISEDTEYISQSKIMDNIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFG 299
Cdd:TIGR02915 133 LGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFG 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 300 YEEGSFTGAKKKGKKGLfEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATNISHEDLRNN 379
Cdd:TIGR02915 213 YEKGAFTGAVKQTLGKI-EYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAE 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 380 LKFRQDLYYRLSVIPVKIPPLRERKEDIVPLVNYFLKLYNEKYNREVE-VSPKVIELLEEYSWPGNIRELKNIIERFVVL 458
Cdd:TIGR02915 292 GTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKgFTDDALRALEAHAWPGNVRELENKVKRAVIM 371
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489529837 459 SAKNVIGEDEfnmlINLDMIDNETDDLSpivvngiMNLNDAYKIVDQIMISKAINKY-GSITKAAEVIGIYPSTIH 533
Cdd:TIGR02915 372 AEGNQITAED----LGLDARERAETPLE-------VNLREVRERAEREAVRKAIARVdGNIARAAELLGITRPTLY 436
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
229-395 |
2.68e-89 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 271.58 E-value: 2.68e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 229 ISQSKIMDNIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEEGSFTGA 308
Cdd:pfam00158 2 IGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 309 KKKGKKgLFEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLYY 388
Cdd:pfam00158 82 DSDRKG-LFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*..
gi 489529837 389 RLSVIPV 395
Cdd:pfam00158 161 RLNVIPI 167
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
229-469 |
5.81e-89 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 283.53 E-value: 5.81e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 229 ISQSKIMDNIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEEGSFTGA 308
Cdd:TIGR01817 199 IGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGA 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 309 KKKGKKGlFEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLYY 388
Cdd:TIGR01817 279 IAQRKGR-FELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 389 RLSVIPVKIPPLRERKEDIVPLVNYFLKLYNEKYNREVEVSPKVIELLEEYSWPGNIRELKNIIERFVVLSAKNVIGEDE 468
Cdd:TIGR01817 358 RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLSRSGTITRSD 437
|
.
gi 489529837 469 F 469
Cdd:TIGR01817 438 F 438
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
229-527 |
5.53e-88 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 278.66 E-value: 5.53e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 229 ISQSKIMDNIKKVVKRAAASDSSIFINGESGVGKEIIARTIYkYSSRRDK-PFIAINCGAIPNELLESEFFGYEEGSFTG 307
Cdd:PRK11361 146 LTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIH-YNSRRAKgPFIKVNCAALPESLLESELFGHEKGAFTG 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 308 AKKKGKKgLFEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLY 387
Cdd:PRK11361 225 AQTLRQG-LFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLF 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 388 YRLSVIPVKIPPLRERKEDIVPLVNYFLKLYNEKYNREV-EVSPKVIELLEEYSWPGNIRELKNIIERFVVLSAKNVIGE 466
Cdd:PRK11361 304 YRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIiDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFS 383
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489529837 467 DEFNMLINLDMIDNETDDLSPivvNGIMNLNDAYKIVDQIMISKAINKY-GSITKAAEVIGI 527
Cdd:PRK11361 384 EDLPPQIRQPVCNAGEVKTAP---VGERNLKEEIKRVEKRIIMEVLEQQeGNRTRTALMLGI 442
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
223-539 |
7.88e-88 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 278.55 E-value: 7.88e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 223 SEDTEYISQSKIMDNIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEE 302
Cdd:TIGR01818 131 EDSAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEK 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 303 GSFTGAKKKGKKGlFEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATnisHEDLRNNL-- 380
Cdd:TIGR01818 211 GAFTGANTRRQGR-FEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAAT---HQNLEALVrq 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 381 -KFRQDLYYRLSVIPVKIPPLRERKEDIVPLVNYFLKLYNEKYNREVE-VSPKVIELLEEYSWPGNIRELKNIIERFVVL 458
Cdd:TIGR01818 287 gKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKlLDPEALERLKQLRWPGNVRQLENLCRWLTVM 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 459 SAKNVIGedefnmlinLDMIDNETDDLSPIVVNGIMN------------------------LNDAYKIVDQIMISKAIN- 513
Cdd:TIGR01818 367 ASGDEVL---------VSDLPAELALTGRPASAPDSDgqdswdealeawakqalsrgeqglLDRALPEFERPLLEAALQh 437
|
330 340
....*....|....*....|....*.
