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Conserved domains on  [gi|489661662|ref|WP_003565981|]
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phosphoribosylformylglycinamidine synthase subunit PurQ [Lacticaseibacillus paracasei]

Protein Classification

phosphoribosylformylglycinamidine synthase subunit PurQ( domain architecture ID 10012055)

phosphoribosylformylglycinamidine synthase subunit PurQ is part of the complex that catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate; subunit PurQ produces an ammonia molecule by converting glutamine to glutamate

CATH:  3.40.50.880
Gene Ontology:  GO:0005524|GO:0004642
PubMed:  10387030
SCOP:  3001405

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK03619 PRK03619
phosphoribosylformylglycinamidine synthase subunit PurQ;
1-217 4.67e-149

phosphoribosylformylglycinamidine synthase subunit PurQ;


:

Pssm-ID: 235140 [Multi-domain]  Cd Length: 219  Bit Score: 413.36  E-value: 4.67e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   1 MKAAVISFPGSNCDLDLQWAVRDIAGAECDLIKPTQTDLTAYDVVMVPGGFSYGDYLRSGAIARFSPVMDALKQFAAAGG 80
Cdd:PRK03619   1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKETDLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGK 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662  81 YVIGICNGFQILTEAGLLPGALQWNRDLNFICEPVALTVENAGTAFSNQYQVGEHLTLPIAHGEGNYYADPETLAALETN 160
Cdd:PRK03619  81 PVLGICNGFQILTEAGLLPGALTRNASLKFICRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGN 160
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 489661662 161 GQVVFRYAD-NPNGSMHDIAGVTNETGNVLGMMPHPERAVEALLGGTDGLGVFQSLIN 217
Cdd:PRK03619 161 GQVVFRYCDeNPNGSVNDIAGIVNEKGNVLGMMPHPERAVEPLLGSTDGLKLFESLLK 218
 
Name Accession Description Interval E-value
PRK03619 PRK03619
phosphoribosylformylglycinamidine synthase subunit PurQ;
1-217 4.67e-149

phosphoribosylformylglycinamidine synthase subunit PurQ;


Pssm-ID: 235140 [Multi-domain]  Cd Length: 219  Bit Score: 413.36  E-value: 4.67e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   1 MKAAVISFPGSNCDLDLQWAVRDIAGAECDLIKPTQTDLTAYDVVMVPGGFSYGDYLRSGAIARFSPVMDALKQFAAAGG 80
Cdd:PRK03619   1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKETDLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGK 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662  81 YVIGICNGFQILTEAGLLPGALQWNRDLNFICEPVALTVENAGTAFSNQYQVGEHLTLPIAHGEGNYYADPETLAALETN 160
Cdd:PRK03619  81 PVLGICNGFQILTEAGLLPGALTRNASLKFICRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGN 160
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 489661662 161 GQVVFRYAD-NPNGSMHDIAGVTNETGNVLGMMPHPERAVEALLGGTDGLGVFQSLIN 217
Cdd:PRK03619 161 GQVVFRYCDeNPNGSVNDIAGIVNEKGNVLGMMPHPERAVEPLLGSTDGLKLFESLLK 218
PurL2 COG0047
Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain ...
1-217 2.32e-125

Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]; Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 439817 [Multi-domain]  Cd Length: 236  Bit Score: 354.36  E-value: 2.32e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   1 MKAAVISFPGSNCDLDLQWAVRDiAGAECDLI--KPTQTDLTAYDVVMVPGGFSYGDYLRSGAIARFSPVMDALKQFAAA 78
Cdd:COG0047    1 PKVAILVFPGSNCDRDMAAAFER-AGAEAEDVwhSDLRTDLDDFDGLVLPGGFSYGDYLRAGAIAAFSPIMDAVREFARR 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662  79 GGYVIGICNGFQILTEAGLLPG---ALQWNRDLNFICEPVALTVENAGTAFSNQYQVGEHLTLPIAHGEGNYYADPETLA 155
Cdd:COG0047   80 GGLVLGICNGFQILTELGLLPGiwpALTRNRSLRFICRWVYLRVENNDSPFTSGMEAGEVIPIPIAHGEGRYVADEETLA 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489661662 156 ALETNGQVVFRYAD---------NPNGSMHDIAGVTNETGNVLGMMPHPERAVEALLG---GTDGLGVFQSLIN 217
Cdd:COG0047  160 ELEANGQVAFRYVDadgnvtypaNPNGSLNNIAGITNEDGNVLGMMPHPERAVEPLLGpgeSTDGLRIFRSAVK 233
FGAM_synth_I TIGR01737
phosphoribosylformylglycinamidine synthase I; In some species, ...
1-216 1.12e-113

