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Conserved domains on  [gi|489612331|ref|WP_003516772|]
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MULTISPECIES: carbohydrate ABC transporter permease [Rhizobium/Agrobacterium group]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 11417684)

carbohydrate ABC transporter permease, part of a periplasmic binding protein (PBP)-dependent ABC transporter may be involved in transport of one or more of a variety of mono-, di-, or polysaccharides, such as trehalose/maltose (MalG) and alginate (AlgM); responsible for translocation of the substrate across the membrane

Gene Ontology:  GO:0055085|GO:0008643
PubMed:  19234479|27273632
TCDB:  3.A.1.1.

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 17-285 2.06e-90

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 269.66  E-value: 2.06e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  17 VGIYCGIAVFLTFVLAPFVEGFLVSLKPLSLLFSSPYKFWPENGSFEAYRTMWVSVPgFARYVFNSFFISTISTIIVLLL 96
Cdd:COG0395   15 ILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGP-FGRYLLNSLIVAVVSTVLSLLL 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  97 VVPASYAFARFQFRGRGQLLGAFLAINMFSGAVLLIPLYRLMRNMGVLNTYLAMIIPGAAFLIPTAIWLLRTYMLRIPRE 176
Cdd:COG0395   94 SSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFFRSIPRE 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331 177 LEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTFIGAYaQQFIFALTFNSKTEYMPLPIGLFAYFGRQEVVWNELMAA 256
Cdd:COG0395  174 LEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAW-NDFLWPLILLTSPDLRTLPVGLASFQGQYGTDWGLLMAA 252

                        250       260
                 ....*....|....*....|....*....
gi 489612331 257 SFVGIAPAMVVIFFMQRYLVSGLTAGAVK 285
Cdd:COG0395  253 AVIATLPVLILFLFLQRYFVRGLTAGAVK 281
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 17-285 2.06e-90

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 269.66  E-value: 2.06e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  17 VGIYCGIAVFLTFVLAPFVEGFLVSLKPLSLLFSSPYKFWPENGSFEAYRTMWVSVPgFARYVFNSFFISTISTIIVLLL 96
Cdd:COG0395   15 ILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGP-FGRYLLNSLIVAVVSTVLSLLL 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  97 VVPASYAFARFQFRGRGQLLGAFLAINMFSGAVLLIPLYRLMRNMGVLNTYLAMIIPGAAFLIPTAIWLLRTYMLRIPRE 176
Cdd:COG0395   94 SSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFFRSIPRE 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331 177 LEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTFIGAYaQQFIFALTFNSKTEYMPLPIGLFAYFGRQEVVWNELMAA 256
Cdd:COG0395  174 LEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAW-NDFLWPLILLTSPDLRTLPVGLASFQGQYGTDWGLLMAA 252

                        250       260
                 ....*....|....*....|....*....
gi 489612331 257 SFVGIAPAMVVIFFMQRYLVSGLTAGAVK 285
Cdd:COG0395  253 AVIATLPVLILFLFLQRYFVRGLTAGAVK 281
malG PRK10998
maltose ABC transporter permease MalG;
14-285 8.05e-36

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 129.83  E-value: 8.05e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  14 YEIVGIYCGIAVFLTFVLAPFVEGFLVSLKPLSLlfsSPYKFWPENGSFEAYRTMW----------VSVPGFA--RYVFN 81
Cdd:PRK10998  11 LRLFATHLLLLGFIALIMFPLLMVIAISLREGNF---ATGSLIPEQISWEHWKLALgfsvehadgrVTPPPFPvlLWLWN 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  82 SFFISTISTIIVLLLVVPASYAFARFQFRGRGQLLGAFLAINMFSGAVLLIPLYRLMRNMGV------LNTYLAMIIpga 155
Cdd:PRK10998  88 SVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQyipfigLNTHGGVIF--- 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331 156 AFL--IPTAIWLLRTYMLRIPRELEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTFIGAYAQQFIFALTFNSKTEYM 233
Cdd:PRK10998 165 AYLggIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYT 244