gi 489529837 514 KYGSITKAAEVIGIYPSTIHRKIKSG 539
Cdd:TIGR01818 438 TRGHKQEAAALLGWGRNTLTRKLKEL 463
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
117-464 |
1.43e-87 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 279.38 E-value: 1.43e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 117 VFNKD--GVIEKMNTVSDEILPFKRTEVLGRNITDLVRQG-----LVEEPIILNMLKVKkkiYRNIVYpdgkLIAYTAVP 189
Cdd:COG3283 93 VFSIDlkGKIELANPAALSLLGLSEEELIGQPLSELLKGFnfsrwLESNEPRPQSERVV---INGQDY----LADILPIY 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 190 RWDSKGK--LTGGVLTGRDISRVIKLESQIKYSDISEDTEYISQSKIMdniKKVVKRA---AASDSSIFINGESGVGKEI 264
Cdd:COG3283 166 LPDEEGKsiLAGAVVTLKSAARLGEQLQALQVNDDSGFDHIVASSPKM---RQVIRQAkkmAMLDAPLLIQGETGTGKEL 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 265 IARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEEGSFtGAKKKGKKGLFEEANGGTIFLDEIGELPMQMQKKLLRV 344
Cdd:COG3283 243 LARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAF-GNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRF 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 345 IQENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLYYRLSVIPVKIPPLRERKEDIVPLVNYFLKLYNEKYNR 424
Cdd:COG3283 322 LQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGR 401
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 489529837 425 EV-EVSPKVIELLEEYSWPGNIRELKNIIERFVVLSAKNVI 464
Cdd:COG3283 402 PRpRLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLEGDEL 442
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
224-534 |
4.42e-86 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 275.13 E-value: 4.42e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 224 EDTEYISQSKIMDNIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEEG 303
Cdd:PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKG 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 304 SFTGAKKKGKKGlFEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATNishEDLRNNLK-- 381
Cdd:PRK05022 265 AFTGAISNRSGK-FELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATN---RDLREEVRag 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 382 -FRQDLYYRLSVIPVKIPPLRERKEDIVPLVNYFLKLYNEKYN-REVEVSPKVIELLEEYSWPGNIRELKNIIERFVVLS 459
Cdd:PRK05022 341 rFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGlRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLA 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 460 AKN------VIGEDEFNMLINLDMIDNETDDLSPIVVNGimNLNDAykiVDQI---MISKAINKY-GSITKAAEVIGIYP 529
Cdd:PRK05022 421 RARgagrivTLEAQHLDLPAEVALPPPEAAAAPAAVVSQ--NLREA---TEAFqrqLIRQALAQHqGNWAAAARALELDR 495
|
....*
gi 489529837 530 STIHR 534
Cdd:PRK05022 496 ANLHR 500
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
229-460 |
6.92e-80 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 259.79 E-value: 6.92e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 229 ISQSKIMDNIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEEGSFTGA 308
Cdd:TIGR02329 215 LGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 309 KKKGKKGLFEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLYY 388
Cdd:TIGR02329 295 RRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY 374
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489529837 389 RLSVIPVKIPPLRERKEDIVPLVNYFLKLYNEKYN-----REVEVSPKVIELLEEYSWPGNIRELKNIIERFVV-LSA 460
Cdd:TIGR02329 375 RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRlpdseAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALeLSA 452
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
229-536 |
3.31e-78 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 252.64 E-value: 3.31e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 229 ISQSKIMDNIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEEGSFTGA 308
Cdd:PRK10365 142 VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGA 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 309 KKKGKKGlFEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATnisHEDLRNNL---KFRQD 385
Cdd:PRK10365 222 DKRREGR-FVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAAT---HRDLAAEVnagRFRQD 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 386 LYYRLSVIPVKIPPLRERKEDIVPLVNYFLKLYNEKYNREVE-VSPKVIELLEEYSWPGNIRELKNIIERFVVLSAKNVI 464
Cdd:PRK10365 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKgFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYI 377
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489529837 465 GEDEFNMLI-NLDMIDNETDDLSPIVVngimnlndaykiVDQIMISKAINKY-GSITKAAEVIGIYPSTIHRKI 536
Cdd:PRK10365 378 SERELPLAIaSTPIPLGQSQDIQPLVE------------VEKEVILAALEKTgGNKTEAARQLGITRKTLLAKL 439
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
231-454 |
1.55e-76 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 251.18 E-value: 1.55e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 231 QSKIMDNIKKVVKRAAASDSSIFINGESGVGKEIIARTIYK--------YSSRRDKPFIAINCGAIPNELLESEFFGYEE 302
Cdd:PRK15424 224 QSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHReyfarhdaRQGKKSHPFVAVNCGAIAESLLEAELFGYEE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 303 GSFTGAKKKGKKGLFEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATnisHEDLRNNLK- 381
Cdd:PRK15424 304 GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISAT---HCDLEEDVRq 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 382 --FRQDLYYRLSVIPVKIPPLRERKEDIVPLVNYFLKlyNEKYNREVEVSPKVI-------ELLEEYSWPGNIRELKNII 452
Cdd:PRK15424 381 grFRRDLFYRLSILRLQLPPLRERVADILPLAESFLK--QSLAALSAPFSAALRqglqqceTLLLHYDWPGNVRELRNLM 458
|
..
