|
Name |
Accession |
Description |
Interval |
E-value |
| FtsK |
COG1674 |
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ... |
347-830 |
0e+00 |
|
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441280 [Multi-domain] Cd Length: 611 Bit Score: 769.48 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 347 AAAEDTGSAPTGPTPGVSTLPPLKLLASPVKVDQAAQEDWVVAQSDRLDKTLQAFNVDAHVVAHTVGPTVTQFQVRLASG 426
Cdd:COG1674 118 LGALALLLLAAAEALALAVLPPLDLLDPPPPKKEKIDEEELEENARLLEETLEDFGVEAKVVGVTPGPVVTRYEIEPAPG 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 427 VKVNKITNLNDDLKLALAAKDIRIEAPIPGKNTVGIEIPNLKPRPVMLREVLDTPAFQQAKSPLTIALGVDLFGQPVVTN 506
Cdd:COG1674 198 VKVSKITNLADDIALALAAKSVRIEAPIPGKSAVGIEVPNKKRETVYLREVLESDEFQNSKSPLPIALGKDISGEPVVAD 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 507 LARMPHGLIAGATGSGKSVFINSLLVSLLYKATPEQVRLLLIDPKAVELAGYNGLPHLVSPVISDPKAASAALKWVVSTM 586
Cdd:COG1674 278 LAKMPHLLIAGATGSGKSVCINAMILSLLYKATPDEVRLILIDPKMVELSVYNGIPHLLTPVVTDPKKAANALKWAVREM 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 587 NDRYKKLAAAGVRNLEQFNAKAERF------HEYAQVLPYLVIIIDELADLMLAAGSEIQDDIARITAKARAAGIHLLVA 660
Cdd:COG1674 358 ERRYKLFAKAGVRNIAGYNEKVREAkakgeeEEGLEPLPYIVVIIDELADLMMVAGKEVEEAIARLAQKARAAGIHLILA 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 661 TQRPSVDVITGTIKNNIPTRIAFMTASQIDSRTIIDTAGAERLLGRGDMLYLGNGASQPIRLQGTFV-DHEIDAIVDYVK 739
Cdd:COG1674 438 TQRPSVDVITGLIKANIPSRIAFAVSSKIDSRTILDQGGAEKLLGRGDMLFLPPGASKPIRVQGAFVsDEEVERVVDFLK 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 740 ARRGPRYLFD--PAGLVKSAEASVSHEDELMPEVLDYLSGERHISTSKLQRVFSIGYNRAANLIDALEAKHLVSPAKGAK 817
Cdd:COG1674 518 SQGEPEYIEEilEEEEEEDEGGDDDEDDELFDEAVELVVETQKASTSLLQRRLRIGYNRAARLIDQMEERGIVGPAEGSK 597
|
490
....*....|...
gi 489666241 818 PREVYYSQAKKEE 830
Cdd:COG1674 598 PREVLVSPEELEE 610
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
356-821 |
1.04e-132 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 428.73 E-value: 1.04e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 356 PTGPTPGVSTLPPLKLLASPVkvDQAAQEdwvvaQSDRLDKT-LQAFNVDAHVVAHTVGPTVTQFQVRLASGVKVNKITN 434
Cdd:PRK10263 862 PTTPLPSLDLLTPPPSEVEPV--DTFALE-----QMARLVEArLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISN 934
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 435 LNDDLKLALAAKDIRIEAPIPGKNTVGIEIPNLKPRPVMLREVLDTPAFQQAKSPLTIALGVDLFGQPVVTNLARMPHGL 514
Cdd:PRK10263 935 LSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLL 1014
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 515 IAGATGSGKSVFINSLLVSLLYKATPEQVRLLLIDPKAVELAGYNGLPHLVSPVISDPKAASAALKWVVSTMNDRYKKLA 594
Cdd:PRK10263 1015 VAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMS 1094
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 595 AAGVRNLEQFN---AKAERF------------------HEYAQVLPYLVIIIDELADLMLAAGSEIQDDIARITAKARAA 653
Cdd:PRK10263 1095 ALGVRNLAGYNekiAEADRMmrpipdpywkpgdsmdaqHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAA 1174
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 654 GIHLLVATQRPSVDVITGTIKNNIPTRIAFMTASQIDSRTIIDTAGAERLLGRGDMLYLGNGASQPIRLQGTFV-DHEID 732
Cdd:PRK10263 1175 GIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVrDQEVH 1254
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 733 AIVDYVKARRGPRYLfdpAGLVKSAEAS--------VSHEDELMPEVLDYLSGERHISTSKLQRVFSIGYNRAANLIDAL 804
Cdd:PRK10263 1255 AVVQDWKARGRPQYV---DGITSDSESEggaggfdgAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQM 1331
|
490
....*....|....*..
