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Conserved domains on  [gi|489610457|ref|WP_003514898|]
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LysM peptidoglycan-binding domain-containing protein [Acetivibrio thermocellus]

Protein Classification

muramidase family protein( domain architecture ID 13291719)

muramidase family protein similar to Enterococcus hirae muramidase hydrolyzes the same bond as hen egg-white lysozyme; it is synthesized as a zymogen and requires protease activation

CATH:  3.10.350.10
Gene Ontology:  GO:0097367
PubMed:  18430080|24652063
SCOP:  4000905

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LysM COG1388
LysM repeat [Cell wall/membrane/envelope biogenesis];
208-256 2.81e-16

LysM repeat [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 440998 [Multi-domain]  Cd Length: 156  Bit Score: 75.90  E-value: 2.81e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 489610457 208 TYTSYTVQKGDTAWSIAEKFGISMYELMEANNINSSTvLNIGQKLKIPV 256
Cdd:COG1388  108 SPVTYTVKKGDTLWSIARRYGVSVEELKRWNGLSSDT-IRPGQKLKIPA 155
PRK06347 super family cl32140
1,4-beta-N-acetylmuramoylhydrolase;
31-254 1.13e-15

1,4-beta-N-acetylmuramoylhydrolase;


The actual alignment was detected with superfamily member PRK06347:

Pssm-ID: 180536 [Multi-domain]  Cd Length: 592  Bit Score: 78.97  E-value: 1.13e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457  31 YKVQSGDTFWKIGQKYNISTAALLKANNANENTVlYPGQTIVLPIKDES--------------------------VYIVQ 84
Cdd:PRK06347 333 YTVVKGDSLWRIANNHKVTVANLKAWNNLKSDFI-YPGQKLKVSAGSTTsdtntskpstgtstskpstgtstnakVYTVV 411

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457  85 SGDTYWNISQKYGINFKELLALNNAnENSMLNVGDKVILPA--TAN-------------------------YTVQKGDTY 137
Cdd:PRK06347 412 KGDSLWRIANNNKVTIANLKSWNNL-KSDFIYPGQKLKVSAgsTSNtntskpstntntskpstntntnakvYTVAKGDSL 490

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457 138 WTISQKFKVNFTELLKLNgaNEKS-YLDIGQVIKIPVTSMSQVPATSSNQNNNSTNTsnnnsgnnlsgpyiTYTSYTVQK 216
Cdd:PRK06347 491 WRIANNNKVTIANLKSWN--NLKSdFIYPGQKLKVSAGSTTNNTNTAKPSTNKPSNS--------------TVKTYTVKK 554

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 489610457 217 GDTAWSIAEKFGISMYELMEANNINSSTVlNIGQKLKI 254
Cdd:PRK06347 555 GDSLWAISRQYKTTVDNIKAWNKLTSNMI-HVGQKLTI 591
 
Name Accession Description Interval E-value
LysM COG1388
LysM repeat [Cell wall/membrane/envelope biogenesis];
208-256 2.81e-16

LysM repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440998 [Multi-domain]  Cd Length: 156  Bit Score: 75.90  E-value: 2.81e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 489610457 208 TYTSYTVQKGDTAWSIAEKFGISMYELMEANNINSSTvLNIGQKLKIPV 256
Cdd:COG1388  108 SPVTYTVKKGDTLWSIARRYGVSVEELKRWNGLSSDT-IRPGQKLKIPA 155
PRK06347 PRK06347
1,4-beta-N-acetylmuramoylhydrolase;
31-254 1.13e-15

1,4-beta-N-acetylmuramoylhydrolase;


Pssm-ID: 180536 [Multi-domain]  Cd Length: 592  Bit Score: 78.97  E-value: 1.13e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457  31 YKVQSGDTFWKIGQKYNISTAALLKANNANENTVlYPGQTIVLPIKDES--------------------------VYIVQ 84
Cdd:PRK06347 333 YTVVKGDSLWRIANNHKVTVANLKAWNNLKSDFI-YPGQKLKVSAGSTTsdtntskpstgtstskpstgtstnakVYTVV 411

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457  85 SGDTYWNISQKYGINFKELLALNNAnENSMLNVGDKVILPA--TAN-------------------------YTVQKGDTY 137
Cdd:PRK06347 412 KGDSLWRIANNNKVTIANLKSWNNL-KSDFIYPGQKLKVSAgsTSNtntskpstntntskpstntntnakvYTVAKGDSL 490