gi 489529837 453 ER 454
Cdd:PRK15424 459 ER 460
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
213-466 |
7.27e-76 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 246.67 E-value: 7.27e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 213 LESQIKYSDISEDTEYISQSKIMDNIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNEL 292
Cdd:PRK15115 121 LEQSAPATDERWREAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 293 LESEFFGYEEGSFTGAkKKGKKGLFEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATnis 372
Cdd:PRK15115 201 LESELFGHARGAFTGA-VSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISAT--- 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 373 HEDLRNNL---KFRQDLYYRLSVIPVKIPPLRERKEDIVPLVNYFLKLYNEKYNREVE-VSPKVIELLEEYSWPGNIREL 448
Cdd:PRK15115 277 HRDLPKAMargEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRaFSTDAMKRLMTASWPGNVRQL 356
|
250
....*....|....*...
gi 489529837 449 KNIIERFVVLSAKNVIGE 466
Cdd:PRK15115 357 VNVIEQCVALTSSPVISD 374
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
226-537 |
1.02e-72 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 239.39 E-value: 1.02e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 226 TEYISQSKIMDNIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEEGSF 305
Cdd:PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAF 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 306 TGAKKKGKKGlFEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATnisHEDLRNNL---KF 382
Cdd:PRK10923 218 TGANTIRQGR-FEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAAT---HQNLEQRVqegKF 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 383 RQDLYYRLSVIPVKIPPLRERKEDIVPLVNYFLKlyneKYNREVEVSPKVIE-----LLEEYSWPGNIRELKNIIERFVV 457
Cdd:PRK10923 294 REDLFHRLNVIRVHLPPLRERREDIPRLARHFLQ----VAARELGVEAKLLHpeteaALTRLAWPGNVRQLENTCRWLTV 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 458 LSA-KNVIGEDEFNMLINLDmIDNETDDLSP-------------IVVNGIMN-LNDAYKIVDQIMISKAI-NKYGSITKA 521
Cdd:PRK10923 370 MAAgQEVLIQDLPGELFEST-VPESTSQMQPdswatllaqwadrALRSGHQNlLSEAQPELERTLLTTALrHTQGHKQEA 448
|
330
....*....|....*.