gi 489666241 805 EAKHLVSPAKGAKPREV 821
Cdd:PRK10263 1332 EAQGIVSEQGHNGNREV 1348
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
474-665 |
1.02e-65 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 218.40 E-value: 1.02e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 474 LREVLDTPAFQQAKSPLTIALGVDLFGQPVVTNLARMP-HGLIAGATGSGKSVFINSLLVSLLYKATPEQVRLLLIDPKA 552
Cdd:pfam01580 1 LLEVLESKPFDTDYSRLPIALGKDISGNPEVFDLKKMPvHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 553 VELAGYNGLPHLVS-PVISDPKAASAALKWVVSTMNDRYKKLAAAGVRNLEQFNAKAERFHEYA---------------- 615
Cdd:pfam01580 81 GELSAYEDIPHLLSvPVATDPKRALRALEWLVDEMERRYALFRALGVRSIAGYNGEIAEDPLDGfgdvflviygvhvmct 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 489666241 616 -----QVLPYLVIIIDELADLMLAAGSEIQDD----IARITAKARAAGIHLLVATQRPS 665
Cdd:pfam01580 161 agrwlEILPYLVVIVDERAELRLAAPKDSEMRvedaIVRLAQKGRAAGIHLLLATQRPS 219
|
|
| T7SS_EccC_a |
TIGR03924 |
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ... |
490-727 |
1.07e-26 |
|
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274858 [Multi-domain] Cd Length: 658 Bit Score: 116.23 E-value: 1.07e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 490 LTIALGVDLFGQPVVTNL---AR--M-PHGLIAGATGSGKSVFINSLLVSLLYKATPEQVRLLLIDPK-AVELAGYNGLP 562
Cdd:TIGR03924 409 LRVPIGVGDDGEPVELDLkesAEggMgPHGLCIGATGSGKSELLRTLVLGLAATHSPEQLNLVLVDFKgGATFLGLEGLP 488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 563 HlVSPVISDpKAASAALkwvVSTMND--------RYKKLAAAG-VRNLEQFNAKAERFHEYAQvLPYLVIIIDELADLmL 633
Cdd:TIGR03924 489 H-VSAVITN-LADEAPL---VDRMQDalagemnrRQELLRAAGnFANVAEYEKARAAGADLPP-LPALFVVVDEFSEL-L 561
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 634 AAGSEIQDDIARITAKARAAGIHLLVATQRPSVDVITGtIKNNIPTRIAFMTASQIDSRTIIDTAGAERLLGRGDMLYLG 713
Cdd:TIGR03924 562 SQHPDFADLFVAIGRLGRSLGVHLLLASQRLDEGRLRG-LESHLSYRIGLKTFSASESRAVLGVPDAYHLPSTPGAGYLK 640
|
250
....*....|....