phosphoribosylformylglycinamidine synthase I; In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273782 [Multi-domain]  Cd Length: 227  Bit Score: 324.33  E-value: 1.12e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662    1 MKAAVISFPGSNCDLDLQWAVRdIAGAECDLIKPTQTDLTAYDVVMVPGGFSYGDYLRSGAIARFSPVMDALKQFAAAGG 80
Cdd:TIGR01737   1 MKVAVIRFPGTNCDRDTVYALR-LLGVDAEIVWYEDGSLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   81 YVIGICNGFQILTEAGLLPGALQWNRDLNFICEPVALTVENAGTAFSNQYQVGEHLTLPIAHGEGNYYADPETLAALETN 160
Cdd:TIGR01737  80 PVLGICNGFQILVEAGLLPGALLPNDSLRFICRWVYLRVENADTIFTKNYKKGEVIRIPIAHGEGRYYADDETLARLESN 159
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489661662  161 GQVVFRYAD---------NPNGSMHDIAGVTNETGNVLGMMPHPERAVEALLGGTDGLGVFQSLI 216
Cdd:TIGR01737 160 DQVVFRYCDedgdvaeeaNPNGSVGNIAGIVNERGNVLGMMPHPERASEKLLGGDDGLKLFESLV 224
GATase1_FGAR_AT cd01740
Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ...
3-216 2.06e-102

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase; Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site


Pssm-ID: 153211 [Multi-domain]  Cd Length: 238  Bit Score: 296.06  E-value: 2.06e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   3 AAVISFPGSNCDLDLQWAVRDiAGAECDL-----IKPTQTDLTAYDVVMVPGGFSYGDYLRSGAIARFSP-VMDALKQFA 76
Cdd:cd01740    1 VAVLRFPGSNCDRDMAYAFEL-AGFEAEDvwhndLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPlLMEEVKEFA 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662  77 AAGGYVIGICNGFQILTEAGLLPGALQWNRDLNFICEP----VALTVENAGTAFSNQYQVGEHLTLPIAHGEGNYYADPE 152
Cdd:cd01740   80 ERGGLVLGICNGFQILVELGLLPGALIRNKGLKFICRWqnrfVTLRVENNDSPFTKGYMEGEVLRIPVAHGEGRFYADDE 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489661662 153 TLAALETNGQVVF----------RYADNPNGSMHDIAGVTNETGNVLGMMPHPERAVEA-----LLGGTDGLGVFQSLI 216
Cdd:cd01740  160 TLAELEENGQIAQyvdddgnvteRYPANPNGSLDGIAGICNEDGRVLGMMPHPERAVEPwqwerLLGGSDGLKLFRNAV 238
GATase_5 pfam13507
CobB/CobQ-like glutamine amidotransferase domain; This family captures members that are not ...
2-217 3.53e-59

CobB/CobQ-like glutamine amidotransferase domain; This family captures members that are not found in pfam00310, pfam07685 and pfam13230.


Pssm-ID: 463904 [Multi-domain]  Cd Length: 260  Bit Score: 186.94  E-value: 3.53e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662    2 KAAVISFPGSNCDLDLQWAVRDiAGAEC------DLIkPTQTDLTAYDVVMVPGGFSYGDYLRSG-AIA---RFSP-VMD 70
Cdd:pfam13507   3 RVAILREPGTNGEYEMAAAFER-AGFDAvdvhmsDLL-SGRVSLDDFQGLAAPGGFSYGDVLGSGkGWAasiLFNPkLRD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   71 ALKQF-AAAGGYVIGICNGFQILTEAGLLPG----------ALQWNRDLNFICEPVALTVENAGTAFSNQyqVGEHLTLP 139
Cdd:pfam13507  81 AFEAFfNRPDTFSLGICNGCQLLSKLGLIPGgegdlaerwpTLTRNDSGRFESRWVNVKISEKSPSVFLR--GMDGSGLP 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662  140 IAHGEGN-YYADPETLAALETNGQVVFRYAD-----------NPNGSMHDIAGVTNETGNVLGMMPHPERAV-------- 199
Cdd:pfam13507 159 VAHGEGRfVFRSEEVLARLEANGQVALRYVDnagnpteeypfNPNGSPLGIAGICSPDGRVLGLMPHPERVFrpwqwphw 238
                         250       260
                  ....*....|....*....|
gi 489661662  200 --EALLGGTDGLGVFQSLIN 217
Cdd:pfam13507 239 ppGEWEEVSPWLRLFRNARK 258
 