gi 489529837 522 AEVIGIYPSTIHRKIK 537
Cdd:PRK10923 449 ARLLGWGRNTLTRKLK 464
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
251-537 |
1.76e-72 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 234.36 E-value: 1.76e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 251 SIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESeffgyeegsftgakkkgkkglfeeanggtifldei 330
Cdd:COG3604 117 AVAILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES----------------------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 331 gelpmqmqkkllrvIQENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLYYRLSVIPVKIPPLRERKEDIVPL 410
Cdd:COG3604 162 --------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPPLRERREDIPLL 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 411 VNYFLKLYNEKYNREVE-VSPKVIELLEEYSWPGNIRELKNIIERFVVLSAKNVIGEDEFNMLINLDMIDNETDdlspiv 489
Cdd:COG3604 228 AEHFLEKFSRRLGKPILrLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDLAPGSREALEEVERE------ 301
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 489529837 490 vngimnlndaykivdqiMISKAINKY-GSITKAAEVIGIYPSTIHRKIK 537
Cdd:COG3604 302 -----------------HILEALERTgGNIAGAARLLGLTPSTLRSRMK 333
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
242-456 |
8.37e-72 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 232.57 E-value: 8.37e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 242 VKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEEGSFTGAKKKGKKgLFEEAN 321
Cdd:TIGR02974 15 VSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQG-RFERAD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 322 GGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLYYRLSVIPVKIPPLR 401
Cdd:TIGR02974 94 GGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLR 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489529837 402 ERKEDIVPLVNYFLKLYNEKYNRE--VEVSPKVIELLEEYSWPGNIRELKNIIERFV 456
Cdd:TIGR02974 174 ERQEDIMLLAEHFAIRMARELGLPlfPGFTPQAREQLLEYHWPGNVRELKNVVERSV 230
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
213-464 |
5.03e-71 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 240.12 E-value: 5.03e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 213 LESQIKYSDiSEDTEYISQSKIMDNIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNEL 292
Cdd:PRK15429 364 LTEQLNNVD-SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 293 LESEFFGYEEGSFTGAKKKGKKGlFEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATNIS 372
Cdd:PRK15429 443 LESDLFGHERGAFTGASAQRIGR-FELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 373 HEDLRNNLKFRQDLYYRLSVIPVKIPPLRERKEDIVPLVNYFLKLYNEKYNREVEVSP-KVIELLEEYSWPGNIRELKNI 451
Cdd:PRK15429 522 LKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPaETLRTLSNMEWPGNVRELENV 601
|
250
....*....|...
gi 489529837 452 IERFVVLSAKNVI 464
Cdd:PRK15429 602 IERAVLLTRGNVL 614
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
242-456 |
7.01e-64 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 211.45 E-value: 7.01e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 242 VKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEEGSFTGAKKKGKKGlFEEAN 321
Cdd:PRK11608 22 VSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGR-FERAD 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 322 GGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLYYRLSVIPVKIPPLR 401
Cdd:PRK11608 101 GGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLR 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489529837 402 ERKEDIVPLVNYFLKlyneKYNREVEV------SPKVIELLEEYSWPGNIRELKNIIERFV 456
Cdd:PRK11608 181 ERQSDIMLMAEHFAI----QMCRELGLplfpgfTERARETLLNYRWPGNIRELKNVVERSV 237
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
192-454 |
4.21e-63 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 215.32 E-value: 4.21e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 192 DSKGK--LTGGVLTGRDISRVIKLESQIKYSDISEDTEYISQSKIMdniKKVVKRA---AASDSSIFINGESGVGKEIIA 266
Cdd:PRK10820 168 DENDQhvLVGAVVMLRSTARMGRQLQNLAVNDDSAFSQIVAVSPKM---RQVVEQArklAMLDAPLLITGDTGTGKDLLA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 267 RTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEEGSFTGAKKKGKKgLFEEANGGTIFLDEIGELPMQMQKKLLRVIQ 346
Cdd:PRK10820 245 YACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKG-FFEQANGGSVLLDEIGEMSPRMQAKLLRFLN 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 347 ENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLYYRLSVIPVKIPPLRERKEDIVPLVNYFLKLY-NEKYNRE 425
Cdd:PRK10820 324 DGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFaDEQGVPR 403
|
250 260
....*....|....*....|....*....
gi 489529837 426 VEVSPKVIELLEEYSWPGNIRELKNIIER 454
Cdd:PRK10820 404 PKLAADLNTVLTRYGWPGNVRQLKNAIYR 432
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
107-537 |
