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Conserved domains on  [gi|489579424|ref|WP_003483870|]
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MULTISPECIES: 50S ribosomal protein L32 [Xanthomonas]

Protein Classification

large ribosomal subunit protein bL32( domain architecture ID 10001226)

large ribosomal subunit protein bL32, also called 50S ribosomal protein L32, is a component of the ribosomal large subunit

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RpmF COG0333
Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 ...
2-56 4.03e-23

Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440102  Cd Length: 56  Bit Score: 82.07  E-value: 4.03e-23
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 489579424  2 AVQKSRVTPSRRGQRRSHDALTAKQLSTDPTSGEIHLRHHITA-DGYYRGKKVIAT 56
Cdd:COG0333   1 AVPKRKTSKSRRRKRRSHDKLTAPALVVCPNCGEPKLPHRVCPsCGYYKGRQVIEV 56
 
Name Accession Description Interval E-value
RpmF COG0333
Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 ...
2-56 4.03e-23

Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440102  Cd Length: 56  Bit Score: 82.07  E-value: 4.03e-23
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 489579424  2 AVQKSRVTPSRRGQRRSHDALTAKQLSTDPTSGEIHLRHHITA-DGYYRGKKVIAT 56
Cdd:COG0333   1 AVPKRKTSKSRRRKRRSHDKLTAPALVVCPNCGEPKLPHRVCPsCGYYKGRQVIEV 56
Ribosomal_L32p pfam01783
Ribosomal L32p protein family;
2-55 1.54e-18

Ribosomal L32p protein family;


Pssm-ID: 426430  Cd Length: 56  Bit Score: 70.70  E-value: 1.54e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489579424   2 AVQKSRVTPSRRGQRRSHDALTAKQLSTDPTSGEIHLRHHITAD-GYYRGKKVIA 55
Cdd:pfam01783  1 AVPKRKTSKSRRRKRRAHWKLKAPNLVECPNCGELKLPHRVCPScGYYKGREVLE 55
rpmF_bact TIGR01031
ribosomal protein L32; This protein describes bacterial ribosomal protein L32. The noise ...
3-55 4.76e-13

ribosomal protein L32; This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273404  Cd Length: 55  Bit Score: 56.96  E-value: 4.76e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489579424   3 VQKSRVTPSRRGQRRSHDA-LTAKQLSTDPTSGEIHLRHHIT-ADGYYRGKKVIA 55
Cdd:TIGR01031  1 VPKRKTSKSRKRKRRSHDAkLTAPTLVVCPNCGEFKLPHRVCpSCGYYKGRQVLE 55
ACS cd05966
Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme); ...
42-60 3.66e-03

Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme); Acetyl-CoA synthetase (ACS, EC 6.2.1.1, acetate#CoA ligase or acetate:CoA ligase (AMP-forming)) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation.


Pssm-ID: 341270 [Multi-domain]  Cd Length: 608  Bit Score: 33.30  E-value: 3.66e-03
                         10
                 ....*....|....*....
gi 489579424  42 ITADGYYRGKKVIATKSSA 60
Cdd:cd05966  161 ITADGGYRGGKVIPLKEIV 179
 
Name Accession Description Interval E-value
RpmF COG0333
Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 ...
2-56 4.03e-23

Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L32 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440102  Cd Length: 56  Bit Score: 82.07  E-value: 4.03e-23
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 489579424  2 AVQKSRVTPSRRGQRRSHDALTAKQLSTDPTSGEIHLRHHITA-DGYYRGKKVIAT 56
Cdd:COG0333   1 AVPKRKTSKSRRRKRRSHDKLTAPALVVCPNCGEPKLPHRVCPsCGYYKGRQVIEV 56
Ribosomal_L32p pfam01783
Ribosomal L32p protein family;
2-55 1.54e-18

Ribosomal L32p protein family;


Pssm-ID: 426430  Cd Length: 56  Bit Score: 70.70  E-value: 1.54e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489579424   2 AVQKSRVTPSRRGQRRSHDALTAKQLSTDPTSGEIHLRHHITAD-GYYRGKKVIA 55
Cdd:pfam01783  1 AVPKRKTSKSRRRKRRAHWKLKAPNLVECPNCGELKLPHRVCPScGYYKGREVLE 55
rpmF_bact TIGR01031
ribosomal protein L32; This protein describes bacterial ribosomal protein L32. The noise ...
3-55 4.76e-13

ribosomal protein L32; This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273404  Cd Length: 55  Bit Score: 56.96  E-value: 4.76e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489579424   3 VQKSRVTPSRRGQRRSHDA-LTAKQLSTDPTSGEIHLRHHIT-ADGYYRGKKVIA 55
Cdd:TIGR01031  1 VPKRKTSKSRKRKRRSHDAkLTAPTLVVCPNCGEFKLPHRVCpSCGYYKGRQVLE 55
ACS cd05966
Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme); ...
42-60 3.66e-03

Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme); Acetyl-CoA synthetase (ACS, EC 6.2.1.1, acetate#CoA ligase or acetate:CoA ligase (AMP-forming)) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation.


Pssm-ID: 341270 [Multi-domain]  Cd Length: 608  Bit Score: 33.30  E-value: 3.66e-03
                         10
                 ....*....|....*....
gi 489579424  42 ITADGYYRGKKVIATKSSA 60
Cdd:cd05966  161 ITADGGYRGGKVIPLKEIV 179
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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