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 489612331 234 pLPIGLFAYFGRQEVVWNELMAASFVGIAPAMVVIFFMQRYLVSGLTAGAVK 285
Cdd:PRK10998 245 -LAVGMQQYLNPQNYLWGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVK 295
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 82-272 3.99e-13

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 66.88  E-value: 3.99e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331   82 SFFISTISTIIVLLLVVPASYAFARFQFRGRGQLLGAFLAINMFS----GAVLLI------PLYRLMRNMG--VLNTYLA 149
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPptvlGFYLLIafgpngPIGKLLELFGisLVFTFTG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  150 MIIPGAAFLIPTAIWLLRTYMLRIPRELEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTF---IGAYAQQFIFALTF 226
Cdd:TIGR02141  83 AVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFaraLGEFGATLMFAGNI 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 489612331  227 NSKTEYMPLPIGLFAYFGrqevvWNELMAASFVGIAPAMVVIFFMQ 272
Cdd:TIGR02141 163 PGETQTIPLAIYDAVESD-----YELAHQLSLVLLAISLIVLLLVE 203
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 80-263 1.33e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.99  E-value: 1.33e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  80 FNSFFISTISTIIVLLLVVPASYAFARFQFRGRGQLLGAFLAINMFSGAVLLIPLYRLMRNMGVLNTYLAMIIPGAAFL- 158
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILAl 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331 159 ---IPTAIWLLRTYMLRIPRELEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTFIGAYAqQFIFALTFNSKTEYMPL 235
Cdd:cd06261   82 lliAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALG-EFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*...
gi 489612331 236 PIGLFAYFGRQEVVWNELMAASFVGIAP 263
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLL 188
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 109-279 1.02e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 53.84  E-value: 1.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  109 FRGRGQLLGAFLAINMFSGAVLLIPLYRLMRNMGVLNTYLAMIIPGAAFLIPTAIWLLRTYMLRIPRELEEAAYVDGASY 188
Cdd:pfam00528  14 RRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASR 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  189 FYTFRRVILPLAMPGIAVVSITTFIGAYAQQFIFALTFNSKTEYMPLPIglfAYFGRQEVVWNELMAASFVGIAPAMVVI 268
Cdd:pfam00528  94 WQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIE---AILGYDYPEIQGPVLAAALILLLLNLLV 170

                         170
                  ....*....|.
gi 489612331  269 FFMQRYLVSGL 279
Cdd:pfam00528 171 DILQRLLDPRV 181
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 17-285 2.06e-90

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 269.66  E-value: 2.06e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  17 VGIYCGIAVFLTFVLAPFVEGFLVSLKPLSLLFSSPYKFWPENGSFEAYRTMWVSVPgFARYVFNSFFISTISTIIVLLL 96
Cdd:COG0395   15 ILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEFTLENYRAAFTDGP-FGRYLLNSLIVAVVSTVLSLLL 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  97 VVPASYAFARFQFRGRGQLLGAFLAINMFSGAVLLIPLYRLMRNMGVLNTYLAMIIPGAAFLIPTAIWLLRTYMLRIPRE 176
Cdd:COG0395   94 SSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFFRSIPRE 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331 177 LEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTFIGAYaQQFIFALTFNSKTEYMPLPIGLFAYFGRQEVVWNELMAA 256
Cdd:COG0395  174 LEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAW-NDFLWPLILLTSPDLRTLPVGLASFQGQYGTDWGLLMAA 252

                        250       260
                 ....*....|....*....|....*....
gi 489612331 257 SFVGIAPAMVVIFFMQRYLVSGLTAGAVK 285
Cdd:COG0395  253 AVIATLPVLILFLFLQRYFVRGLTAGAVK 281
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 4-285 2.12e-69