1.62e-60 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 211.08 E-value: 1.62e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 107 IIEHIDEVVVVFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLvrqgLVEEPIILNMLKVKKKIYRnivypdgKLIAYt 186
Cdd:PRK11388 208 LLESMDDGVIAWDEQGNLQFLNAQAARLLRLDATASQGRAITEL----LTLPAVLQQAIKQAHPLKH-------VEVTF- 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 187 avprwDSKGKLTGGVLTGRDISRV-----------IKLESQIKYSDISEDTEYISQ----SKIMDNIKKVVKRAAASDSS 251
Cdd:PRK11388 276 -----ESQGQFIDAVITLKPIIEGqgtsfilllhpVEQMRQLMTSQLGKVSHTFDHmpqdSPQMRRLIHFGRQAAKSSFP 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 252 IFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGyeegSFTGAKKKGKKGLFEEANGGTIFLDEIG 331
Cdd:PRK11388 351 VLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG----SDRTDSENGRLSKFELAHGGTLFLEKVE 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 332 ELPMQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLYYRLSVIPVKIPPLRERKEDIVPLV 411
Cdd:PRK11388 427 YLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALV 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 412 NYFLKLYNEKYNREVEVSPKVIELLEEYSWPGNIRELKNIIERFVVLSAKNVIGEDEFNMLINLDMIDNETDDlSPIVVN 491
Cdd:PRK11388 507 NNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNGRIRLSDLPEHLFTEQATDDVSA-TRLSTS 585
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 489529837 492 giMNLNDAYKivdQIMISKAINKYGSITKAAEVIGIYPSTIHRKIK 537
Cdd:PRK11388 586 --LSLAELEK---EAIINAAQVCGGRIQEMAALLGIGRTTLWRKMK 626
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
252-510 |
1.38e-25 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 111.35 E-value: 1.38e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 252 IFINGESGVGKEIIARTIYKYSSR-----RDKPFIAINCGAIPN--ELLESEFFGYEEGSFTGAKKKGKKgLFEEANGGT 324
Cdd:COG1221 133 TLILGPTGVGKSFFAELMYEYAIEigvlpEDAPFVVFNCADYANnpQLLMSQLFGYVKGAFTGADKDKEG-LIEKADGGI 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 325 IFLDEIGELPMQMQKKLLRVIQENTITRIGGS-KPIKIDVRYISATNishEDLRNNL--KFRQdlyyRLSVIpVKIPPLR 401
Cdd:COG1221 212 LFLDEVHRLPPEGQEMLFTFMDKGIYRRLGETeKTRKANVRIIFATT---EDPESSLlkTFLR----RIPMV-IKLPSLE 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 402 ER--KEDIvPLVNYFLKLYNEKYNREVEVSPKVIELLEEYSWPGNIRELKNIIeRFVVLSAKNvigedeFNMLINLDMID 479
Cdd:COG1221 284 ERslEERL-ELIKHFFKEEAKRLNKPIKVSKEVLKALLLYDCPGNIGQLKSDI-QLACAKAFL------NYITNKKEEIE 355
|
250 260 270
....*....|....*....|....*....|.
gi 489529837 480 NETDDLSPIVVNGIMNLNDAYKIVDQIMISK 510
Cdd:COG1221 356 ITLSDLPENVKKGLLKLKENREELDKLSEYL 386
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
235-399 |
3.96e-19 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 84.12 E-value: 3.96e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 235 MDNIKKVVKRAA--ASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESEFFGYEEgsftgakKKG 312
Cdd:cd00009 3 QEEAIEALREALelPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFL-------VRL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 313 KKGLFEEANGGTIFLDEIGELPMQMQKKLLRVIQENTITRIGGSkpikiDVRYISATNishedLRNNLKFRQDLYYRLSV 392
Cdd:cd00009 76 LFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRE-----NVRVIGATN-----RPLLGDLDRALYDRLDI 145
|
....*..
gi 489529837 393 IpVKIPP 399
Cdd:cd00009 146 R-IVIPL 151
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
232-400 |
8.46e-15 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 71.22 E-value: 8.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 232 SKIMDNIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESeffgyeegsftgakkk 311
Cdd:pfam14532 4 SAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELLEQ---------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 312 gkkglfeeANGGTIFLDEIGELPMQMQKKLLRVIQENTitriggskpiKIDVRYISATNISHEDLRNNLKFRQDLYYRLS 391
Cdd:pfam14532 68 --------AKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYFELS 129
|
....*....
gi 489529837 392 VIPVKIPPL 400
Cdd:pfam14532 130 ALRLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
251-383 |
4.42e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 52.38 E-value: 4.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 251 SIFINGESGVGKEIIARTIYKYSSRRDKPFIAINCGAIPNELLESE----FFGYEEGSFTGAKKKGKKGLFEEANGGTIF 326
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLlliiVGGKKASGSGELRLRLALALARKLKPDVLI 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 489529837 327 LDEIGELPMQMQKKLLRVIQEntiTRIGGSKPIKIDVRYISATNISHEDLRNNLKFR 383
Cdd:smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDEKDLGPALLRRR 137
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
105-217 |
9.25e-08 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 54.08 E-value: 9.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 105 EDIIEHIDEVVVVFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLVRQGLVEEPIILNMLKVKKKIYRN---IVYPDGK 181
Cdd:COG3852 10 RAILDSLPDAVIVLDADGRITYVNPAAERLLGLSAEELLGRPLAELFPEDSPLRELLERALAEGQPVTERevtLRRKDGE 89
|
90 100 110
....*....|....*....|....*....|....*...