gi 489666241 714 NGASQPIRLQGTFV 727
Cdd:TIGR03924 641 VDTAEPVRFRAAYV 654
|
|
| Ftsk_gamma |
smart00843 |
This domain directs oriented DNA translocation and forms a winged helix structure; Mutated ... |
764-824 |
2.24e-22 |
|
This domain directs oriented DNA translocation and forms a winged helix structure; Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Pssm-ID: 197911 [Multi-domain] Cd Length: 63 Bit Score: 90.94 E-value: 2.24e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489666241 764 EDELMPEVLDYLSGERHISTSKLQRVFSIGYNRAANLIDALEAKHLVSPAKGAKPREVYYS 824
Cdd:smart00843 3 EDELYDEAVELVIETQKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGPANGSKPREVLVT 63
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
512-685 |
7.40e-10 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 58.00 E-value: 7.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 512 HGLIAGATGSGKSVFINSLLVSLLykatPEQVRLLLIDPKavelagynGLPHLVSPVISDPKAASAALkwVVSTMNDRYK 591
Cdd:cd01127 1 NTLVLGTTGSGKTTSIVIPLLDQA----ARGGSVIITDPK--------GELFLVIPDRDDSFAALRAL--FFNQLFRALT 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 592 KLAAAGVRNLEQFnakaerfheyaqvlpyLVIIIDELADLMlaagsEIqDDIARITAKARAAGIHLLVATQ------RPS 665
Cdd:cd01127 67 ELASLSPGRLPRR----------------VWFILDEFANLG-----RI-PNLPNLLATGRKRGISVVLILQslaqleAVY 124
|
170 180
....*....|....*....|
gi 489666241 666 VDVITGTIKNNIPTRIAFMT 685
Cdd:cd01127 125 GKDGAQTILGNCNTKLYLGT 144
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
124-368 |
7.91e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 43.24 E-value: 7.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 124 AVNHDISLTPSDTNTAKSTTSFIEKQDENEADRRANASKAPQEDTLLAEKSDEAGTQNQKPLDETlPEATAPSVAAKPVT 203
Cdd:PHA03307 52 AVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDP-PPPTPPPASPPPSP 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 204 PTDTHQLSSSTPATSAVEPQAKSAETEKKTLLTADEAEEAPASVNKPFVDSSSQSVINKPHAPNSRKAARiealRRKHAA 283
Cdd:PHA03307 131 APDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPA----AASPRP 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 284 KKLRRELAAQKAKAKQAQAEVQTSPKTSRPPSTTAETPSANDADYSTSALTQSPSTGILPSSMAAAEDTGSAPTGPTPGV 363
Cdd:PHA03307 207 PRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPAS 286
|
....*
gi 489666241 364 STLPP 368
Cdd:PHA03307 287 SSSSP 291
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FtsK |
COG1674 |
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ... |
347-830 |
0e+00 |
|
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441280 [Multi-domain] Cd Length: 611 Bit Score: 769.48 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 347 AAAEDTGSAPTGPTPGVSTLPPLKLLASPVKVDQAAQEDWVVAQSDRLDKTLQAFNVDAHVVAHTVGPTVTQFQVRLASG 426
Cdd:COG1674 118 LGALALLLLAAAEALALAVLPPLDLLDPPPPKKEKIDEEELEENARLLEETLEDFGVEAKVVGVTPGPVVTRYEIEPAPG 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 427 VKVNKITNLNDDLKLALAAKDIRIEAPIPGKNTVGIEIPNLKPRPVMLREVLDTPAFQQAKSPLTIALGVDLFGQPVVTN 506
Cdd:COG1674 198 VKVSKITNLADDIALALAAKSVRIEAPIPGKSAVGIEVPNKKRETVYLREVLESDEFQNSKSPLPIALGKDISGEPVVAD 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 507 LARMPHGLIAGATGSGKSVFINSLLVSLLYKATPEQVRLLLIDPKAVELAGYNGLPHLVSPVISDPKAASAALKWVVSTM 586
Cdd:COG1674 278 LAKMPHLLIAGATGSGKSVCINAMILSLLYKATPDEVRLILIDPKMVELSVYNGIPHLLTPVVTDPKKAANALKWAVREM 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 587 NDRYKKLAAAGVRNLEQFNAKAERF------HEYAQVLPYLVIIIDELADLMLAAGSEIQDDIARITAKARAAGIHLLVA 660
Cdd:COG1674 358 ERRYKLFAKAGVRNIAGYNEKVREAkakgeeEEGLEPLPYIVVIIDELADLMMVAGKEVEEAIARLAQKARAAGIHLILA 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 661 TQRPSVDVITGTIKNNIPTRIAFMTASQIDSRTIIDTAGAERLLGRGDMLYLGNGASQPIRLQGTFV-DHEIDAIVDYVK 739
Cdd:COG1674 438 TQRPSVDVITGLIKANIPSRIAFAVSSKIDSRTILDQGGAEKLLGRGDMLFLPPGASKPIRVQGAFVsDEEVERVVDFLK 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 740 ARRGPRYLFD--PAGLVKSAEASVSHEDELMPEVLDYLSGERHISTSKLQRVFSIGYNRAANLIDALEAKHLVSPAKGAK 817
Cdd:COG1674 518 SQGEPEYIEEilEEEEEEDEGGDDDEDDELFDEAVELVVETQKASTSLLQRRLRIGYNRAARLIDQMEERGIVGPAEGSK 597
|
490
....*....|...