Name Accession Description Interval E-value
PRK03619 PRK03619
phosphoribosylformylglycinamidine synthase subunit PurQ;
1-217 4.67e-149

phosphoribosylformylglycinamidine synthase subunit PurQ;


Pssm-ID: 235140 [Multi-domain]  Cd Length: 219  Bit Score: 413.36  E-value: 4.67e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   1 MKAAVISFPGSNCDLDLQWAVRDIAGAECDLIKPTQTDLTAYDVVMVPGGFSYGDYLRSGAIARFSPVMDALKQFAAAGG 80
Cdd:PRK03619   1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKETDLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGK 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662  81 YVIGICNGFQILTEAGLLPGALQWNRDLNFICEPVALTVENAGTAFSNQYQVGEHLTLPIAHGEGNYYADPETLAALETN 160
Cdd:PRK03619  81 PVLGICNGFQILTEAGLLPGALTRNASLKFICRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGN 160
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 489661662 161 GQVVFRYAD-NPNGSMHDIAGVTNETGNVLGMMPHPERAVEALLGGTDGLGVFQSLIN 217
Cdd:PRK03619 161 GQVVFRYCDeNPNGSVNDIAGIVNEKGNVLGMMPHPERAVEPLLGSTDGLKLFESLLK 218
PurL2 COG0047
Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain ...
1-217 2.32e-125

Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]; Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 439817 [Multi-domain]  Cd Length: 236  Bit Score: 354.36  E-value: 2.32e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   1 MKAAVISFPGSNCDLDLQWAVRDiAGAECDLI--KPTQTDLTAYDVVMVPGGFSYGDYLRSGAIARFSPVMDALKQFAAA 78
Cdd:COG0047    1 PKVAILVFPGSNCDRDMAAAFER-AGAEAEDVwhSDLRTDLDDFDGLVLPGGFSYGDYLRAGAIAAFSPIMDAVREFARR 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662  79 GGYVIGICNGFQILTEAGLLPG---ALQWNRDLNFICEPVALTVENAGTAFSNQYQVGEHLTLPIAHGEGNYYADPETLA 155
Cdd:COG0047   80 GGLVLGICNGFQILTELGLLPGiwpALTRNRSLRFICRWVYLRVENNDSPFTSGMEAGEVIPIPIAHGEGRYVADEETLA 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489661662 156 ALETNGQVVFRYAD---------NPNGSMHDIAGVTNETGNVLGMMPHPERAVEALLG---GTDGLGVFQSLIN 217
Cdd:COG0047  160 ELEANGQVAFRYVDadgnvtypaNPNGSLNNIAGITNEDGNVLGMMPHPERAVEPLLGpgeSTDGLRIFRSAVK 233
FGAM_synth_I TIGR01737
phosphoribosylformylglycinamidine synthase I; In some species, ...
1-216 1.12e-113

phosphoribosylformylglycinamidine synthase I; In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273782 [Multi-domain]  Cd Length: 227  Bit Score: 324.33  E-value: 1.12e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662    1 MKAAVISFPGSNCDLDLQWAVRdIAGAECDLIKPTQTDLTAYDVVMVPGGFSYGDYLRSGAIARFSPVMDALKQFAAAGG 80
Cdd:TIGR01737   1 MKVAVIRFPGTNCDRDTVYALR-LLGVDAEIVWYEDGSLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   81 YVIGICNGFQILTEAGLLPGALQWNRDLNFICEPVALTVENAGTAFSNQYQVGEHLTLPIAHGEGNYYADPETLAALETN 160
Cdd:TIGR01737  80 PVLGICNGFQILVEAGLLPGALLPNDSLRFICRWVYLRVENADTIFTKNYKKGEVIRIPIAHGEGRYYADDETLARLESN 159
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489661662  161 GQVVFRYAD---------NPNGSMHDIAGVTNETGNVLGMMPHPERAVEALLGGTDGLGVFQSLI 216
Cdd:TIGR01737 160 DQVVFRYCDedgdvaeeaNPNGSVGNIAGIVNERGNVLGMMPHPERASEKLLGGDDGLKLFESLV 224
GATase1_FGAR_AT cd01740
Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ...
3-216 2.06e-102

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase; Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site