gi 489529837 182 --LIAYTAVPRWDSKGKlTGGVLTGRDISRVIKLESQI 217
Cdd:COG3852 90 erPVDVSVSPLRDAEGE-GGVLLVLRDITERKRLEREL 126
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
105-220 |
1.72e-07 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 52.72 E-value: 1.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 105 EDIIEHIDEVVVVFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLVRQGLVEEPIILNMLKVKKKIYRNIVY----PDG 180
Cdd:COG2202 14 RALVESSPDAIIITDLDGRILYVNPAFERLTGYSAEELLGKTLRDLLPPEDDDEFLELLRAALAGGGVWRGELrnrrKDG 93
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 489529837 181 KLI--AYTAVPRWDSKGKLTGGVLTGRDISRVIKLESQIKYS 220
Cdd:COG2202 94 SLFwvELSISPVRDEDGEITGFVGIARDITERKRAEEALRES 135
|
|
| KinE |
COG5809 |
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome ... |
8-221 |
2.63e-05 |
|
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 444511 [Multi-domain] Cd Length: 489 Bit Score: 46.89 E-value: 2.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 8 LIEHVENPAILCKESGEIIYCNHLIDSIF--SFLDIKKPRNINELDSNFDKT--EILTDSKKKIAFREL--RMTA----- 76
Cdd:COG5809 20 LFENAPDAILILDLEGKILKVNPAAERIFgyTEDELLGTNILDFLHPDDEKElrEILKLLKEGESRDELefELRHkngkr 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 77 --------HIYNMKDNNNENNIVY-------LFEKSLI-SDKVIEDIIEHIDEVVVVFNKDGVIEKMNTVSDEILPFKRT 140
Cdd:COG5809 100 lefssklsPIFDQNGDIEGMLAISrditerkRMEEALReSEEKFRLIFNHSPDGIIVTDLDGRIIYANPAACKLLGISIE 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 141 EVLGRNITDLVR---QGLVEEPIilNMLKVKKKIYRN---IVYPDGK--LIAYTAVPrWDSKGKLTGGVLTGRDISRVIK 212
Cdd:COG5809 180 ELIGKSILELIHsddQENVAAFI--SQLLKDGGIAQGevrFWTKDGRwrLLEASGAP-IKKNGEVDGIVIIFRDITERKK 256
|
....*....
gi 489529837 213 LESQIKYSD 221
Cdd:COG5809 257 LEELLRKSE 265
|
|
| PAS_9 |
pfam13426 |
PAS domain; This domain is found in many signalling proteins in which it functions as a sensor ... |
121-208 |
2.29e-04 |
|
PAS domain; This domain is found in many signalling proteins in which it functions as a sensor domain. It recognizes FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 463873 [Multi-domain] Cd Length: 93 Bit Score: 40.14 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 121 DGVIEKMNTVSDEILPFKRTEVLGRNITDLVRQGLVEEPI--ILNMLKVKKKIYRNIVYPDGKLI--AYTAVPRWDSKGK 196
Cdd:pfam13426 1 DGRIIYVNDAALRLLGYTREELLGKSITDLFAEPEDSERLreALREGKAVREFEVVLYRKDGEPFpvLVSLAPIRDDGGE 80
|
90
....*....|..
gi 489529837 197 LTGGVLTGRDIS 208
Cdd:pfam13426 81 LVGIIAILRDIT 92
|
|
| sensory_box |
TIGR00229 |
PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain ... |
107-214 |
2.32e-04 |
|
PAS domain S-box; The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. [Regulatory functions, Small molecule interactions]
Pssm-ID: 272971 [Multi-domain] Cd Length: 124 Bit Score: 41.12 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 107 IIEHIDEVVVVFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLVRQGLVEE--PIILNMLKVKKKIY---RNIVYPDGK 181
Cdd:TIGR00229 8 IFESSPDAIIVIDLEGNILYVNPAFEEIFGYSAEELIGRNVLELIPEEDREEvrERIERRLEGEPEPVseeRRVRRKDGS 87
|
90 100 110
....*....|....*....|....*....|....