gi 489666241 818 PREVYYSQAKKEE 830
Cdd:COG1674 598 PREVLVSPEELEE 610
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
356-821 |
1.04e-132 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 428.73 E-value: 1.04e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 356 PTGPTPGVSTLPPLKLLASPVkvDQAAQEdwvvaQSDRLDKT-LQAFNVDAHVVAHTVGPTVTQFQVRLASGVKVNKITN 434
Cdd:PRK10263 862 PTTPLPSLDLLTPPPSEVEPV--DTFALE-----QMARLVEArLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISN 934
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 435 LNDDLKLALAAKDIRIEAPIPGKNTVGIEIPNLKPRPVMLREVLDTPAFQQAKSPLTIALGVDLFGQPVVTNLARMPHGL 514
Cdd:PRK10263 935 LSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLL 1014
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 515 IAGATGSGKSVFINSLLVSLLYKATPEQVRLLLIDPKAVELAGYNGLPHLVSPVISDPKAASAALKWVVSTMNDRYKKLA 594
Cdd:PRK10263 1015 VAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMS 1094
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 595 AAGVRNLEQFN---AKAERF------------------HEYAQVLPYLVIIIDELADLMLAAGSEIQDDIARITAKARAA 653
Cdd:PRK10263 1095 ALGVRNLAGYNekiAEADRMmrpipdpywkpgdsmdaqHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAA 1174
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 654 GIHLLVATQRPSVDVITGTIKNNIPTRIAFMTASQIDSRTIIDTAGAERLLGRGDMLYLGNGASQPIRLQGTFV-DHEID 732
Cdd:PRK10263 1175 GIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVrDQEVH 1254
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 733 AIVDYVKARRGPRYLfdpAGLVKSAEAS--------VSHEDELMPEVLDYLSGERHISTSKLQRVFSIGYNRAANLIDAL 804
Cdd:PRK10263 1255 AVVQDWKARGRPQYV---DGITSDSESEggaggfdgAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQM 1331
|
490
....*....|....*..
gi 489666241 805 EAKHLVSPAKGAKPREV 821
Cdd:PRK10263 1332 EAQGIVSEQGHNGNREV 1348
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
474-665 |
1.02e-65 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 218.40 E-value: 1.02e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 474 LREVLDTPAFQQAKSPLTIALGVDLFGQPVVTNLARMP-HGLIAGATGSGKSVFINSLLVSLLYKATPEQVRLLLIDPKA 552
Cdd:pfam01580 1 LLEVLESKPFDTDYSRLPIALGKDISGNPEVFDLKKMPvHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 553 VELAGYNGLPHLVS-PVISDPKAASAALKWVVSTMNDRYKKLAAAGVRNLEQFNAKAERFHEYA---------------- 615
Cdd:pfam01580 81 GELSAYEDIPHLLSvPVATDPKRALRALEWLVDEMERRYALFRALGVRSIAGYNGEIAEDPLDGfgdvflviygvhvmct 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 489666241 616 -----QVLPYLVIIIDELADLMLAAGSEIQDD----IARITAKARAAGIHLLVATQRPS 665
Cdd:pfam01580 161 agrwlEILPYLVVIVDERAELRLAAPKDSEMRvedaIVRLAQKGRAAGIHLLLATQRPS 219
|
|
| FtsK_alpha |
pfam17854 |
FtsK alpha domain; FtsK is a DNA translocase that coordinates chromosome segregation and cell ... |
366-466 |
1.48e-39 |
|
FtsK alpha domain; FtsK is a DNA translocase that coordinates chromosome segregation and cell division in bacteria. In addition to its role as activator of XerCD site-specific recombination, FtsK can translocate double-stranded DNA (dsDNA) rapidly and directionally and reverse direction. FtsK can be split into three domains called alpha (this entry), beta and gamma. The alpha and beta domains contain the core ATPase machinery of the DNA translocase.