Pssm-ID: 153211 [Multi-domain]  Cd Length: 238  Bit Score: 296.06  E-value: 2.06e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   3 AAVISFPGSNCDLDLQWAVRDiAGAECDL-----IKPTQTDLTAYDVVMVPGGFSYGDYLRSGAIARFSP-VMDALKQFA 76
Cdd:cd01740    1 VAVLRFPGSNCDRDMAYAFEL-AGFEAEDvwhndLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPlLMEEVKEFA 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662  77 AAGGYVIGICNGFQILTEAGLLPGALQWNRDLNFICEP----VALTVENAGTAFSNQYQVGEHLTLPIAHGEGNYYADPE 152
Cdd:cd01740   80 ERGGLVLGICNGFQILVELGLLPGALIRNKGLKFICRWqnrfVTLRVENNDSPFTKGYMEGEVLRIPVAHGEGRFYADDE 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489661662 153 TLAALETNGQVVF----------RYADNPNGSMHDIAGVTNETGNVLGMMPHPERAVEA-----LLGGTDGLGVFQSLI 216
Cdd:cd01740  160 TLAELEENGQIAQyvdddgnvteRYPANPNGSLDGIAGICNEDGRVLGMMPHPERAVEPwqwerLLGGSDGLKLFRNAV 238
PRK01175 PRK01175
phosphoribosylformylglycinamidine synthase I; Provisional
1-221 2.70e-60

phosphoribosylformylglycinamidine synthase I; Provisional


Pssm-ID: 234913 [Multi-domain]  Cd Length: 261  Bit Score: 189.97  E-value: 2.70e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   1 MKAAVISFPGSNCDLDLQWAVRDiAGAECD-----LIKPTQTDLTAYDVVMVPGGFSYGDYLRSGAI--ARFSPV-MDAL 72
Cdd:PRK01175   4 IRVAVLRMEGTNCEDETVKAFRR-LGVEPEyvhinDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIfaARLKAVlRKDI 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662  73 KQFAAAGGYVIGICNGFQILTEAGLLPG----------ALQWNRDLNFICEPVALTVENAGTAFSNQYQvGEHLTLPIAH 142
Cdd:PRK01175  83 EEFIDEGYPIIGICNGFQVLVELGLLPGfdeiaekpemALTVNESNRFECRPTYLKKENRKCIFTKLLK-KDVFQVPVAH 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662 143 GEGN-YYADPETLAALETNGQVVFRYAD----------NPNGSMHDIAGVTNETGNVLGMMPHPERA--------VEALL 203
Cdd:PRK01175 162 AEGRvVFSEEEILERLIENDQIVFRYVDengnyagypwNPNGSIYNIAGITNEKGNVIGLMPHPERAfygyqhpyWEKEE 241
                        250
                 ....*....|....*...
gi 489661662 204 GGTDGLGVFQSLINQTEG 221
Cdd:PRK01175 242 DYGDGKIFFDSLINYLRK 259
GATase_5 pfam13507
CobB/CobQ-like glutamine amidotransferase domain; This family captures members that are not ...
2-217 3.53e-59

CobB/CobQ-like glutamine amidotransferase domain; This family captures members that are not found in pfam00310, pfam07685 and pfam13230.


Pssm-ID: 463904 [Multi-domain]  Cd Length: 260  Bit Score: 186.94  E-value: 3.53e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662    2 KAAVISFPGSNCDLDLQWAVRDiAGAEC------DLIkPTQTDLTAYDVVMVPGGFSYGDYLRSG-AIA---RFSP-VMD 70
Cdd:pfam13507   3 RVAILREPGTNGEYEMAAAFER-AGFDAvdvhmsDLL-SGRVSLDDFQGLAAPGGFSYGDVLGSGkGWAasiLFNPkLRD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   71 ALKQF-AAAGGYVIGICNGFQILTEAGLLPG----------ALQWNRDLNFICEPVALTVENAGTAFSNQyqVGEHLTLP 139
Cdd:pfam13507  81 AFEAFfNRPDTFSLGICNGCQLLSKLGLIPGgegdlaerwpTLTRNDSGRFESRWVNVKISEKSPSVFLR--GMDGSGLP 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662  140 IAHGEGN-YYADPETLAALETNGQVVFRYAD-----------NPNGSMHDIAGVTNETGNVLGMMPHPERAV-------- 199
Cdd:pfam13507 159 VAHGEGRfVFRSEEVLARLEANGQVALRYVDnagnpteeypfNPNGSPLGIAGICSPDGRVLGLMPHPERVFrpwqwphw 238
                         250       260
                  ....*....|....*....|
gi 489661662  200 --EALLGGTDGLGVFQSLIN 217
Cdd:pfam13507 239 ppGEWEEVSPWLRLFRNARK 258
FGAM_synt TIGR01735
phosphoribosylformylglycinamidine synthase, single chain form; This model represents a ...
2-201 3.10e-29