gi 489529837 182 LI-AYTAVPRWDSKGKLTGGVLTGRDISRVIKLE 214
Cdd:TIGR00229 88 EIwVEVSVSPIRTNGGELGVVGIVRDITERKEAE 121
|
|
| PRK11360 |
PRK11360 |
two-component system sensor histidine kinase AtoS; |
105-217 |
3.60e-04 |
|
two-component system sensor histidine kinase AtoS;
Pssm-ID: 236901 [Multi-domain] Cd Length: 607 Bit Score: 43.42 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 105 EDIIEHIDEVVVVFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDL--VRQGLVEepIILNMLKVKKKIY-RNIVYPDG- 180
Cdd:PRK11360 265 ELILESIADGVIAIDRQGKITTMNPAAEVITGLQRHELVGKPYSELfpPNTPFAS--PLLDTLEHGTEHVdLEISFPGRd 342
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 489529837 181 ---KLIAYTAVPRwDSKGKLTGGVLTGRDISRVIKLESQI 217
Cdd:PRK11360 343 rtiELSVSTSLLH-NTHGEMIGALVIFSDLTERKRLQRRV 381
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
104-214 |
5.11e-04 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 42.64 E-value: 5.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 104 IEDIIEHIDEVVVVFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLVRQGLVEEPIILNMLKVKKKIYRniVYPDGKLI 183
Cdd:COG5000 92 LETILENLPAGVIVLDADGRITLANPAAERLLGIPLEELIGKPLEELLPELDLAELLREALERGWQEEIE--LTRDGRRT 169
|
90 100 110
....*....|....*....|....*....|.
gi 489529837 184 AYTAVPRWDSKGKltggVLTGRDISRVIKLE 214
Cdd:COG5000 170 LLVRASPLRDDGY----VIVFDDITELLRAE 196
|
|
| PAS |
pfam00989 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
107-207 |
1.01e-03 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395786 [Multi-domain] Cd Length: 113 Bit Score: 38.94 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 107 IIEHIDEVVVVFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLV----RQGLVEepIILNMLKVKKK---IYRNIVYPD 179
Cdd:pfam00989 6 ILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIpeedDAEVAE--LLRQALLQGEEsrgFEVSFRVPD 83
|
90 100 110
....*....|....*....|....*....|
gi 489529837 180 GK--LIAYTAVPRWDSKGKLTGGVLTGRDI 207
Cdd:pfam00989 84 GRprHVEVRASPVRDAGGEILGFLGVLRDI 113
|
|
| PAS_4 |
pfam08448 |
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined ... |
109-208 |
1.26e-03 |
|
PAS fold; The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain is associated to signalling systems and works as a signal sensor domain. It recognizes differently substituted aromatic hydrocarbons, oxygen, different dodecanoic acids, autoinducers, 3,5-dimethyl-pyrazin-2-ol and N-alanyl-aminoacetone (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 312075 [Multi-domain] Cd Length: 110 Bit Score: 38.55 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 109 EHIDEVVVVFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLVRQGLVEEpIILNMLKV---KKKIYRNIVYPDGKLIAY 185
Cdd:pfam08448 2 DSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGKTLAELLPPEDAAR-LERALRRAlegEEPIDFLEELLLNGEERH 80
|
90 100
....*....|....*....|....*.
gi 489529837 186 ---TAVPRWDSKGKLTGGVLTGRDIS 208
Cdd:pfam08448 81 yelRLTPLRDPDGEVIGVLVISRDIT 106
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
503-537 |
1.65e-03 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 36.22 E-value: 1.65e-03
10 20 30
....*....|....*....|....*....|....*.
gi 489529837 503 VDQIMISKAINKY-GSITKAAEVIGIYPSTIHRKIK 537
Cdd:pfam02954 4 VEKELIEAALERTgGNKSKAARLLGISRRTLYRKLK 39
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
105-217 |
8.86e-03 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 38.08 E-value: 8.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489529837 105 EDIIEHIDEVVVVFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLVRQGLVEE--PIILNMLKVKKKIYR-NIVYPDGK 181
Cdd:COG2202 140 RLLVENAPDGIFVLDLDGRILYVNPAAEELLGYSPEELLGKSLLDLLHPEDRERllELLRRLLEGGRESYElELRLKDGD 219
|
90 100 110
....*....|....*....|....*....|....*....
gi 489529837 182 LIAY---TAVPRWDSKGKLTGGVLTGRDISRVIKLESQI 217
Cdd:COG2202 220 GRWVwveASAVPLRDGGEVIGVLGIVRDITERKRAEEAL 258
|
|
| |
