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Conserved domains on  [gi|489741462|ref|WP_003645525|]
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TetR/AcrR family transcriptional regulator [Lactiplantibacillus plantarum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AcrR super family cl43380
DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription];
13-110 2.92e-03

DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription];


The actual alignment was detected with superfamily member COG1309:

Pssm-ID: 440920 [Multi-domain]  Cd Length: 156  Bit Score: 36.80  E-value: 2.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489741462  13 DQRTHQTHRKLITALQANFkAQKTFNELTVKQLCLDAHVGRATFYRHHQDIEDII--VIEYLIA--LQQLGQALNDltTT 88
Cdd:COG1309    1 RRRREATRERILDAALELF-AEKGYEGTSVRDIAARAGVSKGTLYRHFGSKEELLlaVLERLLEelLAALEEALAA--ED 77

                         90       100
                 ....*....|....*....|..
gi 489741462  89 SYATIAGVIVTTLRAHLDLPLL 110
Cdd:COG1309   78 PRERLRALLRAYLEFLAENPAL 99
 
Name Accession Description Interval E-value
AcrR COG1309
DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription];
13-110 2.92e-03

DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription];


Pssm-ID: 440920 [Multi-domain]  Cd Length: 156  Bit Score: 36.80  E-value: 2.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489741462  13 DQRTHQTHRKLITALQANFkAQKTFNELTVKQLCLDAHVGRATFYRHHQDIEDII--VIEYLIA--LQQLGQALNDltTT 88
Cdd:COG1309    1 RRRREATRERILDAALELF-AEKGYEGTSVRDIAARAGVSKGTLYRHFGSKEELLlaVLERLLEelLAALEEALAA--ED 77

                         90       100
                 ....*....|....*....|..
gi 489741462  89 SYATIAGVIVTTLRAHLDLPLL 110
Cdd:COG1309   78 PRERLRALLRAYLEFLAENPAL 99
 
Name Accession Description Interval E-value
AcrR COG1309
DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription];
13-110 2.92e-03

DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription];


Pssm-ID: 440920 [Multi-domain]  Cd Length: 156  Bit Score: 36.80  E-value: 2.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489741462  13 DQRTHQTHRKLITALQANFkAQKTFNELTVKQLCLDAHVGRATFYRHHQDIEDII--VIEYLIA--LQQLGQALNDltTT 88
Cdd:COG1309    1 RRRREATRERILDAALELF-AEKGYEGTSVRDIAARAGVSKGTLYRHFGSKEELLlaVLERLLEelLAALEEALAA--ED 77

                         90       100
                 ....*....|....*....|..
gi 489741462  89 SYATIAGVIVTTLRAHLDLPLL 110
Cdd:COG1309   78 PRERLRALLRAYLEFLAENPAL 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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