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457 138 WTISQKFKVNFTELLKLNgaNEKS-YLDIGQVIKIPVTSMSQVPATSSNQNNNSTNTsnnnsgnnlsgpyiTYTSYTVQK 216
Cdd:PRK06347 491 WRIANNNKVTIANLKSWN--NLKSdFIYPGQKLKVSAGSTTNNTNTAKPSTNKPSNS--------------TVKTYTVKK 554

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 489610457 217 GDTAWSIAEKFGISMYELMEANNINSSTVlNIGQKLKI 254
Cdd:PRK06347 555 GDSLWAISRQYKTTVDNIKAWNKLTSNMI-HVGQKLTI 591
LysM pfam01476
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
 212-255 7.08e-15

LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.


Pssm-ID: 396179 [Multi-domain]  Cd Length: 43  Bit Score: 68.19  E-value: 7.08e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 489610457  212 YTVQKGDTAWSIAEKFGISMYELMEANNINSSTvLNIGQKLKIP 255
Cdd:pfam01476   1 YTVKKGDTLSSIAKRYGITVEQLAELNGLSSPN-LYVGQKLKIP 43
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 210-254 2.32e-14

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 66.74  E-value: 2.32e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 489610457 210 TSYTVQKGDTAWSIAEKFGISMYELMEANNINSSTVLNIGQKLKI 254
Cdd:cd00118    1 KTYTVKPGDTLWSIAKKYGVTVEELAAANPLINPDCIYPGQKLKI 45
LysM smart00257
Lysin motif;
212-254 3.39e-14

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 66.32  E-value: 3.39e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 489610457   212 YTVQKGDTAWSIAEKFGISMYELMEANNINSSTVLNIGQKLKI 254
Cdd:smart00257   2 YTVKKGDTLSSIARRYGISVSDLLELNNILDPDNLQVGQKLKI 44
LysM COG1388
LysM repeat [Cell wall/membrane/envelope biogenesis];
26-76 7.75e-13

LysM repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440998 [Multi-domain]  Cd Length: 156  Bit Score: 65.89  E-value: 7.75e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 489610457  26 AQNVNYKVQSGDTFWKIGQKYNISTAALLKANNANeNTVLYPGQTIVLPIK 76
Cdd:COG1388  107 PSPVTYTVKKGDTLWSIARRYGVSVEELKRWNGLS-SDTIRPGQKLKIPAS 156
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 31-73 3.68e-12

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 60.58  E-value: 3.68e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 489610457  31 YKVQSGDTFWKIGQKYNISTAALLKANNANENTVLYPGQTIVL 73
Cdd:cd00118    3 YTVKPGDTLWSIAKKYGVTVEELAAANPLINPDCIYPGQKLKI 45
LysM smart00257
Lysin motif;
31-73 1.77e-11

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 58.61  E-value: 1.77e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 489610457    31 YKVQSGDTFWKIGQKYNISTAALLKANNANENTVLYPGQTIVL 73
Cdd:smart00257   2 YTVKKGDTLSSIARRYGISVSDLLELNNILDPDNLQVGQKLKI 44
LysM pfam01476
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
 31-74 3.36e-11

LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.


Pssm-ID: 396179 [Multi-domain]  Cd Length: 43  Bit Score: 57.79  E-value: 3.36e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 489610457   31 YKVQSGDTFWKIGQKYNISTAALLKANNANeNTVLYPGQTIVLP 74
Cdd:pfam01476   1 YTVKKGDTLSSIAKRYGITVEQLAELNGLS-SPNLYVGQKLKIP 43
spore_safA TIGR02899
spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found ...
 214-255 1.60e-07

spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found at the interface of the spore cortex and spore coat, and is dependent on SpoVID for its localization. This model is based on the N-terminal LysM (lysin motif) domain (see pfamAM model pfam01476) of SafA and, from several other spore-forming species, the protein with the most similar N-terminal region. However, this set of proteins differs greatly in C-terminal of the LysM domaim; blocks of 12-residue and 13-residue repeats are found in the Bacillus cereus group, tandem LysM domains in Thermoanaerobacter tengcongensis MB4, etc. in which one of which is found in most examples of endospore-forming bacteria. [Cellular processes, Sporulation and germination]