phosphoribosylformylglycinamidine synthase, single chain form; This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 188163 [Multi-domain]  Cd Length: 1310  Bit Score: 114.88  E-value: 3.10e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662     2 KAAVISFPGSNCDLDLQWAVrDIAGAECdlIKPTQTDLTAYDV-------VMVPGGFSYGDYLRSG----AIARFSPVmd 70
Cdd:TIGR01735 1057 KVAILREQGVNGDREMAAAF-DRAGFEA--WDVHMSDLLAGRVhldefrgLAACGGFSYGDVLGAGkgwaKSILFNPR-- 1131
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662    71 ALKQFAA----AGGYVIGICNGFQILTE-AGLLPGALQW-----NRDLNFICEPVALTVENAGTAFSNQYQvGEHLTLPI 140
Cdd:TIGR01735 1132 LRDQFQAffkrPDTFSLGVCNGCQMLSNlLEWIPGTENWphfvrNNSERFEARVASVRVGESPSIMLRGMA-GSRLPVAV 1210
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489661662   141 AHGEGN-YYADPETLAALETNGQVVFRYAD-----------NPNGSMHDIAGVTNETGNVLGMMPHPERAVEA 201
Cdd:TIGR01735 1211 AHGEGYaAFSSPELQAQADASGLAALRYIDddgnpteayplNPNGSPGGIAGITSCDGRVTIMMPHPERVFRA 1283
PRK05297 PRK05297
phosphoribosylformylglycinamidine synthase; Provisional
2-199 3.01e-25

phosphoribosylformylglycinamidine synthase; Provisional


Pssm-ID: 235394 [Multi-domain]  Cd Length: 1290  Bit Score: 103.34  E-value: 3.01e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662    2 KAAVISFPGSNCDLDLQWAVrDIAGAEC------DLIKpTQTDLTAYDVVMVPGGFSYGDYLRSG-----AIaRFSPVM- 69
Cdd:PRK05297 1037 KVAILREQGVNSHVEMAAAF-DRAGFDAidvhmsDLLA-GRVTLEDFKGLVACGGFSYGDVLGAGegwakSI-LFNPRLr 1113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   70 DALKQF-AAAGGYVIGICNGFQILTE-AGLLPGALQW-----NRDLNFICEPVALTVEN------AGTAfsnqyqvGEHL 136
Cdd:PRK05297 1114 DQFEAFfARPDTFALGVCNGCQMMSNlKEIIPGAEHWprfvrNRSEQFEARFSLVEVQEspsiflQGMA-------GSRL 1186
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489661662  137 TLPIAHGEGNYYADPETLAALETNGQVVFRYAD-----------NPNGSMHDIAGVTNETGNVLGMMPHPERAV 199
Cdd:PRK05297 1187 PIAVAHGEGRAEFPDAHLAALEAKGLVALRYVDnhgqvtetypaNPNGSPNGITGLTTADGRVTIMMPHPERVF 1260
PLN03206 PLN03206
phosphoribosylformylglycinamidine synthase; Provisional
2-198 1.32e-19

phosphoribosylformylglycinamidine synthase; Provisional


Pssm-ID: 178745 [Multi-domain]  Cd Length: 1307  Bit Score: 87.13  E-value: 1.32e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662    2 KAAVISFPGSNCDLDLQWAVRdIAGAE------CDLIKPTQTDLTAYDVVMVpGGFSYGDYLRSG----AIARFSPVMda 71
Cdd:PLN03206 1039 KVAIIREEGSNGDREMAAAFY-AAGFEpwdvtmSDLLNGRISLDDFRGIVFV-GGFSYADVLDSAkgwaGSIRFNEPL-- 1114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   72 LKQFAA----AGGYVIGICNGFQILTEAGLLPGA----------------LQWNRDLNFICEPVALTVENAgTAFSNQYQ 131
Cdd:PLN03206 1115 LQQFQEfynrPDTFSLGVCNGCQLMALLGWVPGPqvggglgaggdpsqprFVHNESGRFECRFTSVTIEDS-PAIMLKGM 1193
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489661662  132 VGEHLTLPIAHGEGN-YYADPETLAALETNGQVVFRYAD-----------NPNGSMHDIAGVTNETGNVLGMMPHPERA 198
Cdd:PLN03206 1194 EGSTLGVWAAHGEGRaYFPDESVLDEVLKSNLAPVRYCDddgepteqypfNPNGSPLGIAALCSPDGRHLAMMPHPERC 1272
GATase1 cd01653
Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase ...
4-92 2.23e-10

Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.