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 216.17  E-value: 2.12e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331   4 KNAMINRYRWYEIVGIYCGIAVFLTFVLAPFVEGFLVSLKPLSLLFSSpyKFWPENGSFEAYRTMWVSVPgFARYVFNSF 83
Cdd:COG3833    3 RRKSRKRRRRLKLGLRHLVLIILAIIALFPILWVVSASFNPGGSLYSS--SLIPENFTLENYKKLFTETP-FLRWFLNSL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  84 FISTISTIIVLLLVVPASYAFARFQFRGRGQLLGAFLAINMFSGAVLLIPLYRLMRNMGVLNTYLAMIIPGAAFLIPTAI 163
Cdd:COG3833   80 IVAVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILVYLGGAIPFNT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331 164 WLLRTYMLRIPRELEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTFIGAYAqQFIFALTFNSKTEYMPLPIGLFAY- 242
Cdd:COG3833  160 WLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWN-DFILASVLLRSPENYTLAVGLYSFv 238

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 489612331 243 FGRQEVVWNELMAASFVGIAPAMVVIFFMQRYLVSGLTAGAVK 285
Cdd:COG3833  239 SDQRNTNWGVFAAGAVLVAIPIVILFLFLQRYLVSGLTAGGVK 281
malG PRK10998
maltose ABC transporter permease MalG;
14-285 8.05e-36

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 129.83  E-value: 8.05e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  14 YEIVGIYCGIAVFLTFVLAPFVEGFLVSLKPLSLlfsSPYKFWPENGSFEAYRTMW----------VSVPGFA--RYVFN 81
Cdd:PRK10998  11 LRLFATHLLLLGFIALIMFPLLMVIAISLREGNF---ATGSLIPEQISWEHWKLALgfsvehadgrVTPPPFPvlLWLWN 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  82 SFFISTISTIIVLLLVVPASYAFARFQFRGRGQLLGAFLAINMFSGAVLLIPLYRLMRNMGV------LNTYLAMIIpga 155
Cdd:PRK10998  88 SVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQyipfigLNTHGGVIF--- 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331 156 AFL--IPTAIWLLRTYMLRIPRELEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTFIGAYAQQFIFALTFNSKTEYM 233
Cdd:PRK10998 165 AYLggIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYT 244

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 489612331 234 pLPIGLFAYFGRQEVVWNELMAASFVGIAPAMVVIFFMQRYLVSGLTAGAVK 285
Cdd:PRK10998 245 -LAVGMQQYLNPQNYLWGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVK 295
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 23-275 1.67e-28

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 109.82  E-value: 1.67e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  23 IAVFLTFVLAPfvegfLVSLKPLSLLFSSPYKFWPENGSFEAYRTMWvSVPGFARYVFNSFFISTISTIIVLLLVVPASY 102
Cdd:COG1177   13 LALVLLFLYLP-----ILVLVLYSFNDSWFLTFPPEGFTLRWYAELF-SDPRLLDALLNSLLIALLSTLLATVLGTPAAL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331 103 AFARFQFRGRGQLLGAFLAINMFSGAVLLIPLYRLMRNMGVLNTYLAMIIPGAAFLIPTAIWLLRTYMLRIPRELEEAAY 182
Cdd:COG1177   87 ALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAAR 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331 183 VDGASYFYTFRRVILPLAMPGIAVVSITTFIGAYAqQFIFALtFNSKTEYMPLPIGLFAYFgrQEVVWNELMAASFVGIA 262
Cdd:COG1177  167 DLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFD-EFVITL-FLAGPGVTTLPVYIYSMI--RRGISPEINALSTLLIL 242

                        250
                 ....*....|...
gi 489612331 263 PAMVVIFFMQRYL 275
Cdd:COG1177  243 LSLLLLLLAERLR 255
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 22-215 2.31e-19

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 85.58  E-value: 2.31e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  22 GIAVFLTFVLAPFVEGFLVSLKPLSLLFSSPYKFwpengSFEAYRTMWVSvPGFARYVFNSFFISTISTIIVLLLVVPAS 101
Cdd:COG1176   18 ALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGF-----TLENYARLFTD-PLYLKVLLRTLWIALLTTLICLLLGYPIA 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331 102 YAFARFQFRGRGQLLGAFLA-------INMFSGAVLLIP---LYRLMRNMGV-------LNTYLAMIIPGAAFLIPTAIW 164
Cdd:COG1176   92 YFLARAPPRWRNLLLLLVILpfwtsflVRTYAWIVLLGRnglLNSLLLALGLideplrlLYTEFAVVIGLVYVYLPFMVL 171