Pssm-ID: 131945 [Multi-domain]  Cd Length: 44  Bit Score: 47.48  E-value: 1.60e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 489610457  214 VQKGDTAWSIAEKFGISMYELMEAN-NINSSTVLNIGQKLKIP 255
Cdd:TIGR02899   1 VQKGDTLWKIAKKYGVDFDELIQANpQLSNPNLIYPGMKIKIP 43
spore_safA TIGR02899
spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found ...
 33-74 2.50e-06

spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found at the interface of the spore cortex and spore coat, and is dependent on SpoVID for its localization. This model is based on the N-terminal LysM (lysin motif) domain (see pfamAM model pfam01476) of SafA and, from several other spore-forming species, the protein with the most similar N-terminal region. However, this set of proteins differs greatly in C-terminal of the LysM domaim; blocks of 12-residue and 13-residue repeats are found in the Bacillus cereus group, tandem LysM domains in Thermoanaerobacter tengcongensis MB4, etc. in which one of which is found in most examples of endospore-forming bacteria. [Cellular processes, Sporulation and germination]


Pssm-ID: 131945 [Multi-domain]  Cd Length: 44  Bit Score: 44.02  E-value: 2.50e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 489610457   33 VQSGDTFWKIGQKYNISTAALLKANNANEN-TVLYPGQTIVLP 74
Cdd:TIGR02899   1 VQKGDTLWKIAKKYGVDFDELIQANPQLSNpNLIYPGMKIKIP 43
PRK14125 PRK14125
cell division suppressor protein YneA; Provisional
 209-257 3.63e-03

cell division suppressor protein YneA; Provisional


Pssm-ID: 184523 [Multi-domain]  Cd Length: 103  Bit Score: 36.93  E-value: 3.63e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 489610457 209 YTSYTVQKGDTAWSIAEKF----GISMYE----LMEANNINSStVLNIGQKLKIPVH 257
Cdd:PRK14125  36 YVEITVQEGDTLWALADQYagkhHMAKNEfiewVEDVNNLPSG-HIKAGDKLVIPVL 91
 
Name Accession Description Interval E-value
LysM COG1388
LysM repeat [Cell wall/membrane/envelope biogenesis];
208-256 2.81e-16

LysM repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440998 [Multi-domain]  Cd Length: 156  Bit Score: 75.90  E-value: 2.81e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 489610457 208 TYTSYTVQKGDTAWSIAEKFGISMYELMEANNINSSTvLNIGQKLKIPV 256
Cdd:COG1388  108 SPVTYTVKKGDTLWSIARRYGVSVEELKRWNGLSSDT-IRPGQKLKIPA 155
PRK06347 PRK06347
1,4-beta-N-acetylmuramoylhydrolase;
31-254 1.13e-15

1,4-beta-N-acetylmuramoylhydrolase;


Pssm-ID: 180536 [Multi-domain]  Cd Length: 592  Bit Score: 78.97  E-value: 1.13e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457  31 YKVQSGDTFWKIGQKYNISTAALLKANNANENTVlYPGQTIVLPIKDES--------------------------VYIVQ 84
Cdd:PRK06347 333 YTVVKGDSLWRIANNHKVTVANLKAWNNLKSDFI-YPGQKLKVSAGSTTsdtntskpstgtstskpstgtstnakVYTVV 411

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457  85 SGDTYWNISQKYGINFKELLALNNAnENSMLNVGDKVILPA--TAN-------------------------YTVQKGDTY 137
Cdd:PRK06347 412 KGDSLWRIANNNKVTIANLKSWNNL-KSDFIYPGQKLKVSAgsTSNtntskpstntntskpstntntnakvYTVAKGDSL 490

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457 138 WTISQKFKVNFTELLKLNgaNEKS-YLDIGQVIKIPVTSMSQVPATSSNQNNNSTNTsnnnsgnnlsgpyiTYTSYTVQK 216
Cdd:PRK06347 491 WRIANNNKVTIANLKSWN--NLKSdFIYPGQKLKVSAGSTTNNTNTAKPSTNKPSNS--------------TVKTYTVKK 554

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 489610457 217 GDTAWSIAEKFGISMYELMEANNINSSTVlNIGQKLKI 254
Cdd:PRK06347 555 GDSLWAISRQYKTTVDNIKAWNKLTSNMI-HVGQKLTI 591
LysM pfam01476
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
 212-255 7.08e-15

LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.