Pssm-ID: 153210 [Multi-domain]  Cd Length: 115  Bit Score: 56.07  E-value: 2.23e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   4 AVISFPGSNC-DLDLQWAVRDIAGAECDLIKPT------QTDLTAYDVVMVPGGFSYGDYLRsgaiaRFSPVMDALKQFA 76
Cdd:cd01653    2 AVLLFPGFEElELASPLDALREAGAEVDVVSPDggpvesDVDLDDYDGLILPGGPGTPDDLA-----RDEALLALLREAA 76
                         90
                 ....*....|....*.
gi 489661662  77 AAGGYVIGICNGFQIL 92
Cdd:cd01653   77 AAGKPILGICLGAQLL 92
GAT_1 cd03128
Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase ...
4-92 9.83e-10

Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain.


Pssm-ID: 153222 [Multi-domain]  Cd Length: 92  Bit Score: 53.74  E-value: 9.83e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   4 AVISFPGSNC-DLDLQWAVRDIAGAECDLIKPT------QTDLTAYDVVMVPGGFSYGDYLRsgaiaRFSPVMDALKQFA 76
Cdd:cd03128    2 AVLLFGGSEElELASPLDALREAGAEVDVVSPDggpvesDVDLDDYDGLILPGGPGTPDDLA-----WDEALLALLREAA 76
                         90
                 ....*....|....*.
gi 489661662  77 AAGGYVIGICNGFQIL 92
Cdd:cd03128   77 AAGKPVLGICLGAQLL 92
YajL COG0693
Protein/nucleotide deglycase, PfpI/YajL/DJ-1 family (repair of methylglyoxal-glycated proteins ...
32-100 5.80e-08

Protein/nucleotide deglycase, PfpI/YajL/DJ-1 family (repair of methylglyoxal-glycated proteins and nucleic acids) [Defense mechanisms];


Pssm-ID: 440457 [Multi-domain]  Cd Length: 170  Bit Score: 50.87  E-value: 5.80e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489661662  32 IKPTQTDLTAYDVVMVPGGFSYGDYLRsgaiaRFSPVMDALKQFAAAGGYVIGICNGFQILTEAGLLPG 100
Cdd:COG0693   55 KTLDDVDPDDYDALVLPGGHGAPDDLR-----EDPDVVALVREFYEAGKPVAAICHGPAVLAAAGLLKG 118
GATase1_CobQ cd01750
Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ); Type ...
26-92 2.12e-07

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ); Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.


Pssm-ID: 153221 [Multi-domain]  Cd Length: 194  Bit Score: 49.55  E-value: 2.12e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662  26 GAECDLIKPTQtDLTAYDVVMVPGGFSYG---DYLRSGAIArfspvmDALKQFAAAGGYVIGICNGFQIL 92
Cdd:cd01750   23 GVDVRYVEVPE-GLGDADLIILPGSKDTIqdlAWLRKRGLA------EAIKNYARAGGPVLGICGGYQML 85
DJ-1_PfpI pfam01965
DJ-1/PfpI family; The family includes the protease PfpI. This domain is also found in ...
41-100 2.52e-07

DJ-1/PfpI family; The family includes the protease PfpI. This domain is also found in transcriptional regulators.


Pssm-ID: 396514 [Multi-domain]  Cd Length: 165  Bit Score: 48.79  E-value: 2.52e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   41 AYDVVMVPGGFSYGDYLRsgaiaRFSPVMDALKQFAAAGGYVIGICNGFQILTEAGLLPG 100
Cdd:pfam01965  61 DYDALVLPGGRAGPERLR-----DNEKLVEFVKDFYEKGKPVAAICHGPQVLAAAGVLKG 115
GATase1_DJ-1 cd03135
Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1; Type 1 glutamine ...
35-100 5.24e-07

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1; Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme.


Pssm-ID: 153229 [Multi-domain]  Cd Length: 163  Bit Score: 47.93  E-value: 5.24e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489661662  35 TQTDLTAYDVVMVPGGFSYGDYLRSGaiarfSPVMDALKQFAAAGGYVIGICNGFQILTEAGLLPG 100
Cdd:cd03135   54 SDVNLDDYDAIVIPGGLPGAQNLADN-----EKLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKG 114
GATase_3 pfam07685
CobB/CobQ-like glutamine amidotransferase domain;
42-94 1.01e-06

CobB/CobQ-like glutamine amidotransferase domain;


Pssm-ID: 429595 [Multi-domain]  Cd Length: 189  Bit Score: 47.62  E-value: 1.01e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 489661662   42 YDVVMVPGGFsygDYLRSGAIARFSPVMDALKQFAAAGGYVIGICNGFQILTE 94
Cdd:pfam07685  43 ADLIILPGGK---PTIQDLALLRNSGMDEAIKEAAEDGGPVLGICGGYQMLGE 92
GATase1_AraC_2 cd03138
AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like ...
38-100 3.82e-06

AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain; A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.