Pssm-ID: 436096 [Multi-domain] Cd Length: 101 Bit Score: 141.13 E-value: 1.48e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 366 LPPLKLLASPVKVDQAAQEDWVVAQSDRLDKTLQAFNVDAHVVAHTVGPTVTQFQVRLASGVKVNKITNLNDDLKLALAA 445
Cdd:pfam17854 1 LPPLDLLEPPPTSSQKVDEEELEETAEKLEETLAEFGIEAKVVGVTPGPVVTLYELEPAPGVKVSKITNLSDDLALALSA 80
|
90 100
....*....|....*....|.
gi 489666241 446 KDIRIEAPIPGKNTVGIEIPN 466
Cdd:pfam17854 81 PSIRIVAPIPGKSTIGIEVPN 101
|
|
| T7SS_EccC_a |
TIGR03924 |
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ... |
490-727 |
1.07e-26 |
|
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274858 [Multi-domain] Cd Length: 658 Bit Score: 116.23 E-value: 1.07e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 490 LTIALGVDLFGQPVVTNL---AR--M-PHGLIAGATGSGKSVFINSLLVSLLYKATPEQVRLLLIDPK-AVELAGYNGLP 562
Cdd:TIGR03924 409 LRVPIGVGDDGEPVELDLkesAEggMgPHGLCIGATGSGKSELLRTLVLGLAATHSPEQLNLVLVDFKgGATFLGLEGLP 488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 563 HlVSPVISDpKAASAALkwvVSTMND--------RYKKLAAAG-VRNLEQFNAKAERFHEYAQvLPYLVIIIDELADLmL 633
Cdd:TIGR03924 489 H-VSAVITN-LADEAPL---VDRMQDalagemnrRQELLRAAGnFANVAEYEKARAAGADLPP-LPALFVVVDEFSEL-L 561
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 634 AAGSEIQDDIARITAKARAAGIHLLVATQRPSVDVITGtIKNNIPTRIAFMTASQIDSRTIIDTAGAERLLGRGDMLYLG 713
Cdd:TIGR03924 562 SQHPDFADLFVAIGRLGRSLGVHLLLASQRLDEGRLRG-LESHLSYRIGLKTFSASESRAVLGVPDAYHLPSTPGAGYLK 640
|
250
....*....|....
gi 489666241 714 NGASQPIRLQGTFV 727
Cdd:TIGR03924 641 VDTAEPVRFRAAYV 654
|
|
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
484-714 |
1.73e-23 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 107.38 E-value: 1.73e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 484 QQAKSPLTIA--LGVDLFGQPVVTNL---ARMPHGLIAGATGSGKSVFINSLLVSLLYKATPEQVRLLLIDPKAVELAG- 557
Cdd:TIGR03928 438 AKNETYKSLAvpIGLRGKDDIVYLNLhekAHGPHGLVAGTTGSGKSEILQTYILSLAVNFHPHEVAFLLIDYKGGGMANl 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 558 YNGLPHLVSPV--ISDPKA--ASAALKwvvSTMNDRYKKLAAAGVRNLEQF-----NAKAErfheyaQVLPYLVIIIDEL 628
Cdd:TIGR03928 518 FKNLPHLLGTItnLDGAQSmrALASIK---AELKKRQRLFGENNVNHINQYqklykQGKAK------EPMPHLFLISDEF 588
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 629 ADLMlaagSEIQDDI------ARItakARAAGIHLLVATQRPSvDVITGTIKNNIPTRIAFMTASQIDSRTIIDTAGAER 702
Cdd:TIGR03928 589 AELK----SEQPEFMkelvstARI---GRSLGVHLILATQKPS-GVVDDQIWSNSRFKLALKVQDASDSNEILKTPDAAE 660
|
250
....*....|....*.