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 489612331 165 LLRTYMLRIPRELEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTFIGA 215
Cdd:COG1176  172 PLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPA 222
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
7-279 3.69e-18

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 82.09  E-value: 3.69e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331   7 MINRYRWYEI---VGIYCGIAVfltfVLAPFVEGFLVSLKPLSLLFSSPYKFWPENGSFEAYRTMWV-----SVPGFARY 78
Cdd:PRK10973   1 MIENRRGLDIfshTMLILGIAV----ILFPLYVAFVAATLDKQAVFAVPMTLIPGTHLLENIANIWVngvgnNSAPFGRM 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  79 VFNSFFISTISTIIVLLLVVPASYAFARFQFRGRGQLLGAFLAINMFSGAVLLIPLYRLMRNMGVLNTYLAMIIPGAAFl 158
Cdd:PRK10973  77 LLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMAS- 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331 159 iPTAIWLLRTYMLRIPRELEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTFIGAYaQQFIFALTFNSKTEYMPLPIG 238
Cdd:PRK10973 156 -ATATFLFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGW-NQYLWPLLIITDVSLGTAVAG 233

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 489612331 239 LFAYF--GRQEVVWNELMAASFVGIAPAMVVIFFMQRYLVSGL 279
Cdd:PRK10973 234 IKGMIatGEGTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRGL 276
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
25-213 2.06e-17

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 81.75  E-value: 2.06e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  25 VFLTFVLAPFVEGFLVSLkpLSLLFSSPYKFWPENGSFEAYRTMWVSvPGFARYVFNSFFISTISTIIVLLLVVPASYAF 104
Cdd:COG1178  289 LALALCLLLVLLGLLLPL--LALLLWSLTKALDDNLTLDNYRFVLLD-PSLLRALLNSLLLALLAALLAVLLALLLAYLV 365

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331 105 ARFQFRGRGQLLGAFLAINMFSGAVL---LIPLYRLMRNMGVLNTYLAMIIPGAAFLIPTAIWLLRTYMLRIPRELEEAA 181
Cdd:COG1178  366 RRRRGRLARLLDRLAMLPYAVPGIVLglgLLLLFNRPLPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAA 445

                        170       180       190
                 ....*....|....*....|....*....|..
gi 489612331 182 YVDGASYFYTFRRVILPLAMPGIAVVSITTFI 213
Cdd:COG1178  446 RSLGASPLRTLRRVTLPLLRPGLLAAALLVFV 477
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
7-213 3.72e-16

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 77.89  E-value: 3.72e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331   7 MINRYRWYEIVGIYCGIAVFLTFVLAP----FVEGFLVSLKPLSLLFSSPYkfwpengsfeayrtmwvsvpgFARYVFNS 82
Cdd:COG1178    1 MSTRPRRRPRLLLLLLALLLALLVLLPllalLLRAFTDGLANFWALLSDPY---------------------LWRALGNT 59

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  83 FFISTISTIIVLLLVVPASYAFARFQFRGRGQLLGAFLAINMFSGAVLLIPLYRLMRNMGVLNTYLAMI----------I 152
Cdd:COG1178   60 LLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALfgleppdiygL 139

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489612331 153 PGAA-----FLIPTAIWLLRTYMLRIPRELEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTFI 213
Cdd:COG1178  140 GGIIlvlvlFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFL 205
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
23-225 3.59e-14