Pssm-ID: 153232 [Multi-domain]  Cd Length: 195  Bit Score: 46.10  E-value: 3.82e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489661662  38 DLTAYDVVMVPGgFSYGDylRSGAIARFSPVMDALKQFAAAGGYVIGICNGFQILTEAGLLPG 100
Cdd:cd03138   66 DVPAPDLVIVPG-LGGDP--DELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDG 125
GATase1_PfpI_like cd03134
A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus ...
42-100 3.96e-06

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus; A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.


Pssm-ID: 153228 [Multi-domain]  Cd Length: 165  Bit Score: 45.61  E-value: 3.96e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 489661662  42 YDVVMVPGGFSyGDYLRsgaiaRFSPVMDALKQFAAAGGYVIGICNGFQILTEAGLLPG 100
Cdd:cd03134   63 YDALVIPGGTN-PDKLR-----RDPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRG 115
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
38-98 8.69e-06

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 45.53  E-value: 8.69e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489661662  38 DLTAYDVVMVPGGFSYgdylrsgAIARFSPVMDALKQFAAAGGYVIGICNGFQILTEAGLL 98
Cdd:COG4977   63 DLAAADTLIVPGGLDP-------AAAADPALLAWLRRAAARGARLASICTGAFLLAAAGLL 116
CobQ COG1492
Cobyric acid synthase [Coenzyme transport and metabolism]; Cobyric acid synthase is part of ...
4-92 1.91e-05

Cobyric acid synthase [Coenzyme transport and metabolism]; Cobyric acid synthase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441101 [Multi-domain]  Cd Length: 493  Bit Score: 44.66  E-value: 1.91e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   4 AVISFPG-SN-CDLDlqwAVRDIAGAECDLIKPTQtDLTAYDVVMVPGgfS---YGD--YLRSGAIArfspvmDALKQFA 76
Cdd:COG1492  255 AVIRLPRiSNfTDFD---PLAAEPGVRLRYVRPPE-ELGDADLVILPG--SkntIADlaWLRESGLD------DAIRAHA 322
                         90
                 ....*....|....*.
gi 489661662  77 AAGGYVIGICNGFQIL 92
Cdd:COG1492  323 RRGGPVLGICGGYQML 338
PRK00784 PRK00784
cobyric acid synthase;
4-92 4.38e-05

cobyric acid synthase;


Pssm-ID: 234838 [Multi-domain]  Cd Length: 488  Bit Score: 43.92  E-value: 4.38e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662   4 AVISFPG-SN-CDLDlqwAVRDIAGAECDLIKPTQtDLTAYDVVMVPGgfS---YGD--YLRSGAIArfspvmDALKQFA 76
Cdd:PRK00784 255 AVIRLPRiSNfTDFD---PLRAEPGVDVRYVRPGE-PLPDADLVILPG--SkntIADlaWLRESGWD------EAIRAHA 322
                         90
                 ....*....|....*.
gi 489661662  77 AAGGYVIGICNGFQIL 92
Cdd:PRK00784 323 RRGGPVLGICGGYQML 338
GATase1_AraC_1 cd03137
AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like ...
38-100 3.17e-04

AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain; A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.


Pssm-ID: 153231 [Multi-domain]  Cd Length: 187  Bit Score: 40.18  E-value: 3.17e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489661662  38 DLTAYDVVMVPGGFSYGdylrsgAIARFSPVMDALKQFAAAGGYVIGICNGFQILTEAGLLPG 100
Cdd:cd03137   61 ALAAADTVIVPGGPDVD------GRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDG 117
GATase1_AraC_ArgR_like cd03136
AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase ...
37-100 5.75e-04

AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain; A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.