Pssm-ID: 396179 [Multi-domain]  Cd Length: 43  Bit Score: 68.19  E-value: 7.08e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 489610457  212 YTVQKGDTAWSIAEKFGISMYELMEANNINSSTvLNIGQKLKIP 255
Cdd:pfam01476   1 YTVKKGDTLSSIAKRYGITVEQLAELNGLSSPN-LYVGQKLKIP 43
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 210-254 2.32e-14

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 66.74  E-value: 2.32e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 489610457 210 TSYTVQKGDTAWSIAEKFGISMYELMEANNINSSTVLNIGQKLKI 254
Cdd:cd00118    1 KTYTVKPGDTLWSIAKKYGVTVEELAAANPLINPDCIYPGQKLKI 45
LysM smart00257
Lysin motif;
212-254 3.39e-14

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 66.32  E-value: 3.39e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 489610457   212 YTVQKGDTAWSIAEKFGISMYELMEANNINSSTVLNIGQKLKI 254
Cdd:smart00257   2 YTVKKGDTLSSIARRYGISVSDLLELNNILDPDNLQVGQKLKI 44
LysM COG1388
LysM repeat [Cell wall/membrane/envelope biogenesis];
26-76 7.75e-13

LysM repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440998 [Multi-domain]  Cd Length: 156  Bit Score: 65.89  E-value: 7.75e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 489610457  26 AQNVNYKVQSGDTFWKIGQKYNISTAALLKANNANeNTVLYPGQTIVLPIK 76
Cdd:COG1388  107 PSPVTYTVKKGDTLWSIARRYGVSVEELKRWNGLS-SDTIRPGQKLKIPAS 156
PRK06347 PRK06347
1,4-beta-N-acetylmuramoylhydrolase;
80-254 1.01e-12

1,4-beta-N-acetylmuramoylhydrolase;


Pssm-ID: 180536 [Multi-domain]  Cd Length: 592  Bit Score: 69.72  E-value: 1.01e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457  80 VYIVQSGDTYWNISQKYGINFKELLALNN--------------------ANEN-SMLNVGDKVILPATAN------YTVQ 132
Cdd:PRK06347 332 IYTVVKGDSLWRIANNHKVTVANLKAWNNlksdfiypgqklkvsagsttSDTNtSKPSTGTSTSKPSTGTstnakvYTVV 411

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457 133 KGDTYWTISQKFKVNFTELLKLNgaNEKS-YLDIGQVIKIPVTSMSQvpatssnqNNNSTNTSNNNSGNNLSGPYITYTS 211
Cdd:PRK06347 412 KGDSLWRIANNNKVTIANLKSWN--NLKSdFIYPGQKLKVSAGSTSN--------TNTSKPSTNTNTSKPSTNTNTNAKV 481

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 489610457 212 YTVQKGDTAWSIAEKFGISMYELMEANNINSSTVlNIGQKLKI 254
Cdd:PRK06347 482 YTVAKGDSLWRIANNNKVTIANLKSWNNLKSDFI-YPGQKLKV 523
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 31-73 3.68e-12

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 60.58  E-value: 3.68e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 489610457  31 YKVQSGDTFWKIGQKYNISTAALLKANNANENTVLYPGQTIVL 73
Cdd:cd00118    3 YTVKPGDTLWSIAKKYGVTVEELAAANPLINPDCIYPGQKLKI 45
LysM COG1388
LysM repeat [Cell wall/membrane/envelope biogenesis];
81-174 3.96e-12

LysM repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440998 [Multi-domain]  Cd Length: 156  Bit Score: 63.96  E-value: 3.96e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457  81 YIVQSGDTYWNISQKYGINFKellalnnanensmlnvgdkvilPATANYTVQKGDTYWTISQKFKVNFTELLKLNGANEk 160
Cdd:COG1388   86 YTVKSGDTLSGIARRYGAAAA----------------------PSPVTYTVKKGDTLWSIARRYGVSVEELKRWNGLSS- 142

                         90
                 ....*....|....
gi 489610457 161 SYLDIGQVIKIPVT 174
Cdd:COG1388  143 DTIRPGQKLKIPAS 156
LysM COG1388
LysM repeat [Cell wall/membrane/envelope biogenesis];
26-126 1.22e-11

LysM repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440998 [Multi-domain]  Cd Length: 156  Bit Score: 62.42  E-value: 1.22e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457  26 AQNVNYKVQSGDTFWKIGQKYNISTAAllkannanentvlypgqtivlpikDESVYIVQSGDTYWNISQKYGINFKELLA 105
Cdd:COG1388   81 AAAARYTVKSGDTLSGIARRYGAAAAP------------------------SPVTYTVKKGDTLWSIARRYGVSVEELKR 136