gi 489666241 703 LL--GRGdmlYL--GN 714
Cdd:TIGR03928 661 ITvpGRA---YLqvGN 673
|
|
| FtsK_gamma |
pfam09397 |
Ftsk gamma domain; This domain directs oriented DNA translocation and forms a winged helix ... |
764-824 |
2.39e-23 |
|
Ftsk gamma domain; This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Pssm-ID: 462786 [Multi-domain] Cd Length: 63 Bit Score: 93.59 E-value: 2.39e-23
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489666241 764 EDELMPEVLDYLSGERHISTSKLQRVFSIGYNRAANLIDALEAKHLVSPAKGAKPREVYYS 824
Cdd:pfam09397 3 EDELYEEAVEIVIETGKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGPADGSKPREVLIT 63
|
|
| Ftsk_gamma |
smart00843 |
This domain directs oriented DNA translocation and forms a winged helix structure; Mutated ... |
764-824 |
2.24e-22 |
|
This domain directs oriented DNA translocation and forms a winged helix structure; Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Pssm-ID: 197911 [Multi-domain] Cd Length: 63 Bit Score: 90.94 E-value: 2.24e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489666241 764 EDELMPEVLDYLSGERHISTSKLQRVFSIGYNRAANLIDALEAKHLVSPAKGAKPREVYYS 824
Cdd:smart00843 3 EDELYDEAVELVIETQKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGPANGSKPREVLVT 63
|
|
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
478-695 |
5.91e-16 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 82.73 E-value: 5.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 478 LDTPAfQQAKSPLTIALGVDlfgqpvvtnlarmPHGLIAGATGSGKSVFINSLLVSLLYKATPEQVRLLLIDPKAVELAG 557
Cdd:TIGR03928 792 LDDPE-LQSQEPLTLDLSKD-------------GHLAIFGSPGYGKSTFLQTLIMSLARQHSPEQLHFYLFDFGTNGLLP 857
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 558 YNGLPHLVSPVISDPKAASA-ALKWVVSTMNDRYKKLAAAGVRNLEQFNAKAErfheyaQVLPYLVIIIDELaDLMLAAG 636
Cdd:TIGR03928 858 LKKLPHVADYFTLDEEEKIEkLIRRIKKEIDRRKKLFSEYGVASISMYNKASG------EKLPQIVIIIDNY-DAVKEEP 930
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489666241 637 --SEIQDDIARITAKARAAGIHLLV-ATQRPSVDVitgTIKNNIPTRIAFMTASQIDSRTII 695
Cdd:TIGR03928 931 fyEDFEELLIQLAREGASLGIYLVMtAGRQNAVRM---PLMNNIKTKIALYLIDKSEYRSIV 989
|
|
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
468-722 |
3.37e-15 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 80.42 E-value: 3.37e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 468 KPRPV-MLREVLDTPAF------QQAKSPLTIALGVDLFG-QPVVTNLARMPHGLIAGATGSGKSVFINSLLVSLLYKat 539
Cdd:TIGR03928 1046 RPKPIpMVPEELSLEEFreryevRKILEEGSIPIGLDEETvEPVYIDLTENPHLLIVGESDDGKTNVLKSLLKTLAKQ-- 1123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 540 pEQVRLLLIDPKAVELAGYNGLPHLVSpVISDPKAASAALKWVVSTMNDRYKKLAAAGVRNLEQFNAKaerfheyaqvlP 619
Cdd:TIGR03928 1124 -EKEKIGLIDSIDRGLLAYRDLKEVAT-YIEEKEDLKEILAELKEEIELREAAYKEALQNETGEPAFK-----------P 1190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 620 YlVIIIDELADLMLAAGSEIQDDIARITAKARAAGIHLLVATQRPSV----DVITGTIKnNIPTRIAFMTASqiDSRTI- 694
Cdd:TIGR03928 1191 I-LLIIDDLEDFIQRTDLEIQDILALIMKNGKKLGIHFIVAGTHSELsksyDGVPKEIK-QLRTGILGMRKS--DQSFFk 1266
|
250 260
....*....|....*....|....*...