Pssm-ID: 153230 [Multi-domain]  Cd Length: 185  Bit Score: 39.49  E-value: 5.75e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489661662  37 TDLTAYDVVMVPGGFSYGDYLRSGAIArfspvmdALKQFAAAGGYVIGICNGFQILTEAGLLPG 100
Cdd:cd03136   60 EDAPPLDYLFVVGGLGARRAVTPALLA-------WLRRAARRGVALGGIDTGAFLLARAGLLDG 116
hisH PRK13141
imidazole glycerol phosphate synthase subunit HisH; Provisional
25-197 5.81e-04

imidazole glycerol phosphate synthase subunit HisH; Provisional


Pssm-ID: 237288 [Multi-domain]  Cd Length: 205  Bit Score: 39.73  E-value: 5.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662  25 AGAECDLIKpTQTDLTAYDVVMVPGGFSYGD---YLRSGAIArfspvmDALKQFAAAGGYVIGICNGFQILTEA------ 95
Cdd:PRK13141  22 LGAEAVITS-DPEEILAADGVILPGVGAFPDamaNLRERGLD------EVIKEAVASGKPLLGICLGMQLLFESseefge 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662  96 ----GLLPGALQ--------------WNRdLNFICEPVALTVENAGTAFsnqYQVgehltlpiaHGegnYYA---DPETL 154
Cdd:PRK13141  95 teglGLLPGRVRrfppeeglkvphmgWNQ-LELKKESPLLKGIPDGAYV---YFV---------HS---YYAdpcDEEYV 158
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 489661662 155 AALETNGQ----VVFRyadnpngsmhdiagvtnetGNVLGMMPHPER 197
Cdd:PRK13141 159 AATTDYGVefpaAVGK-------------------DNVFGAQFHPEK 186
GATase1_PfpI_2 cd03139
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins ...
37-100 1.30e-03

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus; Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.


Pssm-ID: 153233 [Multi-domain]  Cd Length: 183  Bit Score: 38.29  E-value: 1.30e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489661662  37 TDLTAYDVVMVPGGfsYGDYLrsgAIARfSPVMDALKQFAAAGGYVIGICNGFQILTEAGLLPG 100
Cdd:cd03139   58 ADPPDLDVLLVPGG--GGTRA---LVND-PALLDFIRRQAARAKYVTSVCTGALLLAAAGLLDG 115
COG3442 COG3442
Glutamine amidotransferase related to the GATase domain of CobQ [General function prediction ...
38-92 1.76e-03

Glutamine amidotransferase related to the GATase domain of CobQ [General function prediction only];


Pssm-ID: 442666 [Multi-domain]  Cd Length: 241  Bit Score: 38.23  E-value: 1.76e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489661662  38 DLTAYDVVMVPGGfsyGDYLRSGAIARFSPVMDALKQFAAAGGYVIGICNGFQIL 92
Cdd:COG3442   47 PFDDVDIVFIGGG---QDREQEIVADDLLRIKDALRAAIEDGVPVLAICGGYQLL 98
GATase1_PfpI_1 cd03169
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins ...
38-127 2.08e-03

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus; Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.


Pssm-ID: 153243 [Multi-domain]  Cd Length: 180  Bit Score: 37.63  E-value: 2.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662  38 DLTAYDVVMVPGGFSyGDYLRSGAiarfsPVMDALKQFAAAGGYVIGICNGFQILTEAGLLPGalqwnRDLN--FICEPV 115
Cdd:cd03169   73 DPDDYDALVIPGGRA-PEYLRLDE-----KVLAIVRHFAEANKPVAAICHGPQILAAAGVLKG-----RRCTayPACKPE 141
                         90
                 ....*....|..
gi 489661662 116 altVENAGTAFS 127
Cdd:cd03169  142 ---VELAGGTVV 150
PRK06278 PRK06278
cobyrinic acid a,c-diamide synthase; Validated
43-94 2.25e-03

cobyrinic acid a,c-diamide synthase; Validated


Pssm-ID: 180505 [Multi-domain]  Cd Length: 476  Bit Score: 38.48  E-value: 2.25e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 489661662  43 DVVMVPGGfsygDYLRSGAIARfspvmDALKQFAAAGGYVIGICNGFQILTE 94
Cdd:PRK06278  38 DGLIIPGG----SLVESGSLTD-----ELKKEILNFDGYIIGICSGFQILSE 80
GATase1_IGP_Synthase cd01748
Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate ...
25-100 6.78e-03

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS); Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.


Pssm-ID: 153219 [Multi-domain]  Cd Length: 198  Bit Score: 36.32  E-value: 6.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489661662  25 AGAECDLIKpTQTDLTAYDVVMVPGGFSYGDylrsgAIARF--SPVMDALKQFAAAGGYVIGICNGFQILTEA------- 95
Cdd:cd01748   21 LGAEVIITS-DPEEILSADKLILPGVGAFGD-----AMANLreRGLIEALKEAIASGKPFLGICLGMQLLFESseegggt 94

                 ....*...
gi 489661662  96 ---GLLPG 100
Cdd:cd01748   95 kglGLIPG 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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