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Conserved domains on  [gi|489612078|ref|WP_003516519|]
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MULTISPECIES: DUF1013 domain-containing protein [Rhizobium/Agrobacterium group]

Protein Classification

DUF1013 domain-containing protein( domain architecture ID 10008045)

DUF1013 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG3820 COG3820
Uncharacterized conserved protein, DUF1013 family [Function unknown];
2-227 5.10e-155

Uncharacterized conserved protein, DUF1013 family [Function unknown];


:

Pssm-ID: 443032  Cd Length: 228  Bit Score: 429.34  E-value: 5.10e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612078   2 AQQLLMPKATAVWLVDNTALSFDQIATFCKLHPLEVKAIADGEAAQGIKGLDPIATGQLSRDEIARAEGNPNHKLKLSEP 81
Cdd:COG3820    1 MTQPLMPKATAVWLVDNTALTFEQIADFCGLHPLEVQAIADGEVAQGIKGLDPIANGQLTREEIERAEADPNYRLKLAES 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612078  82 KVRVPESKRRGPRYTPVSKRQDRPNAILWLVRNHPELKDAQISRLVGTTKSTIEQIRDRTHWNSANLTPMDPVTLGLCSQ 161
Cdd:COG3820   81 KVPVPERKRKGPRYTPVSKRQDRPDAIAWLLRNHPELKDAQISKLVGTTKPTIQAIRDRTHWNSANIKPRDPVTLGLCSQ 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489612078 162 IDLDLEVERASRGRPLPTAEELGNTLQPATATEGLDYNFQRD--EEEKQIDADAVFKKLSSLKSAPKD 227
Cdd:COG3820  161 IDLDAAVQKAAKRRPREEEEEGGRTLLPAEETLAPEAAEDEAraEEEEELDADSVFAKLKSLKGDDED 228
 
Name Accession Description Interval E-value
COG3820 COG3820
Uncharacterized conserved protein, DUF1013 family [Function unknown];
2-227 5.10e-155

Uncharacterized conserved protein, DUF1013 family [Function unknown];


Pssm-ID: 443032  Cd Length: 228  Bit Score: 429.34  E-value: 5.10e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612078   2 AQQLLMPKATAVWLVDNTALSFDQIATFCKLHPLEVKAIADGEAAQGIKGLDPIATGQLSRDEIARAEGNPNHKLKLSEP 81
Cdd:COG3820    1 MTQPLMPKATAVWLVDNTALTFEQIADFCGLHPLEVQAIADGEVAQGIKGLDPIANGQLTREEIERAEADPNYRLKLAES 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612078  82 KVRVPESKRRGPRYTPVSKRQDRPNAILWLVRNHPELKDAQISRLVGTTKSTIEQIRDRTHWNSANLTPMDPVTLGLCSQ 161
Cdd:COG3820   81 KVPVPERKRKGPRYTPVSKRQDRPDAIAWLLRNHPELKDAQISKLVGTTKPTIQAIRDRTHWNSANIKPRDPVTLGLCSQ 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489612078 162 IDLDLEVERASRGRPLPTAEELGNTLQPATATEGLDYNFQRD--EEEKQIDADAVFKKLSSLKSAPKD 227
Cdd:COG3820  161 IDLDAAVQKAAKRRPREEEEEGGRTLLPAEETLAPEAAEDEAraEEEEELDADSVFAKLKSLKGDDED 228
TrcR pfam06242
Transcriptional cell cycle regulator TrcR; This family represents a transcriptional cell cycle ...
35-172 1.72e-97

Transcriptional cell cycle regulator TrcR; This family represents a transcriptional cell cycle regulator (TrcR) found in Proteobacteria, mainly Alphaproteobacteria. It has been shown to associate with promoters and coding sequences in vivo in a rifampicin-dependent manner and to interact physically and genetically with RNA polymerase, resulting in the integration of cell cycle and antibiotic stress control with the general transcriptional machinery.