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 70.93  E-value: 3.59e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  23 IAVFLTFVLAPFVEGFLVSLKPLSLlFSSPYKFwpeNGsFEAYRTMWVSvPGFARYVFNSFFISTISTIIVLLLVVPASY 102
Cdd:COG1175   28 LLLLLVFVLYPLLYTLYLSFTDWNL-LGPPPEF---VG-LDNYARLFTD-PRFWNALGNTLLFTVVSVPLQLVLGLLLAL 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331 103 AFARfQFRGRGQLLGAFLAINMFSGAVLLIpLYRLM--RNMGVLNTYLAMI-IPGAAFL----------IPTAIW----- 164
Cdd:COG1175  102 LLNR-KLRGRGFFRTLFFLPWVISPVVVAL-IWKWLfnPDYGLLNALLGALgLEPINWLgdpslalpavIIVTVWkgtgf 179

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489612331 165 ---LLRTYMLRIPRELEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTFIGAYaQQF--IFALT 225
Cdd:COG1175  180 nmlIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGAL-QVFdlVYVLT 244
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 79-212 8.42e-14

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 68.92  E-value: 8.42e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  79 VFNSFFISTISTIIVLLLVVPASYAFARFQFRGRGqLLGAFLAINMF-----SGAVLLI------PLYRLMRNMGVLN-- 145
Cdd:COG4149    9 LWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKG-LLEALVTLPLVlpptvLGFYLLLlfgrngPLGQLLEELFGISlv 87

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489612331 146 -TYLAMIIPGAAFLIPTAIWLLRTYMLRIPRELEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTF 212
Cdd:COG4149   88 fTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAF 155
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 82-237 1.62e-13

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 68.62  E-value: 1.62e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  82 SFFISTISTIIVLLLVVPASYAFARFQFRGRgQLLGAFLAINM-FSGAVLLIPLYRLMRNMGVLNTYL------------ 148
Cdd:COG0555   59 SLGTALIAALINLVFGLPLAWVLVRYRFPGK-RLVDALVDLPFaLPTAVAGIALLLLFGPNGWLGQLLaplgikvaftpl 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331 149 ----AMIIPGAAFLIPTaiwlLRTYMLRIPRELEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTF---IGAYAQQFI 221
Cdd:COG0555  138 givlAQTFVSLPFVVRT----VQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFaraLGEFGAVIF 213

                        170
                 ....*....|....*.
gi 489612331 222 FALTFNSKTEYMPLPI 237
Cdd:COG0555  214 IAGNLPMKTEILPLLI 229
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 82-272 3.99e-13

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 66.88  E-value: 3.99e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331   82 SFFISTISTIIVLLLVVPASYAFARFQFRGRGQLLGAFLAINMFS----GAVLLI------PLYRLMRNMG--VLNTYLA 149
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPptvlGFYLLIafgpngPIGKLLELFGisLVFTFTG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  150 MIIPGAAFLIPTAIWLLRTYMLRIPRELEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTF---IGAYAQQFIFALTF 226
Cdd:TIGR02141  83 AVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFaraLGEFGATLMFAGNI 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 489612331  227 NSKTEYMPLPIGLFAYFGrqevvWNELMAASFVGIAPAMVVIFFMQ 272
Cdd:TIGR02141 163 PGETQTIPLAIYDAVESD-----YELAHQLSLVLLAISLIVLLLVE 203
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 80-263 1.33e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.99  E-value: 1.33e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  80 FNSFFISTISTIIVLLLVVPASYAFARFQFRGRGQLLGAFLAINMFSGAVLLIPLYRLMRNMGVLNTYLAMIIPGAAFL- 158
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILAl 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331 159 ---IPTAIWLLRTYMLRIPRELEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTFIGAYAqQFIFALTFNSKTEYMPL 235
Cdd:cd06261   82 lliAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALG-EFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*...
gi 489612331 236 PIGLFAYFGRQEVVWNELMAASFVGIAP 263
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLL 188
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 109-279 1.02e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 53.84  E-value: 1.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  109 FRGRGQLLGAFLAINMFSGAVLLIPLYRLMRNMGVLNTYLAMIIPGAAFLIPTAIWLLRTYMLRIPRELEEAAYVDGASY 188
Cdd:pfam00528  14 RRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASR 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  189 FYTFRRVILPLAMPGIAVVSITTFIGAYAQQFIFALTFNSKTEYMPLPIglfAYFGRQEVVWNELMAASFVGIAPAMVVI 268
Cdd:pfam00528  94 WQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIE---AILGYDYPEIQGPVLAAALILLLLNLLV 170