                         90       100
                 ....*....|....*....|.
gi 489610457 106 LNNANeNSMLNVGDKVILPAT 126
Cdd:COG1388  137 WNGLS-SDTIRPGQKLKIPAS 156
LysM smart00257
Lysin motif;
31-73 1.77e-11

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 58.61  E-value: 1.77e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 489610457    31 YKVQSGDTFWKIGQKYNISTAALLKANNANENTVLYPGQTIVL 73
Cdd:smart00257   2 YTVKKGDTLSSIARRYGISVSDLLELNNILDPDNLQVGQKLKI 44
mltD PRK10783
membrane-bound lytic murein transglycosylase D; Provisional
 31-130 2.93e-11

membrane-bound lytic murein transglycosylase D; Provisional


Pssm-ID: 182727 [Multi-domain]  Cd Length: 456  Bit Score: 64.76  E-value: 2.93e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457  31 YKVQSGDTFWKIGQKYNISTAALLKANNANENTvLYPGQTIV---------LPIKDESV-YIVQSGDTYWNISQKYGINF 100
Cdd:PRK10783 346 YKVRSGDTLSGIASRLNVSTKDLQQWNNLRGSK-LKVGQTLTigagssaqrLANNSDSItYRVRKGDSLSSIAKRHGVNI 424

                         90       100       110
                 ....*....|....*....|....*....|
gi 489610457 101 KELLALnNANENSMLNVGDKVILPATANYT 130
Cdd:PRK10783 425 KDVMRW-NSDTAKNLQPGDKLTLFVKNNST 453
PRK13914 PRK13914
invasion associated endopeptidase;
1-254 2.98e-11

invasion associated endopeptidase;


Pssm-ID: 237555 [Multi-domain]  Cd Length: 481  Bit Score: 64.82  E-value: 2.98e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457   1 MKLKKTVICGVLSIGIMA-GSSGFAFAQNVnyKVQSGDTFWKIGQKYNISTAALLKANNANENTVLyPGQtivlpiKDES 79
Cdd:PRK13914   1 MNMKKATIAATAGIAVTAfAAPTIASASTV--VVEAGDTLWGIAQSKGTTVDAIKKANNLTTDKIV-PGQ------KLQV 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457  80 VYIVQSGDTYWNISQKYgINFKELLALNNANENSmLNVGDKVILPATANYTVQKgDTYwtisQKFKVNFTELLKLNGANE 159
Cdd:PRK13914  72 NEVAAAEKTEKSVSATW-LNVRSGAGVDNSIITS-IKGGTKVTVETTESNGWHK-ITY----NDGKTGFVNGKYLTDKVT 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457 160 KSYLDIGQVIKIPVTSMSQVPATSSNQNNNSTNTSNN---NSGNNLSGPYI--TYTSYTVQKGDTAWSIAEKFGISMYEL 234
Cdd:PRK13914 145 STPVAPTQEVKKETTTQQAAPAAETKTEVKQTTQATTpapKVAETKETPVVdqNATTHAVKSGDTIWALSVKYGVSVQDI 224

                        250       260
                 ....*....|....*....|
gi 489610457 235 MEANNINSSTVLnIGQKLKI 254
Cdd:PRK13914 225 MSWNNLSSSSIY-VGQKLAI 243
LysM pfam01476
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
 31-74 3.36e-11

LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.


Pssm-ID: 396179 [Multi-domain]  Cd Length: 43  Bit Score: 57.79  E-value: 3.36e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 489610457   31 YKVQSGDTFWKIGQKYNISTAALLKANNANeNTVLYPGQTIVLP 74
Cdd:pfam01476   1 YTVKKGDTLSSIAKRYGITVEQLAELNGLS-SPNLYVGQKLKIP 43
LysM pfam01476
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
 129-172 5.58e-11

LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.