gi 489666241 695 IDTAGAERLLGRGDMLYLGNGASQPIRL 722
Cdd:TIGR03928 1267 LPFTRSEKELEPGEGYFVVNGKYQKIKI 1294
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
477-692 |
1.78e-10 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 64.24 E-value: 1.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 477 VLDTPaFQQAKSPLTialgVDLFGQPvvtnlarmPHGLIAGATGSGKSVFINSLLVSLLYKATPEQVRLLLIDPKAVELA 556
Cdd:TIGR03925 59 IVDRP-FEQRQDPLV----VDLSGAA--------GHVAIVGAPQSGKSTALRTLILALALTHTPEEVQFYCLDFGGGGLA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 557 GYNGLPHlVSPVIS--DPKAASAALKWVVSTMNDRYKKLAAAGVRNLEQFnaKAERFHEYAQVLPY--LVIIIDELADLM 632
Cdd:TIGR03925 126 SLADLPH-VGGVAGrlDPERVRRTVAEVEGLLRRRERLFRTHGIDSMAQY--RARRAAGRLPEDPFgdVFLVIDGWGTLR 202
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489666241 633 lAAGSEIQDDIARITAKARAAGIHLLVATQRPSvdVITGTIKNNIPTRIAFMTA----SQIDSR 692
Cdd:TIGR03925 203 -QDFEDLEDKVTDLAARGLAYGVHVVLTASRWS--EIRPALRDLIGTRIELRLGdpmdSEIDRR 263
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
512-685 |
7.40e-10 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 58.00 E-value: 7.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 512 HGLIAGATGSGKSVFINSLLVSLLykatPEQVRLLLIDPKavelagynGLPHLVSPVISDPKAASAALkwVVSTMNDRYK 591
Cdd:cd01127 1 NTLVLGTTGSGKTTSIVIPLLDQA----ARGGSVIITDPK--------GELFLVIPDRDDSFAALRAL--FFNQLFRALT 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 592 KLAAAGVRNLEQFnakaerfheyaqvlpyLVIIIDELADLMlaagsEIqDDIARITAKARAAGIHLLVATQ------RPS 665
Cdd:cd01127 67 ELASLSPGRLPRR----------------VWFILDEFANLG-----RI-PNLPNLLATGRKRGISVVLILQslaqleAVY 124
|
170 180
....*....|....*....|
gi 489666241 666 VDVITGTIKNNIPTRIAFMT 685
Cdd:cd01127 125 GKDGAQTILGNCNTKLYLGT 144
|
|
| HerA |
COG0433 |
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ... |
491-731 |
6.49e-09 |
|
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain] Cd Length: 388 Bit Score: 58.85 E-value: 6.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 491 TIALGVDLF-GQPVVTNLARM--PHGLIAGATGSGKSVFINSLLVSLLYKatpeQVRLLLIDPKAvELAGYNGLPH---- 563
Cdd:COG0433 25 GILIGKLLSpGVPVYLDLDKLlnRHILILGATGSGKSNTLQVLLEELSRA----GVPVLVFDPHG-EYSGLAEPGAerad 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 564 ----------------------------LVSPVISDPKAASAALKWVVSTMNDRYKKL---------------------- 593
Cdd:COG0433 100 vgvfdpgagrplpinpwdlfataselgpLLLSRLDLNDTQRGVLREALRLADDKGLLLldlkdlialleegeelgeeygn 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 594 ---AAAG-----VRNLEQ----------------------------------------------FNAKAERFHEYAQVLP 619
Cdd:COG0433 180 vsaASAGallrrLESLESadglfgepgldledllrtdgrvtvidlsglpeelqstfvlwllrelFEARPEVGDADDRKLP 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 620 yLVIIIDELADLMLAAGSEIQDDIARITAKARAAGIHLLVATQRPSvDVITgTIKNNIPTRIAFMTASQIDSRTIIDTAG 699
Cdd:COG0433 260 -LVLVIDEAHLLAPAAPSALLEILERIAREGRKFGVGLILATQRPS-DIDE-DVLSQLGTQIILRLFNPRDQKAVKAAAE 336
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 489666241 700 ------AERL--LGRGDMLYLGNGASQPIRLQGTFVDHEI 731
Cdd:COG0433 337 tlsedlLERLpsLGTGEALVLGEGIPLPVLVKIRLPESRP 376
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
436-571 |