                         170
                  ....*....|.
gi 489612331  269 FFMQRYLVSGL 279
Cdd:pfam00528 171 DILQRLLDPRV 181
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 61-204 2.94e-06

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 47.76  E-value: 2.94e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  61 SFEAYRTMWVsvPGFARYVFNSFFISTISTIIVLLLVVPASYAFARFQFRGRGQLLgaFLAINMFsGAVLLIPLYRL--- 137
Cdd:PRK09497  49 TLDNYTRLLD--PLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLL--FLLIVPF-WTNSLIRIYGLkif 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331 138 MRNMGVLNTYL-----------------AMIIPGAAFLIPTAIWLLRTYMLRIPRELEEAAYVDGASYFYTFRRVILPLA 200
Cdd:PRK09497 124 LSTKGYLNEFLlwlgvidtpirimftesAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLT 203


                 ....
gi 489612331 201 MPGI 204
Cdd:PRK09497 204 MPGI 207
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 83-205 1.01e-05

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 45.75  E-value: 1.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  83 FFISTISTIIVLLlvvpASYAFARFQFRGRGQLLGAFLAINMFSGAVLLIPLYRLMRNMGVLNTYLAMIIPGAAFLIPTA 162
Cdd:PRK09500  67 VFSATFATLIGSL----TAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFV 142

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 489612331 163 IWLLRTYMLRIPRELEEAAYVDGASYFYTFRRVILPLAMPGIA 205
Cdd:PRK09500 143 VVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVA 185
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 73-213 1.90e-03

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 39.66  E-value: 1.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331   73 PGFARYVFNSFFISTISTIIVLLLVVPASYAFARFQFRGRGQL----LGAFLAINMFSGavllIPLYRLMRNMGVLNTYL 148
Cdd:TIGR03262  50 PGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFrlvaLLPLLAPSLLPA----ISLIYLFGNQGLLKGLL 125

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489612331  149 ---------AMIIPGAAFLIPTAIWLLRTYMLRIPRELEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTFI 213
Cdd:TIGR03262 126 ggfsiygfwGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFT 199
cysT CHL00187
sulfate transport protein; Provisional
 82-204 2.87e-03

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 38.46  E-value: 2.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  82 SFFISTISTIIVLLLVVPASYAFARFQFRGRgQLLGAF----LAINMFSGAVLLIPLY-------RLMRNMGV------L 144
Cdd:CHL00187  60 TLSMALIAALINGFFGLLIAWVLVRYNFPGK-RLLDAAvdlpFALPTSVAGLTLATVYgdngwigHLLSHLGIqivftkL 138

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331 145 NTYLAMIIPGAAFLIPTAIWLLRTymlrIPRELEEAAYVDGASYFYTFRRVILPLAMPGI 204
Cdd:CHL00187 139 GVLLAMIFVSFPFVVRTIQPVLQE----IEKELEEAAWSLGASPWQTFWKVIFPPLIPAL 194
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 82-215 6.52e-03

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 37.38  E-value: 6.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489612331  82 SFFISTISTIIVLLLVVPASYAFARFQFRGRGQLLgafLAINMFSGAVLLIPLYRLM---RNMGVLN------------- 145
Cdd:PRK10683 102 SLQVAAISTLCCLLIGYPLAWAVAHSKPSTRNILL---LLVILPSWTSFLIRVYAWMgilKNNGVLNnfllwlgvidqpl 178

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489612331 146 ----TYLAMIIPGAAFLIPTAIWLLRTYMLRIPRELEEAAYVDGASYFYTFRRVILPLAMPGIAVVSITTFIGA 215
Cdd:PRK10683 179 tilhTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPA 252
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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