Pssm-ID: 396179 [Multi-domain]  Cd Length: 43  Bit Score: 57.02  E-value: 5.58e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 489610457  129 YTVQKGDTYWTISQKFKVNFTELLKLNGANEkSYLDIGQVIKIP 172
Cdd:pfam01476   1 YTVKKGDTLSSIAKRYGITVEQLAELNGLSS-PNLYVGQKLKIP 43
LysM smart00257
Lysin motif;
129-171 4.34e-10

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 54.76  E-value: 4.34e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 489610457   129 YTVQKGDTYWTISQKFKVNFTELLKLNGANEKSYLDIGQVIKI 171
Cdd:smart00257   2 YTVKKGDTLSSIARRYGISVSDLLELNNILDPDNLQVGQKLKI 44
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 129-171 4.40e-10

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 54.80  E-value: 4.40e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 489610457 129 YTVQKGDTYWTISQKFKVNFTELLKLNGANEKSYLDIGQVIKI 171
Cdd:cd00118    3 YTVKPGDTLWSIAKKYGVTVEELAAANPLINPDCIYPGQKLKI 45
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 80-123 5.15e-10

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 54.41  E-value: 5.15e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 489610457  80 VYIVQSGDTYWNISQKYGINFKELLALNNANENSMLNVGDKVIL 123
Cdd:cd00118    2 TYTVKPGDTLWSIAKKYGVTVEELAAANPLINPDCIYPGQKLKI 45
LysM smart00257
Lysin motif;
81-123 7.59e-10

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 53.99  E-value: 7.59e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 489610457    81 YIVQSGDTYWNISQKYGINFKELLALNNANENSMLNVGDKVIL 123
Cdd:smart00257   2 YTVKKGDTLSSIARRYGISVSDLLELNNILDPDNLQVGQKLKI 44
LysM pfam01476
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
 81-124 1.01e-09

LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.


Pssm-ID: 396179 [Multi-domain]  Cd Length: 43  Bit Score: 53.55  E-value: 1.01e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 489610457   81 YIVQSGDTYWNISQKYGINFKELLALNNANeNSMLNVGDKVILP 124
Cdd:pfam01476   1 YTVKKGDTLSSIAKRYGITVEQLAELNGLS-SPNLYVGQKLKIP 43
XkdP COG1652
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion ...
 208-255 1.91e-09

Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion transport and metabolism];


Pssm-ID: 441258 [Multi-domain]  Cd Length: 163  Bit Score: 56.55  E-value: 1.91e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 489610457 208 TYTSYTVQKGDTAWSIAEKF-GISMY--ELMEAN--NINSSTVLNIGQKLKIP 255
Cdd:COG1652  108 APKTYTVKPGDTLWGIAKRFyGDPARwpEIAEANrdQIKNPDLIYPGQVLRIP 160
PRK06347 PRK06347
1,4-beta-N-acetylmuramoylhydrolase;
107-254 1.53e-08

1,4-beta-N-acetylmuramoylhydrolase;


Pssm-ID: 180536 [Multi-domain]  Cd Length: 592  Bit Score: 56.63  E-value: 1.53e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457 107 NNANENSMLNVGDKVILPATANYTVQKGDTYWTISQKFKVNFTELLKLNgaNEKS-YLDIGQVIKIPVTSMSQvpatssn 185
Cdd:PRK06347 311 NSGSTGNSSNSSNTGNTSNAKIYTVVKGDSLWRIANNHKVTVANLKAWN--NLKSdFIYPGQKLKVSAGSTTS------- 381

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489610457 186 QNNNSTNTSNNNSGNNLSGPYITYTSYTVQKGDTAWSIAEKFGISMYELMEANNINSSTVLnIGQKLKI 254
Cdd:PRK06347 382 DTNTSKPSTGTSTSKPSTGTSTNAKVYTVVKGDSLWRIANNNKVTIANLKSWNNLKSDFIY-PGQKLKV 449
mltD PRK10783
membrane-bound lytic murein transglycosylase D; Provisional
 85-265 5.92e-08

membrane-bound lytic murein transglycosylase D; Provisional


Pssm-ID: 182727 [Multi-domain]  Cd Length: 456  Bit Score: 54.74  E-value: 5.92e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457  85 SGDTYWNISQKYGINFKELLALNNANENSMLNVGDKVILpATANYTVQKGDTYWTISQKFKVNFTELLKLNGAnEKSYLD 164
Cdd:PRK10783 303 SGPHYIMVPKKHADQLRESLASGEIAAVQSTLVADNTPL-NSRSYKVRSGDTLSGIASRLNVSTKDLQQWNNL-RGSKLK 380