1.47e-07 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 55.00 E-value: 1.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 436 NDDLKLALAAKDIRIEAPIPGKNTVgieipNLKPRPVMLREVLDTPAFQqaksPLTIALGV---DLfgQPVVTNLARMPH 512
Cdd:TIGR03925 297 VDDLGTRGLVAVIRDVWGGPPAPPV-----RLLPARLPLSALPAGGGAP----RLRVPLGLgesDL--APVYVDFAESPH 365
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489666241 513 GLIAGATGSGKSVFINSLLVSLLYKATPEQVRLLLIDPK-----AVE---LAGYNGLPHLVSPVISD 571
Cdd:TIGR03925 366 LLIFGDSESGKTTLLRTIARGIVRRYSPDQARLVVVDYRrtllgAVPedyLAGYAATSAALTELIAA 432
|
|
| VirB4 |
COG3451 |
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ... |
492-557 |
1.04e-04 |
|
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain] Cd Length: 546 Bit Score: 45.71 E-value: 1.04e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489666241 492 IALGVDLFGQPVVTNLARM---PHGLIAGATGSGKSVFINSLLVSLLYKatpeQVRLLLIDP-----KAVELAG 557
Cdd:COG3451 183 IYLLNTRSGTPVFFDFHDGldnGNTLILGPSGSGKSFLLKLLLLQLLRY----GARIVIFDPggsyeILVRALG 252
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
124-368 |
7.91e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 43.24 E-value: 7.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 124 AVNHDISLTPSDTNTAKSTTSFIEKQDENEADRRANASKAPQEDTLLAEKSDEAGTQNQKPLDETlPEATAPSVAAKPVT 203
Cdd:PHA03307 52 AVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDP-PPPTPPPASPPPSP 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 204 PTDTHQLSSSTPATSAVEPQAKSAETEKKTLLTADEAEEAPASVNKPFVDSSSQSVINKPHAPNSRKAARiealRRKHAA 283
Cdd:PHA03307 131 APDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPA----AASPRP 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 284 KKLRRELAAQKAKAKQAQAEVQTSPKTSRPPSTTAETPSANDADYSTSALTQSPSTGILPSSMAAAEDTGSAPTGPTPGV 363
Cdd:PHA03307 207 PRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPAS 286
|
....*
gi 489666241 364 STLPP 368
Cdd:PHA03307 287 SSSSP 291
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
514-683 |
3.15e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 38.89 E-value: 3.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 514 LIAGATGSGKSVFINSLLVSLLykatPEQVRLLLIDPKAVELAGYNGLPHLVSPVisdpkaasaalkwvvstmndryKKL 593
Cdd:smart00382 6 LIVGPPGSGKTTLARALARELG----PPGGGVIYIDGEDILEEVLDQLLLIIVGG----------------------KKA 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 594 AAAGVRNLEQFNAKAERFheyaqvlPYLVIIIDE---LADLMLAAGSEIQDDIARITAKARAAGIHLLVATQRPSvDVIT 670
Cdd:smart00382 60 SGSGELRLRLALALARKL-------KPDVLILDEitsLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK-DLGP 131
|
170
....*....|...
gi 489666241 671 GTIKNNIPTRIAF 683
Cdd:smart00382 132 ALLRRRFDRRIVL 144
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
151-279 |
6.47e-03 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 39.79 E-value: 6.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489666241 151 ENEADRRANASKAPQEDTLLAEKSDEAGTQNQKPLDETLPEATAPSVAAKPVTPTDTHQLSSSTPATSAVEPQAKSAETE 230
Cdd:PRK12373 199 EEAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPE 278
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 489666241 231 KKTLLTADEAEEAPASVNKPFVDSSSQSVINKPHAPNSRKAARIEALRR 279
Cdd:PRK12373 279 AQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARPGGADDLKL 327
|
|
| |
