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Conserved domains on  [gi|489660442|ref|WP_003564771|]
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YneF family protein [Lacticaseibacillus paracasei]

Protein Classification

YneF family protein( domain architecture ID 10007960)

YneF family protein similar to Lactococcus lactis UPF0154 protein YnbE

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YneF COG3763
Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];
1-69 3.57e-27

Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];


:

Pssm-ID: 442977  Cd Length: 71  Bit Score: 93.46  E-value: 3.57e-27
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489660442  1 MLITVLVGIIALLVGLAGGFFGARAYMKKYFQDNPPVNEEMLRTMMMQMGQKPSAKKLNQMMAQMKQAQ 69
Cdd:COG3763   3 TWLWILIIIVALLAGLAGGFFIARKYMKKYLKKNPPINEDMIRAMMMQMGQKPSEKKINQMMNQMKKQK 71
 
Name Accession Description Interval E-value
YneF COG3763
Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];
1-69 3.57e-27

Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];


Pssm-ID: 442977  Cd Length: 71  Bit Score: 93.46  E-value: 3.57e-27
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489660442  1 MLITVLVGIIALLVGLAGGFFGARAYMKKYFQDNPPVNEEMLRTMMMQMGQKPSAKKLNQMMAQMKQAQ 69
Cdd:COG3763   3 TWLWILIIIVALLAGLAGGFFIARKYMKKYLKKNPPINEDMIRAMMMQMGQKPSEKKINQMMNQMKKQK 71
UPF0154 pfam03672
Uncharacterized protein family (UPF0154); This family contains a set of short bacterial ...
 9-67 1.26e-23

Uncharacterized protein family (UPF0154); This family contains a set of short bacterial proteins of unknown function.


Pssm-ID: 427437  Cd Length: 60  Bit Score: 84.19  E-value: 1.26e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 489660442   9 IIALLVGLAGGFFGARAYMKKYFQDNPPVNEEMLRTMMMQMGQKPSAKKLNQMMAQMKQ 67
Cdd:pfam03672  2 ILALIVGLVGGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKK 60
PRK01844 PRK01844
YneF family protein;
1-70 1.15e-17

YneF family protein;


Pssm-ID: 100947  Cd Length: 72  Bit Score: 69.27  E-value: 1.15e-17
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489660442  1 MLITVLVGIIALLVGLAGGFFGARAYMKKYFQDNPPVNEEMLRTMMMQMGQKPSAKKLNQMMAQMKQAQR 70
Cdd:PRK01844  3 IWLGILVGVVALVAGVALGFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMNKQQM 72
 
Name Accession Description Interval E-value
YneF COG3763
Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];
1-69 3.57e-27

Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];


Pssm-ID: 442977  Cd Length: 71  Bit Score: 93.46  E-value: 3.57e-27
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489660442  1 MLITVLVGIIALLVGLAGGFFGARAYMKKYFQDNPPVNEEMLRTMMMQMGQKPSAKKLNQMMAQMKQAQ 69
Cdd:COG3763   3 TWLWILIIIVALLAGLAGGFFIARKYMKKYLKKNPPINEDMIRAMMMQMGQKPSEKKINQMMNQMKKQK 71
UPF0154 pfam03672
Uncharacterized protein family (UPF0154); This family contains a set of short bacterial ...
 9-67 1.26e-23

Uncharacterized protein family (UPF0154); This family contains a set of short bacterial proteins of unknown function.


Pssm-ID: 427437  Cd Length: 60  Bit Score: 84.19  E-value: 1.26e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 489660442   9 IIALLVGLAGGFFGARAYMKKYFQDNPPVNEEMLRTMMMQMGQKPSAKKLNQMMAQMKQ 67
Cdd:pfam03672  2 ILALIVGLVGGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKK 60
PRK01844 PRK01844
YneF family protein;
1-70 1.15e-17

YneF family protein;


Pssm-ID: 100947  Cd Length: 72  Bit Score: 69.27  E-value: 1.15e-17
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489660442  1 MLITVLVGIIALLVGLAGGFFGARAYMKKYFQDNPPVNEEMLRTMMMQMGQKPSAKKLNQMMAQMKQAQR 70
Cdd:PRK01844  3 IWLGILVGVVALVAGVALGFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMNKQQM 72
PRK00523 PRK00523
hypothetical protein; Provisional
 3-69 1.60e-13

hypothetical protein; Provisional


Pssm-ID: 179056  Cd Length: 72  Bit Score: 58.95  E-value: 1.60e-13
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489660442  3 ITVLVGIIALLVGLAGGFFGARAYMKKYFQDNPPVNEEMLRTMMMQMGQKPSAKKLNQMMAQMKQAQ 69
Cdd:PRK00523  6 LALGLGIPLLIVGGIIGYFVSKKMFKKQIRENPPITENMIRAMYMQMGRKPSESQIKQVMRSVKNAK 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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