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457 165 IGQVIKIPVTSMSQVPATSSNQnnnstntsnnnsgnnlsgpyITytsYTVQKGDTAWSIAEKFGISMYELMeanNINSST 244
Cdd:PRK10783 381 VGQTLTIGAGSSAQRLANNSDS--------------------IT---YRVRKGDSLSSIAKRHGVNIKDVM---RWNSDT 434

                        170       180
                 ....*....|....*....|...
gi 489610457 245 VLNI--GQKLKIPVHNvpvKSTP 265
Cdd:PRK10783 435 AKNLqpGDKLTLFVKN---NSTP 454
spore_safA TIGR02899
spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found ...
 214-255 1.60e-07

spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found at the interface of the spore cortex and spore coat, and is dependent on SpoVID for its localization. This model is based on the N-terminal LysM (lysin motif) domain (see pfamAM model pfam01476) of SafA and, from several other spore-forming species, the protein with the most similar N-terminal region. However, this set of proteins differs greatly in C-terminal of the LysM domaim; blocks of 12-residue and 13-residue repeats are found in the Bacillus cereus group, tandem LysM domains in Thermoanaerobacter tengcongensis MB4, etc. in which one of which is found in most examples of endospore-forming bacteria. [Cellular processes, Sporulation and germination]


Pssm-ID: 131945 [Multi-domain]  Cd Length: 44  Bit Score: 47.48  E-value: 1.60e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 489610457  214 VQKGDTAWSIAEKFGISMYELMEAN-NINSSTVLNIGQKLKIP 255
Cdd:TIGR02899   1 VQKGDTLWKIAKKYGVDFDELIQANpQLSNPNLIYPGMKIKIP 43
mltD PRK10783
membrane-bound lytic murein transglycosylase D; Provisional
 75-155 5.59e-07

membrane-bound lytic murein transglycosylase D; Provisional


Pssm-ID: 182727 [Multi-domain]  Cd Length: 456  Bit Score: 51.66  E-value: 5.59e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457  75 IKDESVYIVQSGDTYWNISQKYGINFKELLALNNANENSM-----LNVGDKVILPATAN------YTVQKGDTYWTISQK 143
Cdd:PRK10783 340 PLNSRSYKVRSGDTLSGIASRLNVSTKDLQQWNNLRGSKLkvgqtLTIGAGSSAQRLANnsdsitYRVRKGDSLSSIAKR 419

                         90
                 ....*....|..
gi 489610457 144 FKVNFTELLKLN 155
Cdd:PRK10783 420 HGVNIKDVMRWN 431
spore_safA TIGR02899
spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found ...
 33-74 2.50e-06

spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found at the interface of the spore cortex and spore coat, and is dependent on SpoVID for its localization. This model is based on the N-terminal LysM (lysin motif) domain (see pfamAM model pfam01476) of SafA and, from several other spore-forming species, the protein with the most similar N-terminal region. However, this set of proteins differs greatly in C-terminal of the LysM domaim; blocks of 12-residue and 13-residue repeats are found in the Bacillus cereus group, tandem LysM domains in Thermoanaerobacter tengcongensis MB4, etc. in which one of which is found in most examples of endospore-forming bacteria. [Cellular processes, Sporulation and germination]


Pssm-ID: 131945 [Multi-domain]  Cd Length: 44  Bit Score: 44.02  E-value: 2.50e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 489610457   33 VQSGDTFWKIGQKYNISTAALLKANNANEN-TVLYPGQTIVLP 74
Cdd:TIGR02899   1 VQKGDTLWKIAKKYGVDFDELIQANPQLSNpNLIYPGMKIKIP 43
XkdP COG1652
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion ...
 124-172 3.35e-06

Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion transport and metabolism];


Pssm-ID: 441258 [Multi-domain]  Cd Length: 163  Bit Score: 46.92  E-value: 3.35e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489610457 124 PATANYTVQKGDTYWTISQKF---KVNFTELLKLNGANEKS--YLDIGQVIKIP 172
Cdd:COG1652  107 DAPKTYTVKPGDTLWGIAKRFygdPARWPEIAEANRDQIKNpdLIYPGQVLRIP 160
PRK13914 PRK13914
invasion associated endopeptidase;
69-136 1.54e-05

invasion associated endopeptidase;