Pssm-ID: 428843  Cd Length: 138  Bit Score: 280.25  E-value: 1.72e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612078   35 LEVKAIADGEAAQGIKGLDPIATGQLSRDEIARAEGNPNHKLKLSEPKVRVPESKRRGPRYTPVSKRQDRPNAILWLVRN 114
Cdd:pfam06242   1 LEVQGIADGEVAQGIKGLDPIANGQLTREEIERCEADPNYRLKLQKSKVPVPERRRKGPRYTPVSKRQDRPDAIAWLLRN 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 489612078  115 HPELKDAQISRLVGTTKSTIEQIRDRTHWNSANLTPMDPVTLGLCSQIDLDLEVERAS 172
Cdd:pfam06242  81 HPELSDAQIAKLVGTTKPTIAAIRDRTHWNSANIKPRDPVTLGLCSQIDLDAAVEKAA 138
 
Name Accession Description Interval E-value
COG3820 COG3820
Uncharacterized conserved protein, DUF1013 family [Function unknown];
2-227 5.10e-155

Uncharacterized conserved protein, DUF1013 family [Function unknown];


Pssm-ID: 443032  Cd Length: 228  Bit Score: 429.34  E-value: 5.10e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612078   2 AQQLLMPKATAVWLVDNTALSFDQIATFCKLHPLEVKAIADGEAAQGIKGLDPIATGQLSRDEIARAEGNPNHKLKLSEP 81
Cdd:COG3820    1 MTQPLMPKATAVWLVDNTALTFEQIADFCGLHPLEVQAIADGEVAQGIKGLDPIANGQLTREEIERAEADPNYRLKLAES 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612078  82 KVRVPESKRRGPRYTPVSKRQDRPNAILWLVRNHPELKDAQISRLVGTTKSTIEQIRDRTHWNSANLTPMDPVTLGLCSQ 161
Cdd:COG3820   81 KVPVPERKRKGPRYTPVSKRQDRPDAIAWLLRNHPELKDAQISKLVGTTKPTIQAIRDRTHWNSANIKPRDPVTLGLCSQ 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489612078 162 IDLDLEVERASRGRPLPTAEELGNTLQPATATEGLDYNFQRD--EEEKQIDADAVFKKLSSLKSAPKD 227
Cdd:COG3820  161 IDLDAAVQKAAKRRPREEEEEGGRTLLPAEETLAPEAAEDEAraEEEEELDADSVFAKLKSLKGDDED 228
TrcR pfam06242
Transcriptional cell cycle regulator TrcR; This family represents a transcriptional cell cycle ...
35-172 1.72e-97

Transcriptional cell cycle regulator TrcR; This family represents a transcriptional cell cycle regulator (TrcR) found in Proteobacteria, mainly Alphaproteobacteria. It has been shown to associate with promoters and coding sequences in vivo in a rifampicin-dependent manner and to interact physically and genetically with RNA polymerase, resulting in the integration of cell cycle and antibiotic stress control with the general transcriptional machinery.


Pssm-ID: 428843  Cd Length: 138  Bit Score: 280.25  E-value: 1.72e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612078   35 LEVKAIADGEAAQGIKGLDPIATGQLSRDEIARAEGNPNHKLKLSEPKVRVPESKRRGPRYTPVSKRQDRPNAILWLVRN 114
Cdd:pfam06242   1 LEVQGIADGEVAQGIKGLDPIANGQLTREEIERCEADPNYRLKLQKSKVPVPERRRKGPRYTPVSKRQDRPDAIAWLLRN 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 489612078  115 HPELKDAQISRLVGTTKSTIEQIRDRTHWNSANLTPMDPVTLGLCSQIDLDLEVERAS 172
Cdd:pfam06242  81 HPELSDAQIAKLVGTTKPTIAAIRDRTHWNSANIKPRDPVTLGLCSQIDLDAAVEKAA 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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