Pssm-ID: 237555 [Multi-domain]  Cd Length: 481  Bit Score: 47.10  E-value: 1.54e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457  69 QTIVLPIKDE--SVYIVQSGDTYWNISQKYGINFKELLALNNANENSMLnVGDKVILPATANYTVQKGDT 136
Cdd:PRK13914 188 ETKETPVVDQnaTTHAVKSGDTIWALSVKYGVSVQDIMSWNNLSSSSIY-VGQKLAIKQTANTATPKAEV 256
spore_safA TIGR02899
spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found ...
 83-125 3.75e-05

spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found at the interface of the spore cortex and spore coat, and is dependent on SpoVID for its localization. This model is based on the N-terminal LysM (lysin motif) domain (see pfamAM model pfam01476) of SafA and, from several other spore-forming species, the protein with the most similar N-terminal region. However, this set of proteins differs greatly in C-terminal of the LysM domaim; blocks of 12-residue and 13-residue repeats are found in the Bacillus cereus group, tandem LysM domains in Thermoanaerobacter tengcongensis MB4, etc. in which one of which is found in most examples of endospore-forming bacteria. [Cellular processes, Sporulation and germination]


Pssm-ID: 131945 [Multi-domain]  Cd Length: 44  Bit Score: 40.94  E-value: 3.75e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 489610457   83 VQSGDTYWNISQKYGINFKELLALNNANEN-SMLNVGDKVILPA 125
Cdd:TIGR02899   1 VQKGDTLWKIAKKYGVDFDELIQANPQLSNpNLIYPGMKIKIPS 44
XkdP COG1652
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion ...
 31-77 9.43e-05

Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion transport and metabolism];


Pssm-ID: 441258 [Multi-domain]  Cd Length: 163  Bit Score: 42.69  E-value: 9.43e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 489610457  31 YKVQSGDTFWKIGQKYNISTA---ALLKANNA---NENtVLYPGQTIVLPIKD 77
Cdd:COG1652  112 YTVKPGDTLWGIAKRFYGDPArwpEIAEANRDqikNPD-LIYPGQVLRIPALE 163
XkdP COG1652
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion ...
 80-127 1.57e-04

Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion transport and metabolism];


Pssm-ID: 441258 [Multi-domain]  Cd Length: 163  Bit Score: 41.92  E-value: 1.57e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 489610457  80 VYIVQSGDTYWNISQKY---GINFKELLALNNAN-ENS-MLNVGDKVILPATA 127
Cdd:COG1652  111 TYTVKPGDTLWGIAKRFygdPARWPEIAEANRDQiKNPdLIYPGQVLRIPALE 163
PRK14125 PRK14125
cell division suppressor protein YneA; Provisional
 1-76 1.08e-03

cell division suppressor protein YneA; Provisional


Pssm-ID: 184523 [Multi-domain]  Cd Length: 103  Bit Score: 38.47  E-value: 1.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489610457   1 MKLKKT---------VICGVLSIGIMAGSSGfAFAQNVNYKVQSGDTFWKIGQKYN----ISTAALL----KANNANEnT 63
Cdd:PRK14125   1 LKLKESkihvsiffvLTALVLLIFVYATVPV-DKNQYVEITVQEGDTLWALADQYAgkhhMAKNEFIewveDVNNLPS-G 78

                         90
                 ....*....|...
gi 489610457  64 VLYPGQTIVLPIK 76
Cdd:PRK14125  79 HIKAGDKLVIPVL 91
PRK14125 PRK14125
cell division suppressor protein YneA; Provisional
 209-257 3.63e-03

cell division suppressor protein YneA; Provisional


Pssm-ID: 184523 [Multi-domain]  Cd Length: 103  Bit Score: 36.93  E-value: 3.63e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 489610457 209 YTSYTVQKGDTAWSIAEKF----GISMYE----LMEANNINSStVLNIGQKLKIPVH 257
Cdd:PRK14125  36 YVEITVQEGDTLWALADQYagkhHMAKNEfiewVEDVNNLPSG-HIKAGDKLVIPVL 91
PRK11198 PRK11198
LysM domain/BON superfamily protein; Provisional
 212-255 6.57e-03

LysM domain/BON superfamily protein; Provisional


Pssm-ID: 236880 [Multi-domain]  Cd Length: 147  Bit Score: 36.82  E-value: 6.57e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 489610457 212 YTVQKGDTAWSIAEKF---GISMYELMEANNINSSTVLNI--GQKLKIP 255
Cdd:PRK11198  98 YTVKSGDTLSAIAKKVygnANKYNKIFEANKPMLKSPDKIypGQVLRIP 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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